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3
votes
3
replies
367
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 8 days ago by 40k • written 9 days ago by • 0
19
votes
14
replies
927
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 9 days ago by 21k • written 10 days ago by ▴ 70
19
votes
10
replies
896
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 15 days ago by ▴ 70 • written 4 weeks ago by ▴ 720
9
votes
6
replies
1.3k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 17 days ago by 77k • written 10 months ago by ▴ 30
3
votes
2
replies
300
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 22 days ago by 40k • written 23 days ago by ▴ 20
3
votes
6
replies
740
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
4 weeks ago by anasjamshed ▴ 120
2
votes
5
replies
567
views
6 follow
Forum: Biostar as a next generation version
app mobile Biostar software tools
updated 4 weeks ago by 77k • written 4 weeks ago by • 0
2
votes
9
replies
689
views
Forum: open source projects looking for contributors
open-source
updated 18 days ago by ▴ 70 • written 4 weeks ago by ▴ 20
0
votes
0
replies
270
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 5 weeks ago by 40k • written 5 weeks ago by ▴ 20
3
votes
4
replies
479
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 5 weeks ago by 134k • written 5 weeks ago by ▴ 130
0
votes
0
replies
225
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 6 weeks ago by 40k • written 6 weeks ago by ▴ 10
1
vote
3
replies
432
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 6 weeks ago by 134k • written 6 weeks ago by ▴ 550
11
votes
8
replies
770
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 29 days ago by 40k • written 7 weeks ago by ▴ 10
361
votes
58
replies
64k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
written 13.6 years ago by 98k
1
vote
2
replies
5.1k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
9 weeks ago by LauferVA 3.7k
0
votes
3
replies
3.6k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 10 months ago by ▴ 110
2
votes
3
replies
467
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 11 weeks ago by 134k • written 11 weeks ago by 3.7k
0
votes
2
replies
622
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 3 months ago by 10k • written 3 months ago by • 0
33
votes
23
replies
3.0k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 3 months ago by 21k • written 3 months ago by 3.7k
7
votes
8
replies
1.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
3 months ago by K • 0
2
votes
3
replies
532
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 3 months ago by ★ 25k • written 3 months ago by • 0
0
votes
0
replies
234
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 3 months ago by 40k • written 3 months ago by ▴ 10
7
votes
4
replies
742
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 3 months ago by 40k • written 3 months ago by 3.7k
2
votes
2
replies
331
views
Forum: Colleges
Colleges india universities
updated 4 months ago by 40k • written 4 months ago by • 0
19
votes
15
replies
1.5k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 4 months ago by 40k • written 5.4 years ago by 5.3k
120
votes
33
replies
37k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 months ago by ★ 2.4k • written 10.1 years ago by 11k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 1 day ago by 21k • written 9.9 years ago by ★ 3.6k
26
votes
12
replies
7.1k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 4 months ago by ▴ 10 • written 9.9 years ago by ▴ 50
170
votes
43
replies
17k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 months ago by 11k • written 10.5 years ago by 98k
0
votes
2
replies
495
views
Forum: How to start in bioinformatics?
career
updated 4 months ago by 40k • written 5 months ago by • 0
3
votes
4
replies
876
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
5 months ago by cwaingartentrabajo • 0
12
votes
5
replies
1.2k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 5 months ago by ▴ 30 • written 5 months ago by • 0
18
votes
14
replies
1.4k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
5 months ago by Simon ▴ 40
0
votes
0
replies
6.8k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
5 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.2k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 5 months ago by 3.7k • written 6 months ago by ▴ 30
4
votes
2
replies
457
views
Forum: advice on course selection for a bioinformatics career.
career
updated 6 months ago by 98k • written 6 months ago by • 0
0
votes
1
reply
352
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 6 months ago by 134k • written 6 months ago by • 0
4
votes
1
reply
510
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 6 months ago by 134k • written 6 months ago by 5.5k
5
votes
3
replies
632
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 6 months ago by 21k • written 6 months ago by ▴ 70
18
votes
10
replies
1.6k
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
6 months ago by bompipi95 ▴ 130
1
vote
0
replies
302
views
Forum: Penetrance versus heritability
penetrance heritability
6 months ago by tacrolimus ▴ 140
10
votes
15
replies
1.5k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 4 months ago by 21k • written 7 months ago by ★ 1.6k
8
votes
4
replies
660
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 7 months ago by 21k • written 7 months ago by ★ 1.5k
0
votes
0
replies
315
views
Forum: NGSrich - hg38
Coverage NGSrich
7 months ago by RK • 0
5
votes
5
replies
990
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 7 months ago by ★ 25k • written 7 months ago by • 0
8
votes
8
replies
1.4k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 8 months ago by ▴ 10 • written 9 months ago by • 0
7
votes
3
replies
827
views
Forum: Find a research paper for reproducing the results
research paper
updated 8 months ago by 134k • written 8 months ago by ★ 2.5k
1
vote
1
reply
584
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 9 months ago by ★ 3.3k • written 9 months ago by • 0
6
votes
12
replies
1.5k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
9 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
2.3k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 5 months ago by ▴ 590 • written 9 months ago by ▴ 350
1,000 results • Page 1 of 20
Recent Votes
A: running RAxML and MrBayes over concatinated multiple sequence alignments
Comment: Weirdness in annotation (missing allele frequencies)
Comment: Weirdness in annotation (missing allele frequencies)
Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
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Recent Replies
Comment: Weirdness in annotation (missing allele frequencies) by Can Abdullah • 0
Yes, I was confused as well. I think the same. Maybe Annovar uses some other resources besides gnomad, but it does not make sense. Also, I …
Comment: Weirdness in annotation (missing allele frequencies) by Can Abdullah • 0
Thank you so much, I decided to move forward as you suggested. Initially, I thought using the most up-to-date databases and positions would…
Comment: Getting the overlap between two GTF files by GenoMax 134k
Something in `AGAT` should work: https://agat.readthedocs.io/en/latest/?badge=latest
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Pierre Lindenbaum 157k
> My problem has been with trying to loop the process. ok here is a **nextflow** based solution,(NOT tested) workflow { …
Comment: Assessing Rockhopper's output by langziv ▴ 50
I see. I tried using the GUI Rockhopper for RNA-seq analysis of a K. pneumoniae strain, but the program didn't find the strain's assembly…
Answer: Getting the overlap between two GTF files by Pierre Lindenbaum 157k
bedtools intersect \ -a <(awk '/^[^#]/ {printf("%s\t%d\t%s\t%s\n",$1,int($4)-1,$5,$0);}' file1.gtf | sort -t $'\t' -k1,1 -k2…
Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
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