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1,000 results • Page 1 of 20
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361
votes
58
replies
64k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
written 13.6 years ago by 98k
1.2k
votes
206
replies
53k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 4 months ago by ★ 1.2k • written 12.5 years ago by 21k
125
votes
46
replies
46k
views
21 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 5 months ago by 40k • written 7.6 years ago by ★ 3.2k
294
votes
27
replies
43k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 14 months ago by 40k • written 7.7 years ago by ★ 2.4k
121
votes
35
replies
40k
views
20 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow
updated 4 months ago by 40k • written 6.3 years ago by ▴ 790
206
votes
58
replies
39k
views
31 follow
Forum: Will Python Take The Place Of R?
r statistics python biopython
updated 7 months ago by 40k • written 10.4 years ago by 9.7k
20
votes
12
replies
38k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 7 months ago by 40k • written 9.8 years ago by 9.7k
120
votes
33
replies
37k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 months ago by ★ 2.4k • written 10.1 years ago by 11k
12
votes
4
replies
37k
views
Forum: BWA command guide
BWA
updated 7 months ago by 40k • written 5.6 years ago by ★ 1.1k
41
votes
17
replies
37k
views
15 follow
Forum: List Of Genome Sequencing Centers/Institutes
genomics institutes
updated 7 months ago by 40k • written 10.6 years ago by 19k
46
votes
12
replies
34k
views
6 follow
Forum: BWA vs Bowtie 2 (Poll)
BWA Poll Bowtie2
updated 16 months ago by 40k • written 8.6 years ago by ▴ 270
197
votes
27
replies
32k
views
20 follow
Forum: Bioinformatics Cartoon
bioinformatics
updated 11 weeks ago by 40k • written 11.7 years ago by ★ 2.3k
21
votes
3
replies
32k
views
Forum: Did You Know That Researchgate Is Spamming Your Colleagues (Perhaps Without Your Explicit Consent)?
researchgate
updated 7 months ago by 40k • written 10.6 years ago by 20k
251
votes
36
replies
32k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
project-management file-management
updated 6 months ago by 40k • written 13.4 years ago by 157k
128
votes
44
replies
30k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 6 months ago by 40k • written 7.0 years ago by ★ 1.0k
74
votes
14
replies
29k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 15 months ago by 40k • written 13.3 years ago by 4.5k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 1 day ago by 21k • written 9.9 years ago by ★ 3.6k
57
votes
19
replies
27k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 7 months ago by 40k • written 11.0 years ago by 10k
203
votes
41
replies
24k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 7 months ago by 40k • written 8.9 years ago by ★ 5.2k
151
votes
39
replies
24k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics
updated 7 months ago by 40k • written 10.7 years ago by 3.0k
262
votes
48
replies
21k
views
37 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 7 months ago by ★ 1.0k • written 8.4 years ago by ★ 4.2k
106
votes
23
replies
21k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 7 months ago by 40k • written 9.7 years ago by ▴ 590
138
votes
42
replies
21k
views
22 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 6 months ago by 3.7k • written 10.3 years ago by ★ 1.6k
307
votes
65
replies
21k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
updated 12 months ago by 86k • written 13.6 years ago by 28k
91
votes
20
replies
19k
views
15 follow
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one WGS RNA-Seq next-gen Exome
updated 11 months ago by 40k • written 9.4 years ago by 20k
286
votes
64
replies
19k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 12 months ago by 86k • written 12.5 years ago by 22k
279
votes
69
replies
19k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective
updated 7 months ago by 40k • written 12.2 years ago by ▴ 160
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 7 months ago by 40k • written 9.8 years ago by 11k
84
votes
36
replies
18k
views
13 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS-mapper
updated 18 months ago by 40k • written 8.8 years ago by 10k
36
votes
21
replies
17k
views
9 follow
Forum: What Is Your Favorite Conserved Protein?
protein conservation
updated 7 months ago by 40k • written 10.1 years ago by 11k
160
votes
22
replies
17k
views
19 follow
Forum: Advice For Newcomers To The Bioinformatics Field
advice career
updated 10 months ago by 40k • written 10.2 years ago by 9.7k
170
votes
43
replies
17k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 months ago by 11k • written 10.5 years ago by 98k
9
votes
9
replies
16k
views
6 follow
Forum: Open Source Bioinformatics projects for beginners
Open-Source Beginners
updated 4 months ago by 40k • written 5.7 years ago by ▴ 40
33
votes
5
replies
16k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq communication analysis pca
updated 14 months ago by 40k • written 7.7 years ago by ▴ 620
48
votes
38
replies
16k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
software genome annotation
updated 5 months ago by 40k • written 7.6 years ago by 11k
31
votes
13
replies
15k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
career
updated 7 months ago by 40k • written 10.7 years ago by ▴ 70
64
votes
29
replies
15k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 7 months ago by 40k • written 12.9 years ago by ▴ 130
290
votes
55
replies
15k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 7 months ago by 40k • written 10.4 years ago by 10k
93
votes
50
replies
15k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
personal-genomics 23andMe
updated 7 months ago by 40k • written 9.8 years ago by 98k
57
votes
43
replies
15k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 6 months ago by 40k • written 4.7 years ago by 10k
63
votes
11
replies
15k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 7 months ago by 40k • written 10.2 years ago by 19k
42
votes
21
replies
14k
views
10 follow
Forum: A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes human selection
updated 7 months ago by 40k • written 9.6 years ago by 28k
19
votes
0
replies
14k
views
Forum: Hadley Wickham of ggplot and RStudio uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
0
votes
0
replies
13k
views
Forum: Characteristics Analysis of Biotechnology Industry
biotechnology-industry
updated 14 months ago by 40k • written 8.4 years ago by • 0
6
votes
12
replies
13k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 6 months ago by 40k • written 7.0 years ago by ▴ 20
47
votes
19
replies
13k
views
10 follow
Forum: Is Software Development a key part of Bioinformatics?
Software-Development
updated 13 months ago by 40k • written 8.7 years ago by ▴ 70
20
votes
22
replies
13k
views
11 follow
Forum: Nextseq for analysts
basespace casava bcl2fastq nextseq
updated 6 months ago by 40k • written 9.3 years ago by 5.3k
23
votes
6
replies
13k
views
Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 11 weeks ago by 40k • written 10.9 years ago by ▴ 140
61
votes
70
replies
12k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 7 months ago by 40k • written 9.5 years ago by 98k
105
votes
46
replies
12k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
epigenetics
updated 7 months ago by 40k • written 10.1 years ago by ★ 1.1k
1,000 results • Page 1 of 20
Recent Votes
Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Recent Replies
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
Comment: biomaRT doesn't report uniprot id by Ram 40k
A couple of notes: 1. It's biomaRt, not biomaRT 2. It's ensembl as in ensEMBL, not the word ensemble. I've fixed those for you but please…
Comment: QC of genetic data by bk11 ★ 1.3k
> Would the SNPs on chromosome 0 and 26 be removed from the genetic file > or left in. Yes, you can leave out chr26 and chr0. > I have s…
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