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4
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1.6k
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Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 5 months ago by 39k • written 10 months ago by ★ 2.9k
0
votes
0
replies
443
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
10 months ago by goddy93 • 0
3
votes
1
reply
453
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 10 months ago by 39k • written 10 months ago by • 0
5
votes
2
replies
789
views
Forum: Skills for industry career in bioinformatics
industry
updated 10 months ago by 12k • written 10 months ago by ▴ 10
9
votes
6
replies
846
views
Forum: Programming languages in industry
programming language
updated 11 months ago by 9.6k • written 11 months ago by ▴ 30
2
votes
6
replies
852
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
11 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
442
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
11 months ago by Francesco ▴ 20
3
votes
2
replies
574
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
11 months ago by BioInfoBeginner ▴ 50
0
votes
0
replies
461
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 5 months ago by 39k • written 11 months ago by ▴ 30
24
votes
6
replies
4.4k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 6 months ago by 39k • written 4.8 years ago by ★ 9.3k
7
votes
8
replies
1.1k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 6 months ago by 39k • written 12 months ago by 2.7k
0
votes
0
replies
421
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 5 months ago by 39k • written 12 months ago by ★ 1.5k
1
vote
3
replies
1.4k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 12 months ago by 3.6k • written 12 months ago by • 0
3
votes
3
replies
596
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 12 months ago by 26k • written 12 months ago by ★ 2.9k
0
votes
0
replies
164
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 5 months ago by 39k • written 12 months ago by ▴ 10
0
votes
2
replies
739
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 12 months ago by 52k • written 12 months ago by ▴ 970
34
votes
11
replies
8.2k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 9 months ago by 39k • written 7.6 years ago by ★ 9.3k
6
votes
8
replies
1.7k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
12 months ago by stan.aanhane ▴ 30
7
votes
6
replies
1.1k
views
Forum: How to learn bioinformatics?
learning
updated 5 months ago by 39k • written 12 months ago by ▴ 10
2
votes
3
replies
548
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 5 months ago by 39k • written 12 months ago by ▴ 30
2
votes
2
replies
689
views
Forum: Project ideas
project-ideas
updated 12 months ago by 52k • written 12 months ago by • 0
0
votes
0
replies
367
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
12 months ago by ch333 • 0
1
vote
6
replies
714
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 11 months ago by 39k • written 13 months ago by • 0
2
votes
2
replies
526
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 5 months ago by 39k • written 13 months ago by • 0
5
votes
5
replies
742
views
Forum: Best book introducing R programming?
coding R
13 months ago by Scottie ▴ 10
4
votes
6
replies
868
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
13 months ago by Matthias Zepper 3.7k
0
votes
0
replies
447
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 5 months ago by 39k • written 13 months ago by ▴ 120
0
votes
0
replies
365
views
Forum: Master's topic in Bioinformatics
Bio-informatique
13 months ago by Badji Oumar • 0
13
votes
15
replies
2.7k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 3 months ago by 39k • written 7.9 years ago by 98k
0
votes
1
reply
448
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
13 months ago by hkrtrainings408 • 0
47
votes
24
replies
5.2k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 5 months ago by 39k • written 5.6 years ago by 52k
5
votes
8
replies
1.7k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 5 months ago by 39k • written 14 months ago by ▴ 10
6
votes
7
replies
750
views
Forum: Generic avatars, not gravatars?
technical avatar
14 months ago by Michael 52k
4
votes
0
replies
1.7k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
14 months ago by rohitsatyam102 ▴ 690
0
votes
0
replies
368
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
14 months ago by jeronimocid93 • 0
2
votes
2
replies
706
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 11 months ago by 39k • written 14 months ago by ▴ 20
15
votes
11
replies
3.7k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 14 days ago by 39k • written 14 months ago by ★ 1.8k
0
votes
0
replies
322
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
14 months ago by akamonto • 0
2
votes
5
replies
664
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 14 months ago by 39k • written 14 months ago by ▴ 520
0
votes
0
replies
362
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 14 months ago by 72k • written 14 months ago by • 0
29
votes
10
replies
5.4k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 12 weeks ago by 39k • written 5.2 years ago by 21k
3
votes
6
replies
1.8k
views
Forum: A Css For Small Screen Devices?
meta
updated 3 months ago by 39k • written 11.1 years ago by ★ 3.6k
12
votes
6
replies
1.3k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 11 months ago by 39k • written 15 months ago by ▴ 20
0
votes
3
replies
595
views
Forum: Project Topics on bioinformatic
Data-analysis Coding Molecular-biology
updated 14 days ago by 39k • written 15 months ago by • 0
0
votes
4
replies
763
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 15 months ago by 129k • written 15 months ago by ▴ 10
2
votes
0
replies
497
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
15 months ago by rohitsatyam102 ▴ 690
3
votes
4
replies
1.6k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 3 months ago by 39k • written 15 months ago by ▴ 10
1
vote
0
replies
380
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 3 months ago by 39k • written 15 months ago by ▴ 10
0
votes
1
reply
561
views
Forum: ensemble VEP server is down
VEP ensemble
updated 15 months ago by 72k • written 15 months ago by • 0
15
votes
10
replies
1.4k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 15 months ago by ★ 23k • written 16 months ago by ★ 2.5k
1,000 results • Page 2 of 20
Recent Votes
A: What does it mean when the ident values are lower than the query cover?
Answer: What does canonical transcript mean in the context of VEP
Automated dbSNP lookup by rsID position, plus genome build liftover
Relatedness vs relatedness2 from vcftools give different results
A: Relatedness vs relatedness2 from vcftools give different results
Comment: LDheatmap will not accept LD matrix from Plink
LDheatmap will not accept LD matrix from Plink
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Recent Replies
Comment: How to sort gff3 according to chromosome order? by BioinfoBee • 0
using sort -k1,1 doesn't keep the order of child features of each gene in output.
Comment: How to sort gff3 according to chromosome order? by Ram 39k
You're sorting by chromosome AND co-ordinates. Try just `sort -k1,1`
Comment: How to sort gff3 according to chromosome order? by BioinfoBee • 0
it does sort but not able to keep the child features (mRNA, CDS, exon) in proper order. For example, I can sort using: sort -k1,1 -k4,4n -k…
Comment: How to sort gff3 according to chromosome order? by Pierre Lindenbaum 154k
uh ? what about the [sort][1] command ? [1]: https://man7.org/linux/man-pages/man1/sort.1.html
Comment: What does canonical transcript mean in the context of VEP by Ram 39k
> Does that mean the fully functional gene most folks think of when thinking of their favorite gene? That ... doesn't make much sense. Did…
Answer: What does canonical transcript mean in the context of VEP by Pierre Lindenbaum 154k
https://www.ensembl.org/info/genome/genebuild/canonical.html > The Ensembl Canonical transcript is a single, representative transcript ide…
Answer: Why is coordinate sort required before findng read depths? by Ram 39k
In an unsorted BAM file, reads can be in any random order. In a co-ordinate sorted BAM file, reads are in the order in which they map to th…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig by Alexander ▴ 70
how does it correspond to 27.2 ? or these are the other proteins ?
Comment: Merge different vcf files by Ram 39k
Normalize them first using `vt normalize` or `bcftools norm` - they need to be in left-aligned parsimonious representation before you can d…
Answer: integrate single cell RNA sequencing data by John Ma ▴ 300
You need to perform batch effect removal for these. Seurat has its integration protocol, and if you use scverse on Python, the usual choice…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig by GenoMax 129k
I added the link for NCBI "book" since DIAMOND seems to follow the format/reporting structure for blast+ results. While the numbers shown i…
Comment: bcftools "--filter-logic" flag, what + means? by Ram 39k
`PASS` + `filter_name` is `filter_name`, not `PASS,filter_name`. PASS means the locus hit no filter. You'll never see a `PASS,<something>`.…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig by Alexander ▴ 70
Thank you for the reply ! I got seems to be even more puzzled here - we see "identities" 95% while in the example "pident" is 27.2 - so …
Comment: bcftools "--filter-logic" flag, what + means? by Eugene A ▴ 170
Thanks a lot for the explanation!
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy by Ram 39k
> Do you mean that because it is 1/1, so both copies is different from the reference and that is why the 0 in the AD is because no reads is…
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