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634 results • Page
2 of 13
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2
votes
5
replies
917
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 5 months ago by
Ram
43k • written 7 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.1k
views
Forum:
open source projects looking for contributors
open-source
updated 6 months ago by
vincenthus
▴ 70 • written 7 months ago by
claudiofr
▴ 20
0
votes
0
replies
519
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 7 months ago by
Ram
43k • written 7 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
1.3k
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 7 months ago by
GenoMax
140k • written 7 months ago by
James Reeve
▴ 130
0
votes
0
replies
546
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 7 months ago by
Ram
43k • written 7 months ago by
RM123
▴ 10
1
vote
3
replies
732
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 7 months ago by
GenoMax
140k • written 7 months ago by
morovatunc
▴ 550
11
votes
8
replies
1.3k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 6 months ago by
Ram
43k • written 7 months ago by
joey
▴ 10
363
votes
58
replies
69k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Istvan Albert
100k
1
vote
2
replies
18k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
8 months ago by
LauferVA
4.1k
0
votes
3
replies
3.8k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 16 months ago by
SushiRoll
▴ 120
2
votes
3
replies
752
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 8 months ago by
GenoMax
140k • written 8 months ago by
LauferVA
4.1k
0
votes
2
replies
1.2k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 9 months ago by
Asaf
10k • written 9 months ago by
Davide
• 0
33
votes
23
replies
3.9k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 9 months ago by
Jeremy Leipzig
22k • written 9 months ago by
LauferVA
4.1k
7
votes
8
replies
1.8k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
9 months ago by
K
• 0
2
votes
3
replies
814
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 9 months ago by
Mensur Dlakic
★ 26k • written 9 months ago by
Andy
• 0
0
votes
0
replies
425
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 9 months ago by
Ram
43k • written 9 months ago by
nick_b55
▴ 10
7
votes
4
replies
1.1k
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 9 months ago by
Ram
43k • written 9 months ago by
LauferVA
4.1k
2
votes
2
replies
562
views
Forum:
Colleges
Colleges
india
universities
updated 10 months ago by
Ram
43k • written 10 months ago by
mahimanepalli36
• 0
19
votes
15
replies
2.0k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 10 months ago by
Ram
43k • written 5.9 years ago by
Bastien Hervé
5.3k
120
votes
33
replies
38k
views
24 follow
Forum:
Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 10 months ago by
carlopecoraro2
★ 2.4k • written 10.6 years ago by
Eric Normandeau
11k
103
votes
42
replies
30k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 19 days ago by
Jeremy Leipzig
22k • written 10.4 years ago by
14134125465346445
★ 3.6k
26
votes
12
replies
7.4k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 10 months ago by
zyan2005
▴ 10 • written 10.4 years ago by
johnblue81
▴ 50
0
votes
2
replies
744
views
Forum:
How to start in bioinformatics?
career
updated 10 months ago by
Ram
43k • written 11 months ago by
caffrey
• 0
4
votes
5
replies
1.3k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
updated 6 weeks ago by
alva
• 0 • written 11 months ago by
cwaingartentrabajo
• 0
12
votes
5
replies
1.9k
views
6 follow
Forum:
Bioinformatics opportunities in Europe?
career
updated 11 months ago by
alwayshope
▴ 40 • written 11 months ago by
melaniem
• 0
19
votes
14
replies
1.9k
views
7 follow
Forum:
What's the general view on point & click bioinformatics for routine analyses?
ngs
RNA-Seq
next-gen-sequencing
11 months ago by
Simon
▴ 40
0
votes
0
replies
7.0k
views
Forum:
Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline
Calling
Variant
Capture
Sequencing
11 months ago by
Alexandre Eeckhoutte
• 0
11
votes
11
replies
1.7k
views
7 follow
Forum:
Any tips in landing a bioinformatic job?
Spain
R
updated 11 months ago by
LauferVA
4.1k • written 12 months ago by
Jorge
▴ 30
10
votes
15
replies
2.0k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 10 months ago by
Jeremy Leipzig
22k • written 13 months ago by
Maximilian Haeussler
★ 1.6k
15
votes
11
replies
2.6k
views
7 follow
Forum:
BioStars and ChatGPT
ChatGPT
Meta
GPT
updated 11 months ago by
ponganta
▴ 590 • written 15 months ago by
Jack Tierney
▴ 350
5
votes
4
replies
1.3k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 9 months ago by
Ram
43k • written 16 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
58k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 10 months ago by
Raony Guimarães
★ 1.4k • written 13.0 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
3.8k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 10 weeks ago by
benformatics
3.9k • written 16 months ago by
buhbs
▴ 30
4
votes
5
replies
1.3k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 10 months ago by
Ram
43k • written 17 months ago by
stelakarayani7
• 0
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 10 months ago by
Ram
43k • written 18 months ago by
iraun
6.2k
3
votes
2
replies
825
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 9 months ago by
Ram
43k • written 21 months ago by
BioInfoBeginner
▴ 50
15
votes
11
replies
4.6k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 10 months ago by
Ram
43k • written 2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
3
replies
897
views
Forum:
Project Topics on bioinformatic
Data-analysis
Coding
Molecular-biology
updated 10 months ago by
Ram
43k • written 2.1 years ago by
Abdullahi
• 0
3
votes
1
reply
864
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 5 weeks ago by
BioinfGuru
★ 1.6k • written 2.1 years ago by
rohitsatyam102
▴ 840
17
votes
14
replies
3.2k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 9 months ago by
Alexander
▴ 200 • written 2.2 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
745
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 9 months ago by
Ram
43k • written 2.2 years ago by
carlopecoraro2
★ 2.4k
12
votes
7
replies
6.7k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 3 days ago by
dsull
★ 5.6k • written 2.6 years ago by
hamarillo
▴ 70
0
votes
0
replies
502
views
Forum:
Poll about a structured description of a tool, a pipeline
survey
pipeline
updated 9 months ago by
Ram
43k • written 2.7 years ago by
Anastasiya M
• 0
7
votes
20
replies
2.0k
views
Forum:
NGS RNA-Seq Analysis Pipeline Tophat vs STAR
STAR
RNA-Seq
TopHat
updated 10 months ago by
Ram
43k • written 3.2 years ago by
mikefeixu
▴ 10
11
votes
9
replies
2.4k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 10 months ago by
Ram
43k • written 4.2 years ago by
ATpoint
81k
0
votes
0
replies
687
views
Forum:
where to get the site mutation rate of SARS-CoV-2?
sequence
sequencing
updated 10 months ago by
Ram
43k • written 3.3 years ago by
2001linana
▴ 40
6
votes
5
replies
1.5k
views
Forum:
Very generally speaking, what are valid criteria to decide that a sample is an outlier?
outliers
updated 10 months ago by
Ram
43k • written 3.2 years ago by
Aspire
▴ 300
7
votes
4
replies
1.1k
views
Forum:
Specific question on torturing the data until it confesses
ipa
gene-set-enrichment
statistics
updated 10 months ago by
Ram
43k • written 3.3 years ago by
Aspire
▴ 300
7
votes
3
replies
1.3k
views
Forum:
Is it still recommended to avoid macOS Big Sur?
mac
updated 10 months ago by
Ram
43k • written 3.3 years ago by
jrleary
▴ 210
25
votes
7
replies
1.9k
views
6 follow
Forum:
What Are The Best Bioinformatics Course Materials [2020]
course
teaching
updated 10 months ago by
Ram
43k • written 3.3 years ago by
Carlo Yague
8.6k
634 results • Page
2 of 13
Recent Votes
Trouble with bedtools getfasta
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
Answer: Hybrid assembly Pacbio- Nanopore
C: Why is 0/0 homozygous reference call in VCF useful information?
Answer: snippy error
Answer: TSS of protein coding genes
TSS of protein coding genes
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Recent Replies
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
by
ATpoint
81k
It's `-log10(pvalue)`, you miss the minus. Some people use indeed pvalue, but since you're filtering on padj, I would show `-log10(padj)` r…
Comment: calculate mismatch rate from VCF file
by
Dora
▴ 10
Thank you for your reply!! My bad. I didn't mention that I want to get the mismatch rate for each site. Is this error rate for each site?
Comment: Interproscan taking so much time
by
dthorbur
★ 1.7k
Parallelize. Chunk your transcriptome into groups of something like 5000 (or less if you want it to go faster), and run an array across you…
Comment: Nanopore data filtering using fastp
by
dthorbur
★ 1.7k
Ah, sorry, I was thinking of the wrong command. You can either use `seqtk sample` or `seqkit sample`. I would recommend the former if your …
Comment: Variant calling of GBS data
by
analyst
▴ 10
It does not output warning when I skip flags for MQRankSum and ReadPosRankSum **java -jar -Xmx30G gatk.jar VariantFiltration -R reference…
Comment: Merging featureCounts output for different species
by
andrebolerbarros
• 0
Is there any list of homology you could use for this merging? Maybe this would be helpful
Comment: Variant calling of GBS data
by
Pierre Lindenbaum
160k
again, remove the spaces " "SOR > 10." -> " "SOR>10"
Comment: Variant calling of GBS data
by
analyst
▴ 10
It is still giving same warning java -jar -Xmx30G gatk.jar VariantFiltration -R reference.fa -V A_raw_snps.vcf -O A_filtered_snps.vcf --fi…
Comment: Nextflow ERROR : Timeout waiting for connection from pool
by
dzisis1986
▴ 70
It doesn't make sense how to change the threads and in my case it is not working! What kind of problem is that ? is it related to Amazon to…
Comment: STAR aligner options
by
theophile
• 0
I have finally found out the reason behind this behavior. As [pointed out by dsull][1], the beginning of the alignment of read1 to the rat…
Comment: Variant calling of GBS data
by
analyst
▴ 10
Right Pierre, thanks.
Comment: Variant calling of GBS data
by
Pierre Lindenbaum
160k
remove spaces in expressions. 'MQRankSum<0.4'
Comment: Variant calling of GBS data
by
analyst
▴ 10
![enter image description here][1] [1]: /media/images/710829f2-e4af-4743-a31d-822520b4
Comment: Variant calling of GBS data
by
analyst
▴ 10
Vcf file contains this information ![enter image description here][1] [1]: /media/images/b3f699e5-2dd9-4e08-8f5b-2a716544
Comment: Variant calling of GBS data
by
analyst
▴ 10
Command used : **java -jar -Xmx30G gatk.jar VariantFiltration -R reference.fa -V A_raw_snps.vcf -O A_filtered_snps.vcf --filter-name "QD_f…
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