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1,000 results • Page 2 of 20
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7
votes
8
replies
1.0k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 4 months ago by 38k • written 10 months ago by 2.6k
0
votes
0
replies
384
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 3 months ago by 38k • written 10 months ago by ★ 1.5k
1
vote
3
replies
1.1k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 10 months ago by 3.5k • written 10 months ago by • 0
3
votes
3
replies
550
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 10 months ago by 26k • written 10 months ago by ★ 2.9k
0
votes
0
replies
135
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 3 months ago by 38k • written 10 months ago by ▴ 10
0
votes
2
replies
663
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 10 months ago by 52k • written 10 months ago by ▴ 970
34
votes
11
replies
8.0k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 7 months ago by 38k • written 7.4 years ago by ★ 9.3k
6
votes
8
replies
1.4k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
10 months ago by stan.aanhane ▴ 30
7
votes
6
replies
924
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by 38k • written 10 months ago by ▴ 10
2
votes
3
replies
489
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 3 months ago by 38k • written 10 months ago by ▴ 30
2
votes
2
replies
628
views
Forum: Project ideas
project-ideas
updated 10 months ago by 52k • written 10 months ago by • 0
0
votes
0
replies
320
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
10 months ago by ch333 • 0
1
vote
6
replies
642
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 9 months ago by 38k • written 11 months ago by • 0
2
votes
2
replies
484
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 3 months ago by 38k • written 11 months ago by • 0
5
votes
5
replies
666
views
Forum: Best book introducing R programming?
coding R
11 months ago by Scottie ▴ 10
4
votes
6
replies
711
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
11 months ago by Matthias Zepper 3.4k
0
votes
0
replies
414
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 3 months ago by 38k • written 11 months ago by ▴ 120
0
votes
0
replies
330
views
Forum: Master's topic in Bioinformatics
Bio-informatique
11 months ago by Badji Oumar • 0
13
votes
15
replies
2.6k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 6 weeks ago by 38k • written 7.7 years ago by 97k
0
votes
1
reply
410
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
11 months ago by hkrtrainings408 • 0
47
votes
24
replies
4.9k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 3 months ago by 38k • written 5.4 years ago by 52k
5
votes
8
replies
1.4k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 3 months ago by 38k • written 11 months ago by ▴ 10
6
votes
7
replies
677
views
Forum: Generic avatars, not gravatars?
technical avatar
12 months ago by Michael D 52k
4
votes
0
replies
1.4k
views
Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
12 months ago by rohitsatyam102 ▴ 690
0
votes
0
replies
333
views
Forum: Phylogenomics in the presence of gene flow
hybridisation introgression gene-flow Phylogenomics
12 months ago by jeronimocid93 • 0
2
votes
2
replies
646
views
Forum: Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs bioinformatician
updated 9 months ago by 38k • written 12 months ago by ▴ 20
15
votes
11
replies
3.5k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
DAVID enrichment ontology gene analysis GSEA
updated 5 months ago by 71k • written 12 months ago by ★ 1.8k
0
votes
0
replies
287
views
Forum: CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2 counts circRNA
12 months ago by akamonto • 0
2
votes
5
replies
596
views
Forum: 1000 genomes data?
DNA 1000genomes variation
updated 12 months ago by 38k • written 12 months ago by ▴ 520
0
votes
0
replies
328
views
Forum: What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna genome analysis programming statistics
updated 12 months ago by 71k • written 12 months ago by • 0
29
votes
10
replies
5.1k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 22 days ago by 38k • written 5.0 years ago by 20k
3
votes
6
replies
1.8k
views
Forum: A Css For Small Screen Devices?
meta
updated 5 weeks ago by 38k • written 10.9 years ago by ★ 3.6k
10
votes
6
replies
1.1k
views
Forum: M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career Masters Graduation
updated 9 months ago by 38k • written 13 months ago by ▴ 20
0
votes
3
replies
544
views
Forum: Project Topics on bioinformatic
biology Nutrition Data Technology analysis Molecular Coding
updated 13 months ago by 21k • written 13 months ago by • 0
0
votes
4
replies
686
views
Forum: Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond performance EPYC 7643 multithreading AMD poor
updated 13 months ago by 127k • written 13 months ago by ▴ 10
2
votes
0
replies
449
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
13 months ago by rohitsatyam102 ▴ 690
3
votes
4
replies
1.4k
views
Forum: Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area postgraduates
updated 8 weeks ago by 38k • written 13 months ago by ▴ 10
1
vote
0
replies
344
views
Forum: Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate bioinformatics-skills
updated 8 weeks ago by 38k • written 13 months ago by ▴ 10
0
votes
1
reply
519
views
Forum: ensemble VEP server is down
VEP ensemble
updated 13 months ago by 71k • written 13 months ago by • 0
15
votes
10
replies
1.2k
views
7 follow
Forum: Tips and tricks to improve data visualization in bioinformatics
visualization ggplot2 plot
updated 13 months ago by ★ 23k • written 13 months ago by ★ 2.4k
3
votes
8
replies
1.0k
views
Forum: What are the pain points of using Genomics on the cloud today?
datasharing pipelines workspaces cloud genomics
updated 14 months ago by 21k • written 14 months ago by ▴ 520
0
votes
0
replies
356
views
Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 14 months ago by 153k • written 14 months ago by ★ 2.2k
4
votes
9
replies
1.7k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
14 months ago by melatoninixo ▴ 10
9
votes
9
replies
1.8k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
14 months ago by bernhard.liebl ▴ 30
0
votes
1
reply
411
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 14 months ago by 71k • written 14 months ago by ▴ 110
0
votes
0
replies
278
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
14 months ago by sabaghianamir70 ▴ 60
6
votes
5
replies
3.6k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 9 months ago by 38k • written 4.8 years ago by • 0
6
votes
5
replies
749
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 14 months ago by 97k • written 14 months ago by ▴ 570
4
votes
7
replies
1.3k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 14 months ago by ★ 3.2k • written 14 months ago by ▴ 110
361
votes
57
replies
59k
views
43 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
updated 6 months ago by 85k • written 13.1 years ago by 97k
1,000 results • Page 2 of 20
Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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Recent Replies
Comment: TCGA-BRCA tissue and RNAseq problem by pinheirofabiano ▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic by antoine.fauchois92 • 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values by Eliza ▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids? by dare_devil ★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids? by GenoMax 127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL by rpolicastro 11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created by DdogBoss • 0
Yes, it completed the dry run. What other information do you need?
Comment: LDSC correlation calculate confidence intervals by YL ▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals by YL ▴ 10
Hi, Are you able to find an answer for this? I have the exact question! YL
Answer: Gene duplicate by ATpoint 71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
Comment: Gene duplicate by Ram 38k
> some Ensembl IDs that are the same Please show us some examples.
Comment: R package for functional enrichment and depletion analysis by rpolicastro 11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files by Darrenjdd • 0
Perfect! Thank you!
Comment: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p by Daniel • 0
Hi, I am wondering if you ever got an answer for this question. Also, I am curious why it is true that "All the reads coming from one end…
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