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459 results • Page
2 of 10
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6
votes
15
replies
1.7k
views
Forum:
PhD Bioinformatics on GWAS
SNP
GWAS
genome
PHD
updated 10 months ago by
Ram
43k • written 4.2 years ago by
davidenoma
▴ 50
23
votes
15
replies
5.0k
views
6 follow
Forum:
On the usage of Golang
assembly
next-gen
alignment
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Lucas Peres
▴ 80
21
votes
15
replies
2.1k
views
9 follow
Forum:
Working abroad without a PhD
career
updated 10 months ago by
Ram
43k • written 4.6 years ago by
Rox
★ 1.4k
10
votes
15
replies
2.1k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 10 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
22
votes
15
replies
8.8k
views
11 follow
Forum:
RNASeq user experience with Novogene?
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivanarg2
▴ 80
28
votes
15
replies
2.2k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivan.radonov
▴ 10
57
votes
15
replies
6.2k
views
9 follow
Forum:
Good practices while dealing with very large datasets
Big-Data
Programming
updated 11 months ago by
Ram
43k • written 7.0 years ago by
VHahaut
★ 1.2k
19
votes
14
replies
2.0k
views
7 follow
Forum:
What's the general view on point & click bioinformatics for routine analyses?
ngs
RNA-Seq
next-gen-sequencing
12 months ago by
Simon
▴ 40
3
votes
14
replies
2.1k
views
6 follow
Forum:
Search for gene variants
next-gen
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Rm
8.3k
19
votes
14
replies
2.1k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 7 months ago by
Jeremy Leipzig
22k • written 7 months ago by
vincenthus
▴ 70
12
votes
14
replies
2.4k
views
8 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
written 4.9 years ago by
Gabriel Wajnberg
▴ 70
17
votes
14
replies
3.3k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 10 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
9
votes
14
replies
2.4k
views
Forum:
MS Bioinformatics Project
assembly
sequencing
alignment
R
SNP
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Moneeb Bajwa
▴ 10
17
votes
14
replies
1.9k
views
10 follow
Forum:
What would be the trend in next few years in NGS era?
NGS
sequencing
updated 11 months ago by
Ram
43k • written 5.4 years ago by
ahmad mousavi
▴ 800
73
votes
14
replies
4.2k
views
12 follow
Forum:
Things you wish you knew when entering the bioinformatics field
pitfalls
advice
updated 10 months ago by
Ram
43k • written 3.6 years ago by
jared.andrews07
★ 16k
5
votes
14
replies
2.0k
views
Forum:
immediate help needed for genome sequence analysis of bacteria
genome
miseq
webinar
paired-end
updated 11 months ago by
Ram
43k • written 7.0 years ago by
mariomemory
• 0
1
vote
13
replies
2.8k
views
Forum:
Bioinformatics computer upgrade help
computer
updated 10 months ago by
Ram
43k • written 3.8 years ago by
truebeliever24
▴ 50
7
votes
13
replies
1.3k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 6 months ago by
kieran
▴ 10
15
votes
13
replies
4.0k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 17 months ago by
buhbs
▴ 30
30
votes
13
replies
3.7k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 10 months ago by
Ram
43k • written 9.6 years ago by
Medhat
9.7k
4
votes
13
replies
1.7k
views
Forum:
Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare
next-gen
NovaSeq
updated 10 months ago by
Ram
43k • written 4.8 years ago by
Torrey Ah-Tye
▴ 10
11
votes
13
replies
4.5k
views
6 follow
Forum:
NGS Data storage solutions for small organisations or big labs
big-data
HTS
storage
NGS
metagenomics
updated 10 months ago by
Ram
43k • written 4.9 years ago by
bioinfo
▴ 830
31
votes
12
replies
915
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
7 weeks ago by
karlaarz
▴ 90
22
votes
12
replies
1.8k
views
6 follow
Forum:
What were the most impactful Bioinformatics papers published this year
papers
publications
updated 10 months ago by
Ram
43k • written 4.3 years ago by
c_u
▴ 520
18
votes
12
replies
2.5k
views
6 follow
Forum:
why GATK makes things more complicated ?
genomics
updated 10 months ago by
Ram
43k • written 5.2 years ago by
Learner
▴ 280
12
votes
12
replies
3.0k
views
Forum:
Programming interview via Skype
programming-test
interview
updated 11 months ago by
Ram
43k • written 5.8 years ago by
padgaus
▴ 50
4
votes
12
replies
1.5k
views
Forum:
publicly available data
arrayexpress
GEO
SRA
updated 10 months ago by
Ram
43k • written 4.5 years ago by
Konstantinos Yeles
▴ 110
21
votes
12
replies
3.5k
views
Forum:
How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta
how-to
documentation
3 months ago by
Ram
43k
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 10 months ago by
Ram
43k • written 4.0 years ago by
scolobs
• 0
26
votes
12
replies
7.5k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 11 months ago by
zyan2005
▴ 10 • written 10.5 years ago by
johnblue81
▴ 50
23
votes
12
replies
1.9k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 10 months ago by
Ram
43k • written 3.8 years ago by
David Langenberger
11k
17
votes
11
replies
970
views
Forum:
How to overcome the imposter syndrome in bioinformatics?
advice
12 weeks ago by
sil_bioinfo
▴ 40
8
votes
11
replies
1.7k
views
Forum:
What makes a good bionformatics prediction service from the point of user experience?
server
prediction-service
updated 11 months ago by
Ram
43k • written 6.5 years ago by
aquaq
▴ 40
21
votes
11
replies
1.9k
views
8 follow
Forum:
what I want to do after the PhD?
PhD
updated 11 months ago by
Ram
43k • written 7.1 years ago by
zizigolu
★ 4.3k
14
votes
11
replies
6.7k
views
7 follow
Forum:
Do you need a deduplication tool for FASTQ data in fastp?
deduplication
fastp
updated 10 months ago by
Ram
43k • written 4.9 years ago by
chen
★ 2.5k
13
votes
11
replies
4.7k
views
Forum:
Anyone using Ubuntu on Windows (WSL)?
ubuntu
wsl
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Batu
▴ 250
21
votes
11
replies
2.0k
views
Forum:
Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by
Ram
43k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
21
votes
11
replies
2.5k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 5 months ago by
Jeremy Leipzig
22k • written 13 months ago by
bompipi95
▴ 150
23
votes
11
replies
2.0k
views
9 follow
Forum:
file and directory management best practices
file-management
updated 10 months ago by
Ram
43k • written 3.7 years ago by
nkinney06
▴ 140
22
votes
11
replies
3.3k
views
Forum:
ExpressionSet in the age of tidyverse
expressionset
R
bioconductor
updated 11 months ago by
Ram
43k • written 5.9 years ago by
igor
13k
10
votes
11
replies
4.2k
views
7 follow
Forum:
What made you interested in Bioinformatics?
career
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Hussain Ather
▴ 990
9
votes
11
replies
3.2k
views
7 follow
Forum:
Fields with biggest demand for bioinformatics?
career
updated 10 months ago by
Ram
43k • written 5.2 years ago by
BioinformaticsLad
▴ 200
18
votes
11
replies
2.4k
views
8 follow
Forum:
Create a File format to store Variant
hgvs
json
variant
updated 11 months ago by
Ram
43k • written 5.8 years ago by
sacha
★ 2.4k
15
votes
11
replies
4.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 11 months ago by
Ram
43k • written 2.1 years ago by
mark.ziemann
★ 1.9k
19
votes
10
replies
1.5k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 7 months ago by
vincenthus
▴ 70 • written 7 months ago by
Sasha
▴ 830
9
votes
10
replies
1.7k
views
Forum:
Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences
data-analysis
updated 11 months ago by
Ram
43k • written 6.1 years ago by
lessismore
★ 1.3k
26
votes
10
replies
4.4k
views
6 follow
Forum:
Why not merging?
fastq
sequencing
updated 11 months ago by
Ram
43k • written 6.8 years ago by
finswimmer
16k
9
votes
10
replies
1.3k
views
6 follow
Forum:
What's more clear, loops or functions?
R
updated 11 months ago by
Ram
43k • written 5.5 years ago by
DriesB
▴ 110
15
votes
10
replies
2.3k
views
6 follow
Forum:
help identifying bioinformatics operations tools
database
next-gen
operations
genomics
updated 11 months ago by
Ram
43k • written 5.4 years ago by
jsmedmar
▴ 80
14
votes
10
replies
2.1k
views
Forum:
WGBS alignment with BitMapperBS
BitMapperBS
bismark
updated 10 months ago by
Ram
43k • written 4.8 years ago by
Shicheng Guo
★ 9.4k
459 results • Page
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bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
Comment: featureCounts --primary tag counting uniquely mapped reads and excludes multi-ma
Answer: Duplicate marking, read names, and the SRA
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Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer
by
Mensur Dlakic
★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
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by
BioinfGuru
★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
by
GenoMax
141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
rheab1230
▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Matthias Zepper
4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples
by
Ram
43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA
by
GenoMax
141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
GenoMax
141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa
by
Jean-Karim Heriche
27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA
by
Luka
• 0
>Curios if there a reference for this? [Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
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