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1,000 results • Page 2 of 20
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69
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39
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3.3k
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14 follow
Forum: Preparation for Bioinformatics.SE closing
biostars Forum
updated 5.8 years ago by ▴ 750 • written 5.8 years ago by 13k
68
votes
48
replies
6.9k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2 errors Forum
updated 5.4 years ago by ★ 2.9k • written 5.7 years ago by 97k
67
votes
21
replies
5.0k
views
8 follow
Forum: Meta: Markdown in Biostars (now enabled)
meta
9 days ago by Ram 38k
67
votes
22
replies
6.3k
views
16 follow
Forum: Learning Python: list of resources
programming python Forum learning
updated 5.7 years ago by ▴ 10 • written 6.4 years ago by ★ 2.8k
67
votes
40
replies
8.1k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 13 months ago by 38k • written 8.3 years ago by ★ 2.9k
66
votes
21
replies
5.6k
views
18 follow
Forum: Is there anyone who was a pure biologist?
next-gen
updated 17 days ago by 38k • written 8.9 years ago by ▴ 100
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 22 days ago by 38k • written 9.3 years ago by 11k
65
votes
57
replies
6.0k
views
12 follow
Forum: Bioinformatics Mobile App
android genome iphone mutations
updated 13 months ago by 38k • written 8.4 years ago by ▴ 20
65
votes
27
replies
6.2k
views
14 follow
Forum: What is the reason for most software errors in Bioinformatics according to you?
SNP blast software error sequencing R Forum
updated 7.0 years ago by ▴ 960 • written 7.0 years ago by ▴ 110
64
votes
29
replies
14k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 5 weeks ago by 38k • written 12.4 years ago by ▴ 130
64
votes
8
replies
7.8k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 27 days ago by 38k • written 9.9 years ago by 20k
64
votes
24
replies
2.1k
views
12 follow
Forum: How much I must feel useless?
Programming machine learning statistics Forum
updated 4.5 years ago by 9.5k • written 4.5 years ago by ▴ 80
63
votes
28
replies
3.0k
views
11 follow
Forum: Bioinformatics analyses & errors: need for better post-publication tools?
RNA-Seq next-gen Forum
6.9 years ago by ablanchetcohen ★ 1.2k
63
votes
9
replies
3.5k
views
Forum: Should The "Post Closing" Option Exist? Vote Now!
meta
updated 26 days ago by 38k • written 9.8 years ago by 97k
61
votes
11
replies
14k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 24 days ago by 38k • written 9.7 years ago by 19k
61
votes
70
replies
11k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 5 weeks ago by 38k • written 8.9 years ago by 97k
61
votes
16
replies
6.1k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 10 weeks ago by ★ 1.3k • written 2.4 years ago by 7.9k
60
votes
28
replies
7.3k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 14 days ago by 38k • written 8.5 years ago by 97k
60
votes
14
replies
11k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 27 days ago by 38k • written 6.0 years ago by 47k
57
votes
15
replies
4.2k
views
9 follow
Forum: Entice Biologists To Learn R
r
updated 5 weeks ago by 38k • written 11.5 years ago by 5.3k
57
votes
43
replies
14k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 14 days ago by 38k • written 4.2 years ago by 9.9k
57
votes
42
replies
5.1k
views
12 follow
Forum: Why is academic software hard to install?
software-installation
updated 14 months ago by 38k • written 8.4 years ago by 33k
57
votes
19
replies
26k
views
6 follow
Forum: Attention: Bowtie2 And Multiple Hits
next-gen bowtie mapping
updated 28 days ago by 38k • written 10.4 years ago by 9.9k
57
votes
9
replies
5.1k
views
14 follow
Forum: Handbooks for Bioinformatics Ninjas
gallery Bioinformatics Forum
written 6.9 years ago by ★ 9.3k
57
votes
15
replies
5.1k
views
9 follow
Forum: Good practices while dealing with very large datasets
Programming BigData Forum
updated 5.9 years ago by 34k • written 5.9 years ago by ★ 1.1k
56
votes
25
replies
2.8k
views
8 follow
Forum: Am I crazy, or are most published RNA-seq studies vastly underpowered?
RNA-Seq power sample size statistical power Forum
updated 2.6 years ago by ▴ 140 • written 2.6 years ago by ▴ 210
56
votes
19
replies
3.4k
views
9 follow
Forum: How to apply for a job
cover letter CV resume application Forum
written 5.7 years ago by 23k
55
votes
16
replies
5.0k
views
8 follow
Forum: Mission Impossible: you have 1 minute to analyze the Ebola Genome
ebola mission-impossible
updated 6 months ago by 38k • written 8.4 years ago by 97k
54
votes
16
replies
5.0k
views
13 follow
Forum: The new era of bioinformatics: simple and fast tools, fewer and more informative data
kallisto computational-cost
updated 7 weeks ago by 38k • written 7.9 years ago by 97k
54
votes
34
replies
3.6k
views
13 follow
Forum: Should We Release Database Dumps Of All Questions On Biostar?
meta biostars
updated 5 weeks ago by 38k • written 12.3 years ago by 97k
52
votes
8
replies
4.3k
views
8 follow
Forum: What Is The Proper Way To Think About Reinventing The Wheel As A Bioinformatician?
software-development
updated 28 days ago by 38k • written 10.1 years ago by ★ 4.0k
52
votes
18
replies
5.8k
views
14 follow
Forum: Do You Feel Good Or Bad About Putting Your Photo At Biostar?
meta biostars
updated 5 weeks ago by 38k • written 9.5 years ago by ★ 1.1k
51
votes
24
replies
8.2k
views
7 follow
Forum: Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 15 months ago by 38k • written 8.6 years ago by ★ 5.2k
51
votes
16
replies
5.0k
views
11 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2011?
papers
updated 6 weeks ago by 38k • written 11.3 years ago by ★ 2.9k
50
votes
8
replies
9.0k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 28 days ago by 38k • written 10.1 years ago by 16k
50
votes
19
replies
4.3k
views
7 follow
Forum: Proposal: Biostar Wants To Run Your Ads. Feedback Requested.
biostars
updated 5 weeks ago by 38k • written 10.1 years ago by 97k
50
votes
20
replies
4.9k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 14 days ago by 38k • written 7.0 years ago by ★ 1.1k
49
votes
19
replies
6.4k
views
13 follow
Forum: Why Are There No Proteomics Questions In Biostar?
proteomics biostars
updated 5 weeks ago by 38k • written 12.4 years ago by ▴ 410
49
votes
4
replies
7.9k
views
Forum: How to add images to a Biostars post
how-to
6 weeks ago by Ram 38k
49
votes
27
replies
6.0k
views
10 follow
Forum: Possible augmented reality tools for bioinformatics and current problems
bioinformatics augmented reality visualization 3D Forum
updated 7.4 years ago by • 0 • written 7.4 years ago by ▴ 90
49
votes
36
replies
7.2k
views
11 follow
Forum: New features and bug fixes for Biostar to work on during Google Summer of Code
meta biostars gsoc
updated 5 weeks ago by 38k • written 8.9 years ago by ▴ 110
48
votes
38
replies
15k
views
8 follow
Forum: Eukaryotic Genome Annotation in 2016
genome annotation software Forum
updated 7.0 years ago by ▴ 360 • written 7.0 years ago by 11k
47
votes
19
replies
12k
views
10 follow
Forum: Is Software Development a key part of Bioinformatics?
Software-Development
updated 7 months ago by 38k • written 8.2 years ago by ▴ 70
47
votes
14
replies
4.2k
views
Forum: Was FASTA ever popular?
FASTA alignment history Forum
updated 6.5 years ago by ★ 2.9k • written 6.5 years ago by 13k
47
votes
37
replies
7.3k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 23 days ago by 38k • written 9.6 years ago by 2.3k
47
votes
7
replies
3.5k
views
7 follow
Forum: Would There Be Interest In A 'Next-Gen Sequencing' Stackexchange Site?
meta next-gen
updated 28 days ago by 38k • written 10.3 years ago by ★ 3.6k
47
votes
11
replies
3.6k
views
Forum: What Operating System Are You Using For Bioinformatic Work?
linux windows
updated 22 days ago by 38k • written 9.3 years ago by 11k
47
votes
24
replies
4.9k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 3 months ago by 38k • written 5.4 years ago by 52k
47
votes
30
replies
3.3k
views
10 follow
Forum: Bioinformatics software distribution
software tools Forum
6.0 years ago by Petr Ponomarenko ★ 2.7k
46
votes
9
replies
7.8k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 21 days ago by 38k • written 9.3 years ago by ▴ 140
1,000 results • Page 2 of 20
Recent Votes
Comment: TSS of protein coding genes
Comment: TSS of protein coding genes
Comment: How to find promoter sequence of a gene?
Answer: BCFtools for somatic vs. germline variant calling
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file?
Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
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Recent Replies
Answer: Make a S4/S3 object with my clinical data by ATpoint 70k
Use a SummarizedExperiment. It's assay-agnostic so you can give any assay eith features/genes/observations as rows and samples at columns. …
Comment: TSS of protein coding genes by ConvolutedGenome ▴ 10
I seeee Thank you for your input :) !!
Comment: how to get to a VCF from bam files by Ram 38k
Read my script - change your bcftools to output VCF, not BCF. File size (as long as it's >0) is not an indicator of anything significant. …
Comment: how to get to a VCF from bam files by Human • 0
Thanks a lot GenoMax and Ram! After a short look into that manual https://samtools.github.io/bcftools/howtos/variant-calling.html I went w…
Answer: BCFtools for somatic vs. germline variant calling by Ram 38k
bcftools does not differentiate. It calls variant loci. I don't think there's a single variant caller that calls both germline and somatic …
Comment: What means this Error when running a script in python?? by Ram 38k
Please format your code properly the next time. I've seen people use wrong formatting options to a reasonable extent, but your formatting w…
Comment: Gaia CNV error TCGA data by Ram 38k
1. Don't use people's names as tags. 2. Format your post properly. I've done what I can for now. 3. Add a link to "the tutorial from @kevin…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
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