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1,000 results • Page 3 of 20
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5
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4
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1.3k
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Forum: Best BAM viewer in 2022
sam bam
updated 10 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.1k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 3 months ago by 3.9k • written 17 months ago by ▴ 30
0
votes
2
replies
972
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 16 months ago by 43k • written 19 months ago by • 0
4
votes
5
replies
1.4k
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 11 months ago by 43k • written 18 months ago by • 0
2
votes
1
reply
866
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 15 months ago by 6.4k • written 18 months ago by ▴ 30
3
votes
6
replies
1.1k
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 11 months ago by 43k • written 19 months ago by 6.2k
2
votes
3
replies
945
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 19 months ago by 22k • written 19 months ago by ▴ 10
19
votes
13
replies
2.6k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 19 months ago by 6.5k • written 19 months ago by ▴ 40
8
votes
13
replies
2.8k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 19 months ago by • 0 • written 19 months ago by ★ 1.4k
4
votes
4
replies
1.4k
views
Forum: Bioinformatics analogies
Bioinformatics
updated 19 months ago by 100k • written 20 months ago by ▴ 60
2
votes
4
replies
1.2k
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 13 months ago by 43k • written 20 months ago by ▴ 230
2
votes
4
replies
1.0k
views
Forum: strand specific data
strand DNA RNA specific coding
20 months ago by upasana • 0
3
votes
0
replies
814
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
20 months ago by LauferVA 4.2k
7
votes
14
replies
2.4k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 20 months ago by 3.9k • written 20 months ago by ▴ 90
4
votes
4
replies
1.4k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 16 months ago by 43k • written 22 months ago by ★ 2.5k
2
votes
7
replies
1.3k
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 21 months ago by 43k • written 21 months ago by ▴ 20
6
votes
3
replies
2.3k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 21 months ago by 4.5k • written 21 months ago by 19k
0
votes
1
reply
630
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 21 months ago by 82k • written 21 months ago by • 0
4
votes
2
replies
1.9k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 16 months ago by 43k • written 21 months ago by 4.2k
0
votes
0
replies
742
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
21 months ago by goddy93 • 0
3
votes
1
reply
692
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 21 months ago by 43k • written 21 months ago by • 0
5
votes
2
replies
1.6k
views
Forum: Skills for industry career in bioinformatics
industry
updated 21 months ago by 13k • written 21 months ago by ▴ 10
9
votes
6
replies
1.3k
views
Forum: Programming languages in industry
programming language
updated 21 months ago by 9.7k • written 21 months ago by ▴ 30
2
votes
6
replies
1.3k
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
22 months ago by Antonio R. Franco ★ 5.1k
1
vote
0
replies
791
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
22 months ago by Francesco ▴ 20
3
votes
2
replies
847
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 10 months ago by 43k • written 22 months ago by ▴ 50
0
votes
0
replies
754
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 16 months ago by 43k • written 22 months ago by ▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 17 months ago by 43k • written 5.7 years ago by ★ 9.4k
7
votes
8
replies
1.6k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by 43k • written 23 months ago by 2.8k
0
votes
0
replies
645
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 16 months ago by 43k • written 23 months ago by ★ 1.5k
1
vote
3
replies
2.5k
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 23 months ago by 3.9k • written 23 months ago by • 0
3
votes
3
replies
936
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 23 months ago by 27k • written 23 months ago by ★ 2.9k
0
votes
0
replies
375
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 16 months ago by 43k • written 23 months ago by ▴ 20
0
votes
2
replies
1.1k
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 23 months ago by 54k • written 23 months ago by ▴ 980
34
votes
11
replies
9.3k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 20 months ago by 43k • written 8.5 years ago by ★ 9.4k
6
votes
8
replies
3.0k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
23 months ago by stan.aanhane ▴ 30
2
votes
3
replies
928
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 16 months ago by 43k • written 23 months ago by ▴ 30
2
votes
2
replies
944
views
Forum: Project ideas
project-ideas
updated 23 months ago by 54k • written 23 months ago by • 0
0
votes
0
replies
577
views
Forum: Beagle5 imputation accuracy
beagle5 DR2 imputation impute2 impute-info
23 months ago by ch333 • 0
1
vote
6
replies
1.1k
views
Forum: Bioinformatics Software Developer job interview steps and what to expect?
interview software-development
updated 22 months ago by 43k • written 24 months ago by • 0
2
votes
2
replies
780
views
Forum: What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS GWAS WGS
updated 16 months ago by 43k • written 24 months ago by • 0
5
votes
5
replies
1.1k
views
Forum: Best book introducing R programming?
coding R
24 months ago by Scottie ▴ 10
4
votes
6
replies
1.5k
views
Forum: How relevant are read numbers in FastQ headers for paired reads?
header fastq number read
24 months ago by Matthias Zepper 4.5k
0
votes
0
replies
623
views
Forum: commonly-used bioinformatics pipeline
Galaxy
updated 16 months ago by 43k • written 2.0 years ago by ▴ 120
0
votes
0
replies
562
views
Forum: Master's topic in Bioinformatics
Bio-informatique
2.0 years ago by Badji Oumar • 0
13
votes
15
replies
3.4k
views
8 follow
Forum: Biostar under spam attack - restrictions added to post content and title
meta biostars
updated 14 months ago by 43k • written 8.8 years ago by 100k
0
votes
1
reply
778
views
Forum: Retrieve SCCM data for client software distribution serviceNow
training servicenow online
2.0 years ago by hkrtrainings408 • 0
47
votes
24
replies
6.5k
views
15 follow
Forum: What's fascinating about Bioinformatics for potential students?
career msc
updated 16 months ago by 43k • written 6.5 years ago by 54k
5
votes
8
replies
2.7k
views
Forum: SQL-why do we need it in Bioinformatics ?
SQL Programming
updated 16 months ago by 43k • written 2.1 years ago by ▴ 10
1,000 results • Page 3 of 20
Recent Votes
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
Detecting somatic variants in non-tumor tissue without normals
Answer: Sequence read length shorter than flow cell specification
Answer: Sequence read length shorter than flow cell specification
Comment: Why gatk VariantAnnotator required bam and coverage files
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
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Recent Awards • All
Scholar to ATpoint 82k
Popular Question to zdiazmar ▴ 30
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Recent Replies
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix by Ram 43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package by DKA ▴ 40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis by ATpoint 82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets by ATpoint 82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files by QX • 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis by kilcdincer ▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases by GenoMax 141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases by 5heikki 11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work? by Bioinfotec ▴ 10
I think when you give indent to seuObj : Idents(seuObj) <- 'RNA_snn_res.0.1' You may wrongly assign other value to it such as …
Answer: ScRNAseq-How to correctly choose cell type marker genes by Bioinfotec ▴ 10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question by Bioinfotec ▴ 10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification by GenoMax 141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing by rohitsatyam102 ▴ 850
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K). | …
Answer: Sequence read length shorter than flow cell specification by ATpoint 82k
It is the amount of reagent in the kit that determines read length. Sometimes index cycle reagents are allocated to R1/R2 or they used anot…
Comment: Why gatk VariantAnnotator required bam and coverage files by Pierre Lindenbaum 161k
you don't need the bam file https://gatk.broadinstitute.org/hc/en-us/articles/13832654601755-VariantAnnotator : VariantAnnotator …
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