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Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scRNA llm
12 hours ago by yxwucq • 0
4
votes
2
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270
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Forum: Bioinformatics: Where do I start
Sequencing
updated 7 days ago by 43k • written 7 days ago by ▴ 10
7
votes
7
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1.0k
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Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 8 days ago by ★ 2.5k • written 8 days ago by • 0
1
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2
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327
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Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
6 days ago by Javier • 0
16
votes
10
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1.0k
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6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 25 days ago by 5.3k • written 26 days ago by ★ 2.4k
1
vote
1
reply
211
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Forum: Can I use this community for software development?
software-development
updated 29 days ago by 43k • written 29 days ago by • 0
5
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2
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374
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Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 29 days ago by 54k • written 29 days ago by • 0
103
votes
42
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31k
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34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 14 days ago by 22k • written 10.4 years ago by ★ 3.6k
12
votes
7
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7.0k
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Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 29 days ago by ★ 5.8k • written 2.6 years ago by ▴ 70
12
votes
14
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2.4k
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8 follow
Forum: Recovering bam files after unknown deletion in the storage
photorec bam sequencing
written 4.9 years ago by ▴ 70
10 results • Page 1 of 1
Recent Votes
Am I crazy, or are most published RNA-seq studies vastly underpowered?
Trimming sequences based on NCBI contamination screen report
warning[vg::giraffe]: Cannot cluster reads with a fragment distance smaller than read distance
Answer: Redirection of Duplicate PMIDs
Answer: How to convert plink files to Hapmap Format
Answer: How to convert plink files to Hapmap Format
Comment: Redirection of Duplicate PMIDs
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Scholar to marco.barr ▴ 80
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Recent Replies
Comment: How to convert plink files to Hapmap Format by bk11 ★ 2.3k
What type of phenotype is in your data? It looks like it does not have affection status (default values for affection status will be: 1 = u…
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
Agree. This is also a great solution that flips the problem on its head, as it were, Dominick. I dont want to be preachy, but this is why i…
Answer: Redirection of Duplicate PMIDs by GenoMax 141k
Using [**EntrezDirect**][1] this may be much simpler if you have the grant number available. I tested this with a couple of random grants …
Answer: Redirection of Duplicate PMIDs by LauferVA 4.2k
Hi Dominick, One thing I am not sure of is, how is it that you got the other PMID in the first place? The reason I ask is that you mentio…
Comment: How to convert plink files to Hapmap Format by Sofia • 0
Thanks Marco, btw do you have any idea why I get this "Warning: Skipping --assoc/--model since less than two phenotypes are present." aft…
Comment: Subset Seurat object from Xenium spatial data by bk11 ★ 2.3k
For subsetting a sample, you can do something like this- Idents(seuratObj) <- "orig.ident" subj1 <- c("subject_1") subj1_seur…
Comment: Redirection of Duplicate PMIDs by LauferVA 4.2k
Ok! I have a recommendation. I'll submit it as an answer, pending your feedback. vincent
Comment: DYH17 Structure Prediction by anasjamshed ▴ 120
In modeller we need to use templates as well.so 63% is acceptable
Comment: DYH17 Structure Prediction by Ram 43k
Mensur said > The latter option assumes you know how to use Modeller Do you know how to use Modeller? I vaguely recall there being a mini…
Comment: Should I remove unlocalized scaffols in reference genome before alignment? by GenoMax 141k
OP is working with long reads so the chances of reads aligning to unlocalized scaffolds are relatively small. Doing some testing may be suf…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks? by ATpoint 81k
I personally think that comparing the same peak between conditions is meaningful and comparing peaks within the same sample is not.
Comment: Should I remove unlocalized scaffols in reference genome before alignment? by ATpoint 81k
These regions are present in the genome and removing them might incorrectly redirect alignments to known genes. I don't see why you would r…
Comment: Should I remove unlocalized scaffols in reference genome before alignment? by njornet ▴ 20
Ok thank you! Do you know if there is an easy way of doing so with ncbi-genome-download or I need to use another tool?
Comment: Using vg gamsort with naive sorting algorithm by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Redirection of Duplicate PMIDs by dominickd • 0
The scope is all publications related to grants from an NIH award program. There are currently ~120k publications in total (about a few hun…
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