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1,000 results • Page 3 of 20
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Forum: UniProt survey about programmatic access
documentation api survey uniprot
updated 16 months ago by 154k • written 16 months ago by ★ 2.2k
4
votes
9
replies
1.9k
views
Forum: 100% variance explained on one PC in DESeq2 PCA?
RNA-Seq DESeq2
16 months ago by melatoninixo ▴ 10
9
votes
9
replies
2.0k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
16 months ago by bernhard.liebl ▴ 30
0
votes
1
reply
444
views
Forum: Statistical methods Books Recommendation
Books Recommendation
updated 16 months ago by 72k • written 16 months ago by ▴ 110
0
votes
0
replies
303
views
Forum: Is there any limitation for number of samples in AUC analysis ?
curves ROC
16 months ago by sabaghianamir70 ▴ 70
6
votes
5
replies
3.7k
views
6 follow
Forum: How is the job outlook in 2020 ?
career outlook
updated 11 months ago by 39k • written 4.9 years ago by • 0
6
votes
5
replies
807
views
6 follow
Forum: Usability of depiction of individual reads in genome browser visualization
visualization browser genome
updated 16 months ago by 98k • written 16 months ago by ▴ 580
4
votes
7
replies
1.4k
views
Forum: Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase Cassandra MongoDB Data-Lake
updated 16 months ago by ★ 3.2k • written 16 months ago by ▴ 110
361
votes
57
replies
61k
views
43 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
updated 8 months ago by 85k • written 13.2 years ago by 98k
9
votes
8
replies
4.6k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 11 weeks ago by 39k • written 8.0 years ago by ★ 2.1k
7
votes
2
replies
1.2k
views
Forum: What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp papers survey
updated 3 months ago by 39k • written 17 months ago by ★ 1.2k
0
votes
1
reply
565
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
Bioinformatics
updated 17 months ago by 72k • written 17 months ago by ★ 2.3k
24
votes
11
replies
3.3k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 17 months ago by 7.9k • written 17 months ago by • 0
0
votes
4
replies
602
views
Forum: Terms (like atlas, map, and archive) on database description
database
17 months ago by bioinformaticsBoy ▴ 10
2
votes
2
replies
562
views
Forum: How much are companies willing to pay for microbiome data?
NGS metagenomics microbiome
17 months ago by maa4618 • 0
19
votes
1
reply
3.7k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 11 weeks ago by 72k • written 2.3 years ago by ▴ 300
6
votes
7
replies
1.0k
views
Forum: How to change my email address
meta biostars
updated 17 months ago by • 0 • written 2.3 years ago by ▴ 50
9
votes
11
replies
2.5k
views
6 follow
Forum: 2021: state and usage of compressed file standards better than BAM and FASTQ
bam compression fastq
updated 10 months ago by ▴ 100 • written 2.1 years ago by ★ 5.2k
7
votes
3
replies
2.7k
views
Forum: Trimming tools - your experience please?
trimming
updated 18 months ago by 17k • written 18 months ago by ▴ 20
8
votes
9
replies
1.4k
views
Forum: Most useful public genomic/genetic databases/tools/applications
public-data genomics Genetics open-access
updated 3 months ago by 39k • written 18 months ago by ▴ 520
74
votes
14
replies
28k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 11 months ago by 39k • written 13.0 years ago by 4.5k
6
votes
3
replies
835
views
Forum: Computational Biology Conference
biology computational science research conference
updated 18 months ago by 47k • written 18 months ago by ▴ 730
0
votes
1
reply
537
views
Forum: UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC TACC HPC Cambridge-1
updated 18 months ago by 129k • written 18 months ago by ★ 9.3k
0
votes
1
reply
515
views
Forum: Official/centralized/designated genetic/biological knowledge graph?
knowledge graph
updated 18 months ago by 8.4k • written 18 months ago by • 0
0
votes
0
replies
377
views
Forum: Targeted sequencing and phylogenetics
SC sequencing exome gene_panel
updated 3 months ago by 39k • written 18 months ago by • 0
2
votes
7
replies
2.5k
views
Forum: M1 Pro/Max and future
Max M1 M2 Pro Mac
updated 19 months ago by 129k • written 19 months ago by ▴ 20
21
votes
8
replies
4.4k
views
Forum: Is there ever a good reason to use a log transformation instead of Box-Cox?
data skew transformation power
updated 19 months ago by 98k • written 19 months ago by ★ 23k
6
votes
2
replies
592
views
Forum: Biology undergraduate looking for mentor
computational-biology Biology mentor Toronto
updated 19 months ago by 39k • written 19 months ago by • 0
1
vote
7
replies
1.1k
views
Forum: Does it matter where I get my PhD? I am currently a masters student.
advice PhD Masters
19 months ago by nickroseae ▴ 10
16
votes
7
replies
1.6k
views
Forum: Will a user #100000 get Tesla Model 3?
milestone
updated 19 months ago by 98k • written 19 months ago by ★ 23k
2
votes
8
replies
1.3k
views
Forum: Non biology & computer professional interested in bioinformatics
computer-science machine-learning
updated 3 months ago by 39k • written 19 months ago by • 0
0
votes
0
replies
459
views
Forum: PhD Bioinformatics Remote positions
PhD
updated 11 months ago by 39k • written 19 months ago by ▴ 10
1
vote
0
replies
576
views
Forum: Questions about going into Bioinformatics from an IT career
career
updated 11 weeks ago by 39k • written 20 months ago by ▴ 10
0
votes
0
replies
372
views
Forum: chimeric vs unaligned reads
alignment star reads chimeric
20 months ago by Galileo ▴ 10
0
votes
11
replies
1.7k
views
Forum: Can exons from different reading frames coexist in a peptide sequence?
prediction splicing codons protein exons
updated 20 months ago by 13k • written 20 months ago by ▴ 80
294
votes
27
replies
42k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 10 months ago by 39k • written 7.3 years ago by ★ 2.4k
0
votes
4
replies
1.5k
views
Forum: Is there really a difference in blastn -task blastn and -task megablast when dealing with unmapped reads?
blastn
20 months ago by DNAngel ▴ 240
3
votes
4
replies
906
views
Forum: For what command-line programs or workflows, do you need a graphical user interface for?
GUI
updated 20 months ago by ★ 3.2k • written 20 months ago by ▴ 310
7
votes
3
replies
1.5k
views
Forum: Misuse of RPKM or TPM normalization when comparing across samples and sequencing protocols
fpkm paper tpm
updated 20 months ago by 72k • written 20 months ago by ▴ 20
0
votes
0
replies
394
views
Forum: Extraction of s-farnesyl cysteine, s-palmitoyl cysteine, disulfide , metal binding
uniprot
updated 6 months ago by 39k • written 20 months ago by ▴ 10
37
votes
30
replies
4.1k
views
7 follow
Forum: Spam In Rss Feeds
meta RSS
updated 3 months ago by 39k • written 10.3 years ago by 5.3k
4
votes
8
replies
1.3k
views
Forum: Troubleshooting Tips - bcl2fastq creates duplicate reads
bcl2fastq duplicates readgroup demultiplex
20 months ago by DavidStreid ▴ 80
3
votes
1
reply
621
views
Forum: Which bioinformatics tool would you love to see running much faster?
Algorithm optimisation
updated 20 months ago by 35k • written 20 months ago by • 0
2
votes
2
replies
597
views
Forum: Biostars metadata
Biostars metadata
20 months ago by grant.hovhannisyan ★ 2.5k
10
votes
3
replies
4.3k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 20 months ago by ★ 4.2k • written 21 months ago by ▴ 20
0
votes
2
replies
551
views
Forum: How do I use a small font size in questions and answers?
fonts
updated 21 months ago by 98k • written 21 months ago by • 0
0
votes
0
replies
397
views
Forum: Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR
RNA-Seq microarray qRT-PCR
21 months ago by Antonio R. Franco ★ 5.1k
16
votes
10
replies
5.5k
views
10 follow
Forum: Linearize fasta files
fasta code-golf
updated 21 months ago by ▴ 80 • written 4.3 years ago by 16k
1
vote
1
reply
857
views
Forum: What are some of the problems faced by bioinformaticians because the wet lab personell couldn't understand how data analysis was done?
Problems Bioinformaticians wetlab NGS
updated 21 months ago by ▴ 590 • written 21 months ago by ▴ 10
2
votes
2
replies
723
views
Forum: Internship in research
python genomics
21 months ago by vaishnavi ▴ 80
1,000 results • Page 3 of 20
Recent Votes
Comment: Regular Expression for conversion
Answer: RNAseq Data and Pipeline
Comment: Salmon Index
Comment: Salmon Index
Resequencing data of pangenome
A: PolyPhen Humdiv vs HumVar discrepancies
A: How To Get Annotation For Bed File From Another Bed File
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Recent Replies
Comment: How to make a dotplot for bulk RNA average expression ? by bhumm ▴ 40
I am not entirely clear on what you are trying to accomplish, but based on @Trivas answer, I would first transform the data relative to ave…
Answer: What is the best way to clean bulk RNA-seq data? by swbarnes2 13k
There really is no "best". Just find something reasonable, and document what you chose.
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
ok interesting. Do all, most, some, or a few of the genes have repeated lines. Is there a handy link to the exact file you are looking at?
Answer: Make a BedGraph file by bhumm ▴ 40
Bedtools window piped into genomecov? https://bedtools.readthedocs.io/en/latest/content/tools/window.html https://bedtools.readthedocs.io…
Answer: RNAseq Data and Pipeline by ATpoint 72k
STAR counts are the raw counts, that is appropriate for DESeq2.
Comment: RNAseq Data and Pipeline by swbarnes2 13k
STAR has a GeneCounts output that looks as you describe; three columns, depending on whether one thinks the prep is unstranded, or stranded…
Comment: RNAseq Data and Pipeline by Ram 39k
There is at least one more step that you haven't shared, isn't there? This line alone does not get you the data. You don't need to give us …
Comment: RNAseq Data and Pipeline by turcoa1 • 0
my entire code is not done. All I am trying to understand is if the STAR - counts downloaded from this query have raw reads. There are head…
Comment: RNAseq Data and Pipeline by Ram 39k
Please provide your entire code so those of us wishing to do a quick test can download and check for ourselves. Also, please use the format…
Comment: RNAseq Data and Pipeline by turcoa1 • 0
```r query <- GDCquery( project = "TCGA-THCA", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantificatio…
Comment: NCBI Common Taxonomy Tree by GenoMax 129k
It may be best to email NCBI help desk with these questions. Post their response here once you hear back from them.
Comment: RNAseq Data and Pipeline by Ram 39k
What data are you downloading? Can you show us your GDCquery commands please?
Comment: Salmon Index by ashleymb1116 • 0
I am working on cow, Bos Taurus. The Arabidopsis code was an example code that was on Salmon's github and an example for indexing they gave…
Comment: Salmon Index by GenoMax 129k
> I am using the Bos Taurus files Which organism are you actually working on? You have mentioned three so far, arabidopsis, human and now …
Comment: Salmon Index by ashleymb1116 • 0
Thank you, yes I am using the newer version of Ensembl. Above with Arabidopsis is the example Salmon gave, I am using the Bos Taurus files.…
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