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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 10 months ago by
Ram
43k • written 18 months ago by
iraun
6.2k
2
votes
3
replies
924
views
Forum:
Experiences with different cloud computing resources / providers
cloud
pipeline
rna-seq
alignment
updated 18 months ago by
Jeremy Leipzig
22k • written 18 months ago by
mjd79
▴ 10
19
votes
13
replies
2.5k
views
8 follow
Forum:
Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 18 months ago by
Rob
6.5k • written 18 months ago by
tsomakiank
▴ 40
8
votes
13
replies
2.7k
views
8 follow
Forum:
Commercial software for genomics / NGS / bioinformatics
NGS
software
genomics
updated 18 months ago by
artem barski
• 0 • written 18 months ago by
liorglic
★ 1.3k
4
votes
4
replies
1.3k
views
Forum:
Bioinformatics analogies
Bioinformatics
updated 19 months ago by
Istvan Albert
100k • written 19 months ago by
melissachua90
▴ 60
2
votes
4
replies
1.2k
views
Forum:
Is low N in-vivo research a blind spot for RNA-seq?
statistics
metascience
power
sample-size
updated 12 months ago by
Ram
43k • written 19 months ago by
telroyjatter
▴ 220
2
votes
4
replies
975
views
Forum:
strand specific data
strand
DNA
RNA
specific
coding
19 months ago by
upasana
• 0
3
votes
0
replies
790
views
Forum:
Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology
RTK
IC50
TKI
database
19 months ago by
LauferVA
4.1k
7
votes
14
replies
2.3k
views
7 follow
Forum:
Why isn't GWAS used in oncology?
gwas
association
oncology
studies
somatic
cancer
updated 19 months ago by
LChart
3.9k • written 19 months ago by
Kermit
▴ 90
4
votes
4
replies
1.3k
views
Forum:
Cloud Computing Services available?
resources
Cloud-Computing
updated 15 months ago by
Ram
43k • written 21 months ago by
carlopecoraro2
★ 2.4k
2
votes
7
replies
1.3k
views
Forum:
Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R
plot
rna-seq
count
updated 20 months ago by
Ram
43k • written 20 months ago by
ali
▴ 20
6
votes
3
replies
2.1k
views
Forum:
Best formats for storing large amounts of data for random access
file-formats
databases
updated 20 months ago by
Matthias Zepper
4.5k • written 20 months ago by
i.sudbery
18k
0
votes
1
reply
609
views
Forum:
Add an intercept column to a bed file
plink
intercept
bed
updated 20 months ago by
ATpoint
81k • written 20 months ago by
kai.yang2
• 0
4
votes
2
replies
1.9k
views
Forum:
Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology
teaching
updated 15 months ago by
Ram
43k • written 20 months ago by
LauferVA
4.1k
0
votes
0
replies
724
views
Forum:
Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq
normalization
RPGC
Spikein
Normalization
20 months ago by
goddy93
• 0
3
votes
1
reply
677
views
Forum:
Would an automated NGS analytics platform help research?
ngs
data-analysis
updated 20 months ago by
Ram
43k • written 20 months ago by
Mandar Sahasrabuddhe
• 0
5
votes
2
replies
1.5k
views
Forum:
Skills for industry career in bioinformatics
industry
updated 20 months ago by
rpolicastro
13k • written 20 months ago by
m.engalla
▴ 10
9
votes
6
replies
1.2k
views
Forum:
Programming languages in industry
programming
language
updated 21 months ago by
Medhat
9.7k • written 21 months ago by
m.monikus
▴ 30
2
votes
6
replies
1.2k
views
Forum:
Getting the best of RNA-Seq
RNA-Seq
isoform
gene
expression
21 months ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
757
views
Forum:
Not all Over Representation Analyses are the same!
clusterProfiler
Analysis
fisher
hypergeometric
ORA
Pathway
21 months ago by
Francesco
▴ 20
3
votes
2
replies
825
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 9 months ago by
Ram
43k • written 21 months ago by
BioInfoBeginner
▴ 50
0
votes
0
replies
731
views
Forum:
Best practices for merging vcfs with different positions + different samples?
vcf
bcftools
genotypes
updated 15 months ago by
Ram
43k • written 21 months ago by
pabe
▴ 30
24
votes
6
replies
4.9k
views
6 follow
Forum:
Awk in Bioinformatics
perl
awk
shell
updated 16 months ago by
Ram
43k • written 5.6 years ago by
Shicheng Guo
★ 9.4k
7
votes
8
replies
1.5k
views
Forum:
Can we lock posts related to merging vcf files?
vcf
updated 16 months ago by
Ram
43k • written 22 months ago by
4galaxy77
2.8k
0
votes
0
replies
632
views
Forum:
Bioinformatics for understanding cancer and other diseases
cancer
omics
updated 15 months ago by
Ram
43k • written 22 months ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
2.4k
views
Forum:
What counts as a valid biological replicate in single cell RNAseq?
statistics
biological
replicates
scRNA-seq
updated 22 months ago by
benformatics
3.9k • written 22 months ago by
david.ferenbach
• 0
3
votes
3
replies
902
views
Forum:
Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany
PostDoc
updated 22 months ago by
Jean-Karim Heriche
27k • written 22 months ago by
German.M.Demidov
★ 2.9k
0
votes
0
replies
355
views
Forum:
Can Bioinformatics be used in developing a product?
product
company
business
updated 15 months ago by
Ram
43k • written 22 months ago by
user366312
▴ 20
0
votes
2
replies
1.1k
views
Forum:
Bioinformatics algorithm tutorials in C++/C
protein
gene
genome
updated 22 months ago by
Michael
54k • written 22 months ago by
sunnykevin97
▴ 980
34
votes
11
replies
9.2k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 19 months ago by
Ram
43k • written 8.4 years ago by
Shicheng Guo
★ 9.4k
6
votes
8
replies
2.9k
views
Forum:
PC build for Nanopore data analysis
python
PC
pipeline
nanopore-sequencing
22 months ago by
stan.aanhane
▴ 30
2
votes
3
replies
888
views
Forum:
What is difference between Bioinformatics and Data Science?
Data-Science
updated 15 months ago by
Ram
43k • written 22 months ago by
Ssonia
▴ 30
2
votes
2
replies
918
views
Forum:
Project ideas
project-ideas
updated 22 months ago by
Michael
54k • written 22 months ago by
nivedha
• 0
0
votes
0
replies
563
views
Forum:
Beagle5 imputation accuracy
beagle5
DR2
imputation
impute2
impute-info
22 months ago by
ch333
• 0
1
vote
6
replies
1.0k
views
Forum:
Bioinformatics Software Developer job interview steps and what to expect?
interview
software-development
updated 21 months ago by
Ram
43k • written 23 months ago by
d
• 0
2
votes
2
replies
747
views
Forum:
What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS
GWAS
WGS
updated 15 months ago by
Ram
43k • written 23 months ago by
ehsanmofidichelan
• 0
5
votes
5
replies
1.0k
views
Forum:
Best book introducing R programming?
coding
R
23 months ago by
Scottie
▴ 10
4
votes
6
replies
1.5k
views
Forum:
How relevant are read numbers in FastQ headers for paired reads?
header
fastq
number
read
23 months ago by
Matthias Zepper
4.5k
0
votes
0
replies
611
views
Forum:
commonly-used bioinformatics pipeline
Galaxy
updated 15 months ago by
Ram
43k • written 23 months ago by
anasjamshed
▴ 120
0
votes
0
replies
546
views
Forum:
Master's topic in Bioinformatics
Bio-informatique
23 months ago by
Badji Oumar
• 0
13
votes
15
replies
3.3k
views
8 follow
Forum:
Biostar under spam attack - restrictions added to post content and title
meta
biostars
updated 13 months ago by
Ram
43k • written 8.7 years ago by
Istvan Albert
100k
0
votes
1
reply
728
views
Forum:
Retrieve SCCM data for client software distribution serviceNow
training
servicenow
online
23 months ago by
hkrtrainings408
• 0
47
votes
24
replies
6.4k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 15 months ago by
Ram
43k • written 6.4 years ago by
Michael
54k
5
votes
8
replies
2.6k
views
Forum:
SQL-why do we need it in Bioinformatics ?
SQL
Programming
updated 15 months ago by
Ram
43k • written 24 months ago by
iibrams07
▴ 10
6
votes
7
replies
1.1k
views
Forum:
Generic avatars, not gravatars?
technical
avatar
24 months ago by
Michael
54k
5
votes
0
replies
2.8k
views
Forum:
Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat
scrnaseq
2.0 years ago by
rohitsatyam102
▴ 840
0
votes
0
replies
522
views
Forum:
Phylogenomics in the presence of gene flow
hybridisation
introgression
gene-flow
Phylogenomics
2.0 years ago by
jeronimocid93
• 0
2
votes
2
replies
970
views
Forum:
Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs
bioinformatician
updated 21 months ago by
Ram
43k • written 2.0 years ago by
Marcela
▴ 20
15
votes
11
replies
4.6k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 10 months ago by
Ram
43k • written 2.0 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
463
views
Forum:
CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2
counts
circRNA
2.0 years ago by
akamonto
• 0
1,000 results • Page
3 of 20
Recent Votes
Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
Quantile normalizing prior to or after TPM scaling?
Structural variant filtering
Trouble with bedtools getfasta
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
Answer: Hybrid assembly Pacbio- Nanopore
C: Why is 0/0 homozygous reference call in VCF useful information?
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Recent Replies
Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
by
Pierre Lindenbaum
160k
I downsampled the bams and it works now...
Answer: ONT direct RNA sequencing
by
dthorbur
★ 1.7k
You can check the validity of gzipped files using `gzip -v -t file.gz`. Should look something like this: ``` $ gzip -v -t test_file.…
Comment: Nanopore data filtering using fastp
by
emilydolivo97
• 0
I tested seqtk sample but I generate a wird result. Can I share my code and results with you please ?
Comment: Nextflow ERROR : Timeout waiting for connection from pool
by
GenoMax
140k
As best as I can tell it is a combination of things. Did you try setting `export NXF_ENABLE_VIRTUAL_THREADS="true"` in your shell? You also…
Comment: Coverage observed in introns in the Knockdown genes but not in knockout genes
by
rohitsatyam102
▴ 840
As per the image below obtained by Running RNASeQC the intronic reds aren't that much (See the knockdown samples enclosed in the Red box) (…
Comment: Parsing fasta file by coordinates
by
Joe
21k
Am I understanding this correctly, that what you are looking for is any sequence where *any part* of the coord range overlaps with *any oth…
Comment: convert cds to seurat object
by
edoardofilippi1998
• 0
Did you check the data in the assay of the cell_data_set object?
Comment: calculate mismatch rate from VCF file
by
Pierre Lindenbaum
160k
use the output of `samtools mpileup`
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
by
ATpoint
81k
It's `-log10(pvalue)`, you miss the minus. Some people use indeed pvalue, but since you're filtering on padj, I would show `-log10(padj)` r…
Comment: calculate mismatch rate from VCF file
by
Dora
▴ 10
Thank you for your reply!! My bad. I didn't mention that I want to get the mismatch rate for each site. Is this error rate for each site?
Comment: Interproscan taking so much time
by
dthorbur
★ 1.7k
Parallelize. Chunk your transcriptome into groups of something like 5000 (or less if you want it to go faster), and run an array across you…
Comment: Nanopore data filtering using fastp
by
dthorbur
★ 1.7k
Ah, sorry, I was thinking of the wrong command. You can either use `seqtk sample` or `seqkit sample`. I would recommend the former if your …
Comment: Variant calling of GBS data
by
analyst
▴ 10
It does not output warning when I skip flags for MQRankSum and ReadPosRankSum **java -jar -Xmx30G gatk.jar VariantFiltration -R reference…
Comment: Merging featureCounts output for different species
by
andrebolerbarros
• 0
Is there any list of homology you could use for this merging? Maybe this would be helpful
Comment: Variant calling of GBS data
by
Pierre Lindenbaum
160k
again, remove the spaces " "SOR > 10." -> " "SOR>10"
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