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1,000 results • Page
3 of 20
Sort: Votes
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Views
Votes
Replies
47
votes
14
replies
5.1k
views
Forum:
Was FASTA ever popular?
FASTA
alignment
updated 12 months ago by
Ram
43k • written 7.5 years ago by
John
13k
46
votes
12
replies
36k
views
6 follow
Forum:
BWA vs Bowtie 2 (Poll)
BWA
Poll
Bowtie2
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Irene@Sequencing.com
▴ 270
46
votes
9
replies
8.5k
views
10 follow
Forum:
Bioinformatics For Clinicians - What To Teach Them?
education
updated 13 months ago by
Ram
43k • written 10.3 years ago by
j
▴ 140
45
votes
19
replies
2.8k
views
9 follow
Forum:
Where and how NGS techniques are heading for the next 5 years?
next-gen
NGS
updated 11 months ago by
Ram
43k • written 6.9 years ago by
lakhujanivijay
5.8k
45
votes
35
replies
6.1k
views
12 follow
Forum:
looking for a bioinformatics project to do during military rotation
military
updated 22 months ago by
Ram
43k • written 6.6 years ago by
hasani.iut6
▴ 60
45
votes
23
replies
6.3k
views
6 follow
Forum:
biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat
slack
updated 14 months ago by
Ram
43k • written 6.1 years ago by
Devon Ryan
104k
44
votes
11
replies
5.2k
views
7 follow
Forum:
Asking The Developers Before Asking Biostars
meta
updated 13 months ago by
Ram
43k • written 10.6 years ago by
Arnaud Ceol
▴ 860
44
votes
11
replies
2.8k
views
6 follow
Forum:
Why can't we downvote on this forum?
meta
biostars
updated 12 months ago by
Ram
43k • written 7.4 years ago by
devenvyas
▴ 740
43
votes
37
replies
2.5k
views
7 follow
Forum:
Checking the quality and reliability in bioinformatics
reproducibility
updated 11 months ago by
Ram
43k • written 6.5 years ago by
zizigolu
★ 4.3k
43
votes
16
replies
4.6k
views
10 follow
Forum:
Need Advice On How To Become A Senior Bioinformatician
advice
career
updated 13 months ago by
Ram
43k • written 10.9 years ago by
calicruz206
▴ 30
42
votes
17
replies
38k
views
15 follow
Forum:
List Of Genome Sequencing Centers/Institutes
genomics
institutes
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Malachi Griffith
19k
42
votes
21
replies
15k
views
10 follow
Forum:
A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes
human
selection
updated 13 months ago by
Ram
43k • written 10.1 years ago by
Giovanni M Dall'Olio
28k
42
votes
20
replies
3.4k
views
11 follow
Forum:
What are the most popular NGS tools?
ensembl
NGS
updated 12 months ago by
Ram
43k • written 8.0 years ago by
Emily
23k
42
votes
8
replies
4.7k
views
13 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2017?
sequencing
survey
SNP
updated 14 months ago by
Ram
43k • written 6.3 years ago by
dago
★ 2.8k
42
votes
15
replies
7.7k
views
8 follow
Forum:
Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization
python
r
updated 13 months ago by
Ram
43k • written 11.4 years ago by
Josh Herr
5.8k
41
votes
27
replies
5.9k
views
8 follow
Forum:
Why bioinformaticians need to know programming languages?
Python
R
Programming
updated 11 months ago by
Ram
43k • written 6.9 years ago by
nilo
▴ 90
40
votes
11
replies
7.0k
views
9 follow
Forum:
"An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 13 months ago by
Ram
43k • written 9.8 years ago by
Pawel Szczesny
3.2k
40
votes
11
replies
4.8k
views
6 follow
Forum:
what is next going to happen in bioinformatics?
current-research
updated 23 months ago by
Ram
43k • written 9.1 years ago by
Mo
▴ 920
40
votes
23
replies
4.1k
views
12 follow
Forum:
Why learn programming in bioinformatics?
Programming
updated 10 months ago by
Ram
43k • written 5.6 years ago by
joselu
▴ 110
40
votes
24
replies
3.8k
views
13 follow
Forum:
What programming language do you use the most in your work? Which one do you like the best?
Programming
Python
R
Scripting
updated 13 months ago by
Ram
43k • written 3.2 years ago by
biotrekker
▴ 100
39
votes
25
replies
4.4k
views
9 follow
Forum:
Making a mac book Bioinfo ready (El Capitan)
mac
software-installation
updated 12 months ago by
Ram
43k • written 8.1 years ago by
Eric Normandeau
11k
39
votes
21
replies
13k
views
10 follow
Forum:
Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 10 months ago by
Ram
43k • written 5.5 years ago by
Juke34
8.5k
38
votes
18
replies
4.2k
views
11 follow
Forum:
Should We Have A Biostar Conference Or Meeting?
conference
biostars
updated 14 months ago by
Ram
43k • written 10.8 years ago by
Michael
54k
38
votes
17
replies
3.2k
views
7 follow
Forum:
Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam
bam
samtools
updated 10 months ago by
Ram
43k • written 3.7 years ago by
kojix2
▴ 250
38
votes
31
replies
2.8k
views
10 follow
Forum:
To the Biologists out there: What bioinf tool are you missing?
education
career
updated 12 months ago by
Ram
43k • written 7.7 years ago by
mschmid
▴ 180
38
votes
19
replies
10k
views
10 follow
Forum:
Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 12 months ago by
Ram
43k • written 8.0 years ago by
morovatunc
▴ 550
37
votes
30
replies
5.0k
views
7 follow
Forum:
Spam In Rss Feeds
meta
RSS
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Madelaine Gogol
5.3k
37
votes
13
replies
3.5k
views
6 follow
Forum:
Bringing Back Downvote
meta
updated 13 months ago by
Ram
43k • written 10.9 years ago by
lh3
33k
37
votes
16
replies
4.0k
views
9 follow
Forum:
Sanger sequencing is no longer the gold standard?
Sanger
NGS
updated 11 months ago by
Ram
43k • written 6.5 years ago by
lamteva.vera
▴ 220
36
votes
7
replies
2.9k
views
7 follow
Forum:
What are benefits of Pursuing Bioinformatics over Software Engineering?
career
updated 21 months ago by
Ram
43k • written 8.2 years ago by
graff1994
▴ 10
36
votes
18
replies
8.1k
views
Forum:
How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization
genome-browser
updated 3.0 years ago by
natay
20 • written 11.1 years ago by
Victor Lyuboslavsky
▴ 140
36
votes
2
replies
6.1k
views
Forum:
Brian Haas of the Trinity Assembler uses this
uses-this
updated 13 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
36
votes
39
replies
4.1k
views
11 follow
Forum:
Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast
RNA-Seq
alignment
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.4 years ago by
dhbradshaw
▴ 130
36
votes
34
replies
2.8k
views
9 follow
Forum:
New to bioinformatics.....
gene
updated 11 months ago by
Ram
43k • written 6.1 years ago by
sms.00196
• 0
36
votes
21
replies
19k
views
9 follow
Forum:
What Is Your Favorite Conserved Protein?
protein
conservation
updated 13 months ago by
Ram
43k • written 10.7 years ago by
Mary
11k
36
votes
8
replies
3.6k
views
6 follow
Forum:
Time Management Strategies and Advice for Bioinformaticians
professional-skills
updated 12 months ago by
Ram
43k • written 7.9 years ago by
sviatoslav.kendall
▴ 880
35
votes
21
replies
3.0k
views
11 follow
Forum:
Should you restrict use of your software based on your political views?
software
updated 19 months ago by
Ram
43k • written 8.6 years ago by
Jean-Karim Heriche
27k
35
votes
19
replies
3.7k
views
6 follow
Forum:
For the general public seeking advice from this community
diagnosis
rare-disease
updated 19 months ago by
Ram
43k • written 8.6 years ago by
Mary
11k
35
votes
19
replies
4.0k
views
Forum:
Crowd Sourcing The 'Analysis' Of The 'Big Foot' Genome
bigfoot
genome
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Will
4.5k
34
votes
19
replies
7.9k
views
12 follow
Forum:
Programming Language In Bioinformatics
perl
python
updated 13 months ago by
Ram
43k • written 11.0 years ago by
AndreiR
▴ 260
34
votes
11
replies
9.3k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 20 months ago by
Ram
43k • written 8.5 years ago by
Shicheng Guo
★ 9.4k
34
votes
8
replies
2.7k
views
9 follow
Forum:
Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv
industry
career
updated 10 months ago by
Ram
43k • written 4.5 years ago by
'
▴ 300
34
votes
23
replies
5.3k
views
8 follow
Forum:
Unbelievably rapid NGS analysis by Churchill
sequencing
NGS
churchill
2.0 years ago by
Ram
43k
34
votes
12
replies
3.7k
views
11 follow
Forum:
How To Change An Expertise In Bioinformatics
career
updated 14 months ago by
Ram
43k • written 13.0 years ago by
Patrick
▴ 220
34
votes
12
replies
11k
views
9 follow
Forum:
Is going back to the wet lab worth it?
careerwet-lab
updated 12 months ago by
Ram
43k • written 7.3 years ago by
ropolocan
▴ 810
34
votes
13
replies
6.1k
views
11 follow
Forum:
Best Way To Learn Bioinformatics For System Level Programmers.
NGS
HPC
updated 13 months ago by
Ram
43k • written 10.2 years ago by
amjadcsu
▴ 90
34
votes
22
replies
2.9k
views
11 follow
Forum:
Have we failed as bioinformatician in this time of COVID-19
Bioinformatician
COVID-19
updated 10 months ago by
Ram
43k • written 3.9 years ago by
heididunst
▴ 10
34
votes
5
replies
2.3k
views
Forum:
what we should reply when we are asked do you have any question?
career
interview
updated 11 months ago by
Ram
43k • written 6.9 years ago by
zizigolu
★ 4.3k
33
votes
26
replies
3.6k
views
7 follow
Forum:
Poll: How many people have PyPy?
pypy
python
updated 12 months ago by
Ram
43k • written 8.1 years ago by
John
13k
33
votes
23
replies
4.1k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 10 months ago by
Jeremy Leipzig
22k • written 10 months ago by
LauferVA
4.2k
1,000 results • Page
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Recent Votes
High fold change values
C: Bcftools Mpileup Removes Marked Duplicates?
Prediction tools summary - zero values
A: Error with Formatdb of legacy blast?
Error with Formatdb of legacy blast?
Answer: How to convert SAM/BAM file to GTF/GFF file?
A: Ribo-seq vs RNA-seq read count
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Comment: ISCN annotation for SV/CN VCF files
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https://res.saletool.cn/vcf/18084521725806
Comment: ISCN annotation for SV/CN VCF files
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https://res.saletool.cn/vcf/18084435127462
Comment: How can I solve this error?
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I want to conduct GWAS meta-analysis using metal software.
Comment: How to reduce the variation of CIBERSORTx results?
by
feather-W
• 0
Hi LChart, Thanks for your reply. Yes, the identical command lines produce different results in CIBERSORTx S-mode. Although I input the da…
Comment: Removing duplicates
by
joe
▴ 490
I *could* imagine an ONT scenario where you'd want to remove duplicates (amplicon-seq, etc) but likely for variant calling there is no need…
Comment: Removing duplicates
by
samuel.a.odonnell
▴ 510
As above, you do not need to worry about duplicates for ONT data Also have you looked at using other tools for variant calling more suited…
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geneontologyhelp
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If you're looking for the GO annotations for *Pediococcus acidilactici*, these are available. Using the instructions under [*2. All other…
Answer: What is the normalization status of metabric data?
by
etiennedanis
▴ 10
I just found an answer to this question here: [https://groups.google.com/g/cbioportal/c/hm_i4jbG1uc/m/h9rNYOvpAAAJ][1] [1]: https://gro…
Comment: Removing duplicates
by
joe
▴ 490
With ONT you will only have PCR duplicates. 'Read' (you mean optical?) duplicates are an artifact of cluster-based sequencing (ie Illumina)…
Comment: assembly using CCS, CLR, CCS_CLR sequences together?
by
GenoMax
141k
PacBio has some recommendations on software for genome assemblies on this page (which you may have seen but just in case): https://www.pacb…
Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
by
swbarnes2
14k
I would not put totally different tissues in the same DESeq object. I don't think that's going to do good things for normalization or disp…
Comment: Removing duplicates
by
quentinperriere
• 0
pcr duplicates or/and read duplicates should I use this command to remove them ? or we don't talk about duplicates when dealing with ONT ??…
Comment: How to reduce the variation of CIBERSORTx results?
by
LChart
3.9k
If you didn't change the input signature matrix, the input RNA matrix, or the input parameters - what did you change? Is the statement that…
Answer: Inconsistency in SNP detection pipelines for multi-sample analysis
by
LChart
3.9k
> To replicate GVCF behavior and avoid issues with 0/0 genotypes appearing as missing, I don't use the -v option I'm not sure what you m…
Comment: Supergnova stuck in tutorial
by
GenoMax
141k
Your best option may be to email the author (and/or the senior author from the paper). Let them know that the FTP links mentioned on GitHub…
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