updated 26 days ago by
Ram
38k
•
written 10.0 years ago by
Istvan Albert
96k
12
votes
6
replies
8.4k
views
9
votes
1
reply
6.2k
views
updated 29 days ago by
Ram
38k
•
written 10.7 years ago by
Obi Griffith
20k
9
votes
5
replies
4.0k
views
updated 25 days ago by
Ram
38k
•
written 9.8 years ago by
Chris Miller
22k
9
votes
5
replies
3.7k
views
8
votes
0
replies
4.4k
views
updated 21 days ago by
Ram
38k
•
written 9.5 years ago by
Chase Miller
▴
410
8
votes
5
replies
2.2k
views
updated 29 days ago by
Ram
38k
•
written 10.7 years ago by
Istvan Albert
96k
8
votes
4
replies
2.2k
views
7
votes
2
replies
2.3k
views
updated 15 days ago by
Ram
38k
•
written 8.9 years ago by
nareshkandakatla7
•
0
6
votes
0
replies
4.1k
views
updated 26 days ago by
Ram
38k
•
written 10.1 years ago by
Chase Miller
▴
410
6
votes
2
replies
4.2k
views
updated 20 days ago by
Ram
38k
•
written 9.2 years ago by
holger.klein
▴
40
6
votes
2
replies
4.5k
views
6
votes
7
replies
3.5k
views
updated 20 days ago by
Ram
38k
•
written 9.3 years ago by
Jeremy Leipzig
21k
6
votes
0
replies
2.9k
views
6
votes
0
replies
3.0k
views
updated 22 days ago by
Ram
38k
•
written 9.8 years ago by
hardik.shah007
▴
60
5
votes
0
replies
3.1k
views
updated 26 days ago by
Ram
38k
•
written 10.4 years ago by
horacio.ditec
▴
50
5
votes
4
replies
3.7k
views
updated 15 days ago by
Ram
38k
•
written 9.0 years ago by
Giovanni M Dall'Olio
27k
5
votes
1
reply
3.1k
views
updated 28 days ago by
Ram
38k
•
written 10.6 years ago by
Istvan Albert
96k
5
votes
2
replies
2.5k
views
5
votes
0
replies
4.2k
views
updated 26 days ago by
Ram
38k
•
written 10.2 years ago by
Manu Prestat
4.1k
5
votes
8
replies
3.0k
views
updated 26 days ago by
Ram
38k
•
written 10.2 years ago by
bespokebioinformatics
•
0
5
votes
0
replies
2.2k
views
updated 20 days ago by
Ram
38k
•
written 9.4 years ago by
zam.iqbal.genome
★
1.8k
4
votes
0
replies
3.2k
views
updated 22 days ago by
Ram
38k
•
written 9.6 years ago by
Istvan Albert
96k
4
votes
1
reply
8.4k
views
updated 12 days ago by
Ram
38k
•
written 8.4 years ago by
Pierre Lindenbaum
153k
4
votes
0
replies
4.2k
views
4
votes
1
reply
3.4k
views
updated 29 days ago by
Ram
38k
•
written 10.7 years ago by
Istvan Albert
96k
4
votes
3
replies
5.1k
views
updated 18 days ago by
Ram
38k
•
written 9.1 years ago by
Pierre Lindenbaum
153k
4
votes
1
reply
2.7k
views
4
votes
2
replies
3.1k
views
updated 26 days ago by
Ram
38k
•
written 10.4 years ago by
Istvan Albert
96k
4
votes
0
replies
5.2k
views
4
votes
0
replies
2.2k
views
4
votes
1
reply
1.8k
views
4
votes
0
replies
4.3k
views
updated 19 days ago by
Ram
38k
•
written 9.2 years ago by
astyanax.mexicanus
▴
40
4
votes
0
replies
2.4k
views
Job:
Staff Scientist And Software Developer - The Genome Institute At Washington University Saint Louis
updated 26 days ago by
Ram
38k
•
written 10.1 years ago by
Chris Miller
22k
4
votes
0
replies
2.5k
views
4
votes
1
reply
2.7k
views
updated 22 days ago by
Ram
38k
•
written 9.6 years ago by
Malachi Griffith
19k
4
votes
2
replies
2.7k
views
4
votes
1
reply
3.7k
views
updated 26 days ago by
Ram
38k
•
written 10.1 years ago by
emc.mcgill
▴
40
3
votes
0
replies
5.0k
views
updated 22 days ago by
Ram
38k
•
written 9.8 years ago by
Larry_Parnell
16k
3
votes
4
replies
2.6k
views
updated 20 days ago by
Ram
38k
•
written 9.4 years ago by
aka.kimberdoodle
▴
30
3
votes
0
replies
2.3k
views
3
votes
3
replies
2.2k
views
updated 15 days ago by
Ram
38k
•
written 8.8 years ago by
venkat.boffin
▴
10
3
votes
1
reply
2.3k
views
updated 12 days ago by
Ram
38k
•
written 8.4 years ago by
sarahhunter
▴
600
3
votes
0
replies
2.7k
views
updated 22 days ago by
Ram
38k
•
written 9.7 years ago by
korbinian.schneeberger
▴
30
3
votes
0
replies
2.2k
views
updated 21 days ago by
Ram
38k
•
written 9.5 years ago by
Simon Cockell
7.4k
3
votes
0
replies
4.4k
views
updated 15 days ago by
Ram
38k
•
written 8.9 years ago by
eivind.valen
▴
30
3
votes
0
replies
2.4k
views
updated 18 days ago by
Ram
38k
•
written 9.1 years ago by
kelly.drescher
▴
60
3
votes
0
replies
3.2k
views
updated 20 days ago by
Ram
38k
•
written 9.4 years ago by
Christophe Dessimoz
▴
740
3
votes
0
replies
3.1k
views
3
votes
2
replies
2.8k
views
3
votes
1
reply
4.0k
views
updated 20 days ago by
Ram
38k
•
written 9.3 years ago by
Andreas Sjödin
▴
90
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
Lithuania, 4 minutes ago
United States, 6 minutes ago
New York, 6 minutes ago
Tehran, 8 minutes ago
United States, 9 minutes ago
United States, 17 minutes ago
Recent Awards •
All
Popular Question to
Emy
▴
40
Popular Question to
paigemiller
•
0
Popular Question to
shpak.max
▴
20
Scholar to
hugo.avila
▴
490
Popular Question to
TheCatalyst
•
0
Recent Replies
Comment: Active enhancers for mm39
by
seidel
11k
Just curious what you mean by "active" enhancers. Enhancers are active in a given context (e.g. cell type developmental state, etc.), and m…
Comment: Creating loop for read groups using Picard
by
ntsopoul
▴
20
try absolute paths
navigate to the directory with cd and use pwd to get the absolute directory.
Comment: how to create interacting Hi-C peaks
by
rheab1230
▴
140
Thank you. I will use this package since I am more familiar with R
Comment: Fastqc report analysis
by
npavliukovec
•
0
Yeah, after trimming and fastqc I will have to generate MultiQC plots and after do mapping with reference genome. As I know, for eukaryotes…
Comment: My fastq files(paired end) have different read number
by
kimgeng
•
0
Oh, I see, Thank you
however, I want to make vcf files with gatk haplotypecaller and GenotypeGVCFs.
But I got some problems
I have about 2.…
Answer: My fastq files(paired end) have different read number
by
ntsopoul
▴
20
Yes, this is normal because depending on how you generate the bam file, the non-aligning reads are saved in the .bam file along the properl…
Answer: Can I use abundance from Tximport to compare the expression level of transcript
by
ntsopoul
▴
20
No, you should not do that since the count matrix is not normalized. Also, the statistics for getting a pValue requires consideration of al…
Comment: Easy way to split VCF file by chromosome
by
Joana
•
0
You need to run bcftools index on your vcf file before running the suggested command.
Comment: Fastqc report analysis
by
ntsopoul
▴
20
I think you are fine, no worries. Will you go ahead an align the fastq files to a genome? Do you know how?
Comment: Fastqc report analysis
by
npavliukovec
•
0
Thanks for your answer, it really helped me. Also, I added --illumina options, because then I checked MultiQC report for all of my samples …
Answer: Fastqc report analysis
by
ntsopoul
▴
20
Hi there,
Cool that you learn to do these things and welcome to the bioinformatic community.
In my opinion, both of the reports look to h…
Comment: Creating loop for read groups using Picard
by
Pierre Lindenbaum
153k
duplicate of https://www.biostars.org/p/9558127/
Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
by
Mensur Dlakic
★
23k
Is there a problem in using program version that produced your top plot?
Unless there is known bug in a program, or a super-useful feature…
Answer: Need help teasing out insertions and deletions with bcftools stats file.vcf > fi
by
Afif Elghraoui
•
0
Not in one step that I could find, but this works:
deletions:
```
bcftools view --types indels --include 'ILEN<0' file.vcf | bcftools …
Traffic: 1671 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6