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Were you ever able to resolve this error? I am having the exact same problem trying to run ipyrad on already demultiplexed fq.gz files
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Depends on the analysis. If you do some sort of gene ratio calculation then probably yes. Batch correction does not affect all genes equall…
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You're using BBTools v39.01. I just added the new flag in 39.06 :)
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Istvan Albert
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in principle you can do a
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LOL...It's a CSV file, and that's all I have in the folder. I agree that it is indeed the stuff of nightmares. But what can I do? It's not …
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jv
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My assumption is that intra-sample comparisons should not require batch effect correction.
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If you have a lot of training data with class labels, as your dataset seems to be you could turn it into an ML classification problem. Gene…
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https://www.biostars.org/u/41501/ please don't delete post that have additional content associated with them
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I think a view as pairs is much cleaner as it shows the actual pairing and how they cross the gap. In the view you show it is not clear whe…
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Thanks for your reply.
The IGV image I show used color alignments by pair orientation, and view mate region in split screen. Blue reads …
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Hi
I know it was more than a year, but I'll just leave the answer here maybe it will help someone.
With the modified code of yours, th…
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