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Installing Joinx on Linux-x86_64

cmake joinx install written 4.3 years ago by njbernstein • 40 • updated 4.3 years ago by ernfrid • 200

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Teacher to genomax ♦ 76k
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Recent Replies

C: Best alignment software for mapping short DNA reads to transcriptome? by genomax ♦ 76k
Have you looked to see if NCBI has any EST datasets you could potentially use as a stand in?
C: how to de novo assemble a large number of bacterial genome with spades in Linux by genomax ♦ 76k
Take [a look at][1] `bash for loops`. Just putting these commands in a loop is not going to mak...
C: how to de novo assemble a large number of bacterial genome with spades in Linux by Rob • 100
Type bash loop in google.
C: RNASeq DEG number changes if I subset the dataset. by mariano.atm • 0
Thank you very much Now my question is How do I know which one is the best approach for me?
C: Complementary strand in cluster generation by Marvin • 150
I have the same question and I don't think the question was really answered. You have a double-st...
C: problem with installing and running bcftools by Pierre Lindenbaum ♦ 125k
its a classical PATH problem: http://www.linfo.org/path_env_var.html ./bcftools filter
C: Is It safe to convert .bam to .fastq and re-do the analysis? by jomagrax • 0
I found the original sequences in the SRA repository, but thanks anyway!!
A: RNASeq DEG number changes if I subset the dataset. by Asaf ♦ 6.7k
DESeq2 uses all the samples to estimate each gene's variance so if you give it six samples or thr...
C: Aligning, Sorting and Converting to bam at the same command - possible? by jkbonfield • 250
If you think you'll be doing markdup at some point then you may also want to add a "samtools fixm...
C: Using dbSNP dataset by Amitm • 1.7k
Hi, You probably don't need to download dbSNP file yourself. Use a variant annotation program lik...
A: How to use SingleR for annotating single-cell transcriptomics dataset with our o by jared.andrews07 • 4.2k
Sure, you just have to feed it the counts (`ref` argument) and a vector of labels (`labels` argum...
C: How to detect novel proteins and non-annotated proteins from a list of MS protei by Asaf ♦ 6.7k
I don't have an answer but you might find one in this workshop's github: https://github.com/lgatt...

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