Showing:
joinx • reset5
votes
3
answers
1.4k
views
3
answers
written 3.3 years ago by
njbernstein • 40
• updated
3.3 years ago by
ernfrid • 190
Recent Votes
- What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2018?
- GenBank features don't extract sequences based on condition Biopython
- A: GenBank features don't extract sequences based on condition Biopython
- C: Alienness HGT results
- Total RNA-Seq vs mRNA-Seq
- A: Total RNA-Seq vs mRNA-Seq
- A: How can I parse a json file from MobiDB to retrieve proteome data?
Recent Locations •
All »
- United Kingdom, just now
- United States, 2 minutes ago
- Canada, 2 minutes ago
- St. Louis, MO, 3 minutes ago
Recent Awards • All »
- Scholar to jrj.healey ♦ 9.7k
- Commentator to genomax ♦ 60k
- Commentator to michael.ante • 2.9k
- Appreciated to jrj.healey ♦ 9.7k
- Teacher to WouterDeCoster ♦ 35k
- Scholar to WouterDeCoster ♦ 35k
Recent Replies
-
C: De-duplicate UMI at FASTQ level by
genomax ♦ 60k
You could think about extracting UMI's as a separate read. Dedupe them with `clumpify.sh` from BB...
-
C: Comparing Multiple Species RNA seq data by
genomax ♦ 60k
You could try what the authors of the paper above did: > To evaluate conservation of expressi...
-
C: De-duplicate UMI at FASTQ level by
Rituriya • 20
Great, looking forward to hear from him. Thank you for your input, genomax.
-
C: De-duplicate UMI at FASTQ level by
genomax ♦ 60k
Ah I see now. I thought `umi_tools` can dedupe based on just the UMI but looks like that is not t...
-
C: Comparing stranded reads to unstranded reads by
johnsonnathant • 40
Ideally, wouldn't mix the datasets, but everything would be done exactly the same. However, ther...
-
C: Combining two rnaseq platforms in one by
johnsonnathant • 40
It sounds like from the description, you have is Nanostring data, not RNA-Seq? Just to clarify, a...
-
C: Multiple sequence alignment tools for bigdata genomics ? by
jrj.healey ♦ 9.7k
As I mentioned in your other thread, I'm pretty confident that no such tools exist. At least, non...
-
C: output path issue on Busco (python) by
finswimmer ♦ 8.8k
> It would be odd if the config file is using ; in some way. The php config file `php.ini` fo...
-
C: GenBank features don't extract sequences based on condition Biopython by
jrj.healey ♦ 9.7k
Another small comment, I assume its elsewhere in your script, but you haven't declared the vector...
-
C: De-duplicate UMI at FASTQ level by
Rituriya • 20
Sorry. I always get confused with Add Reply/Add Comment. > I am not sure what you mean by th...
-
A: GenBank features don't extract sequences based on condition Biopython by
jrj.healey ♦ 9.7k
I'm not 100% sure if this code is right, but hopefully it gets you closer to the desired outcome....
-
C: Comparing Multiple Species RNA seq data by
Lmira zand • 0
I am confused to separate these species to groups or not because I don't know how to select these...
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1621 users visited in the last hour