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Installing Joinx on Linux-x86_64

cmake joinx install written 2.8 years ago by njbernstein • 30 • updated 2.8 years ago by ernfrid • 190

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Recent Replies

C: How to format nr database for blastp? by genomax ♦ 51k
Yep. That would be the easiest.
C: How to format nr database for blastp? by MAPK • 1.2k
Thanks.. should I just download nr.* then?
C: How to format nr database for blastp? by genomax ♦ 51k
Why did you not get the pre-made `nr` blast indexes from ftp://ftp.ncbi.nih.gov/blast/db/?
C: Heng Li: "I am likely to start my lab in October(..) I am looking for a couple o by jinals • 0
I totally agree with "against volunteering work unless benefits outweigh the considerable costs"....
C: randomreads.sh simulated reads dont map to genome by genomax ♦ 51k
Try `bbmap.sh` out. You would not regret it.
C: Anyone using Ubuntu on Windows (WSL)? by cpad0112 • 7.6k
subread is available in conda/bioconda channels
C: randomreads.sh simulated reads dont map to genome by grant.hovhannisyan • 900
indeed, but old friends and old wine are the best:)
C: randomreads.sh simulated reads dont map to genome by genomax ♦ 51k
Proof is in the pudding. Try it out yourself :-)
C: Picard SamToFastq error by genomax ♦ 51k
You could also use `reformat.sh in=your.sam out1=R1.fq.gz out2=R2.fq.gz` ([BBMap suite][1]) as an...
C: randomreads.sh simulated reads dont map to genome by grant.hovhannisyan • 900
Re multimappings, so I wouldn't have been surprised to see mulitmappers, but they constitute to j...
A: Picard SamToFastq error by Pierre Lindenbaum ♦ 110k
it's an I/O error. check you have the right to write in the current directory. check you have t...
C: randomreads.sh simulated reads dont map to genome by genomax ♦ 51k
All aligners have some fuzziness built into them. They all depend on an initial match that gets e...

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