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written 23 months ago by
njbernstein • 10
• updated
23 months ago by
ernfrid • 180
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Recent Replies
-
C: entrez utilities: snp by
deepak.k.choubey • 10
Ok, thanks for the explanation. For the SNPs in 3' and 5' UTRs and their positions, I have asked ...
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A: What Are The Most Common Stupid Mistakes In Bioinformatics? by
ATPoint • 1.1k
rm foo * instead of rm foo* and there goes all the content.
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C: Which of my mutations are SNPs? Is there an R package to annotate them? by
mforde84 • 880
So what type of files do you have? Or could you give a sample format of your data?
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C: Ensembl ID converter not working? by
ericbrenner • 0
The ID History Converter tool on Ensembl's webite: http://www.ensembl.org/Homo_sapiens/Tools/IDMa...
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A: How I get mRNA accession no if I have gene name and location with the help of pe by
Russ • 40
If I understand your question correctly, you should be able to use [BioMart][1] on Ensembl: 1....
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C: Ensembl ID converter not working? by
Jean-Karim Heriche ♦ 13k
This gene is indeed not in e90 but present in older versions. What ID conversion tool are you usi...
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A: separating bed file into separate files for every 100000 base pairs by
Kevin Blighe • 1.1k
This is my own example, which may or may not be of use to you: awk 'BEGIN {chr="chr1"; count...
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C: what do the headers of the rMATS output files mean? by
badribio • 200
Perfect explanation! cannot get more accurate..... it can get more confusing(but helpful) if you...
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A: Minor allele frequency calculation by
gpatil • 0
=(2*Ref_allele)/(2*(Ref_allele + alternate_allele)) e.g. Population size 108, reference allele “A...
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C: Converting narrowPeak to bed by
kennethcondon2007 • 820
the sample sheet is the more likely problem....the narrowPeak file doesnt need any editing.
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C: Bioinformatics "Cheat Sheet" by
Pierre Lindenbaum ♦ 98k
and some degenerate bases have been replaced by 'N' for chr3 and chrY. see: http://plindenbaum.bl...
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C: Error while installing RSeQC by
Jessica_bioinfo • 10
I am using ubuntu for installation of the software
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