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written 3.3 years ago by
njbernstein • 40
• updated
3.3 years ago by
ernfrid • 190
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Recent Replies
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A: Missing data in covariate file in PLINK by
karl.stamm ♦ 3.4k
PLINK v1.9 has a parameter --missing-phenotype which lets you assign a number other than -9 as th...
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C: TRUNCATED FILE CREATION when samtools is used to produce both_ends_unmapped.bam by
priya120195 • 0
I tried with all my samples, but still I am struggling with same issue. All the commands are runn...
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C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all() by
mk • 50
Ok, I threw up a link on Bioconductor forum. In case the answer gets posted there I'll update th...
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C: Shotgun metagenomics: Why bother with de novo assembly? by
BioinformaticsBro • 0
All valid points! I forgot about the extra resolution that can be gained from contigs vs. reads a...
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C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all() by
Kevin Blighe ♦ 35k
Yes, I was just about to say that I reproduced the error and that you should report on the Biocon...
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C: How can I extract the overlap of the sequence data by
190444373 • 0
thank you for your reply.
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A: GenomicDataCommons request timeouts cases() %>% ... %>% results_all() by
mk • 50
I have a fix for this but it's not very satisfactory. Based on Sean Davis' [blog post][1] I retr...
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C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all() by
mk • 50
Thanks @Kevin Blighe, sloppy cut/paste job I forgot to add the project to the filter() method. E...
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C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all() by
Kevin Blighe ♦ 35k
It runs here but there's no output (?): require(GenomicDataCommons) require(tibble) ...
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zhuchcn • 0
It’s very possible that is the case. It’ll be more helpful if you show the plot and maybe your code
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genomax ♦ 60k
To answer your question you can create a bed intervals file that contains information in this for...
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I went to Google and typed ‘bacteriophage genome annotation’. There are a lot of links there, so...
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