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1,000 results • Page
2 of 20
Sort: Views
Rank
Views
Votes
Replies
105
votes
31
replies
90k
views
18 follow
Best Way To Merge A Many Thousand Small Bam Files Into One Big Bam File?
bam
picard
samtools
merge
updated 17 months ago by
Ram
41k • written 12.4 years ago by
2184687-1231-83-
★ 5.1k
70
votes
16
replies
89k
views
12 follow
What Does Samtools Flagstat Results Mean?
rna
samtools
mouse
updated 20 months ago by
Pierre Lindenbaum
158k • written 12.2 years ago by
Sakti
▴ 510
80
votes
22
replies
88k
views
16 follow
How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Sequences In A Single File
next-gen
sequencing
fasta
rna
r
perl
updated 12 months ago by
Ram
41k • written 12.1 years ago by
Hamilton
▴ 290
56
votes
11
replies
88k
views
8 follow
merge large amount of fastq files into a single one
ChIP-Seq
fastq
updated 18 months ago by
Ram
41k • written 8.7 years ago by
catherine
▴ 250
43
votes
15
replies
87k
views
9 follow
How Do I Count The Number Values Less Than X In A Column Using R ?
rna
edger
r
counts
updated 9.0 years ago by
seidel
11k • written 12.7 years ago by
Jason
▴ 920
72
votes
20
replies
85k
views
15 follow
How To Get Ensembl Id (Gene, Transcript, Protein) Mapping Information?
ensembl
identifiers
mapping
updated 11 months ago by
Ram
41k • written 13.1 years ago by
Unode
▴ 180
108
votes
45
replies
84k
views
30 follow
How To Extract A Sequence From A Big (6Gb) Multifasta File ?
fasta
updated 15 months ago by
aswinssoman
▴ 50 • written 11.4 years ago by
Mchimich
▴ 320
60
votes
10
replies
84k
views
6 follow
Fold change - a final explanation
RNA-Seq
updated 3.3 years ago by
naloy
▴ 10 • written 5.2 years ago by
Sebastian Hesse
▴ 340
98
votes
27
replies
84k
views
21 follow
Extract Sub-Set Of Regions From Vcf File
vcf
tabix
genome
filter
updated 6 months ago by
NIRJHAR
• 0 • written 11.5 years ago by
Rubal7
▴ 830
88
votes
22
replies
84k
views
14 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
bcftools
samtools
htslib
updated 4 months ago by
sifa.khan
• 0 • written 5.4 years ago by
otwtgin2010
▴ 580
162
votes
64
replies
82k
views
39 follow
Selecting Random Pairs From Fastq?
random
fastq
illumina
sequence
updated 10 weeks ago by
rohitsatyam102
▴ 780 • written 12.7 years ago by
Ketil
4.1k
18
votes
14
replies
81k
views
10 follow
BLAST Database error: No alias or index file found for nucleotide database
blast
blastn
sift
makeblastdb
updated 8 weeks ago by
Ken
• 0 • written 9.1 years ago by
arronslacey
▴ 320
128
votes
24
replies
81k
views
18 follow
Sequence Length Distribution From A Fastq File
sequence
length
fastq
updated 4.6 years ago by
LuckyLuck
• 0 • written 10.5 years ago by
deepthithomaskannan
▴ 370
185
votes
43
replies
81k
views
29 follow
Drawing Chromosome Ideograms With Data
ideogram
visualization
chromosome
updated 27 days ago by
Ram
41k • written 13.7 years ago by
Yuri
★ 1.6k
137
votes
25
replies
81k
views
14 follow
Tutorial:
Piping With Samtools, Bwa And Bedtools
unix
samtools
bwa
bedtools
updated 20 months ago by
Ram
41k • written 11.6 years ago by
Ying W
★ 4.2k
51
votes
14
replies
79k
views
10 follow
Tutorial:
Using R in Conda
R
updated 8 months ago by
Ram
41k • written 3.4 years ago by
rohitsatyam102
▴ 780
120
votes
8
replies
79k
views
GRCh37/38(NCBI) vs hg19/hg38(UCSC)
ncbi
ucsc
grch38
hg38
updated 23 months ago by
Ram
41k • written 9.2 years ago by
pwg46
▴ 520
33
votes
4
replies
78k
views
7 follow
Merging Bam Files
picard
samtools
updated 4.5 years ago by
abhijit.synl
▴ 60 • written 11.9 years ago by
Tryingtogetthere
▴ 180
104
votes
12
replies
77k
views
7 follow
Bedtools Compare Multiple Bed Files?
bedtools
intersect
updated 13 months ago by
Ram
41k • written 12.1 years ago by
Bioscientist
★ 1.7k
99
votes
16
replies
76k
views
15 follow
How Much Coverage Do We Need For An Rna-Seq Experiment?
rna-seq
coverage
9.0 years ago by
Obi Griffith
20k
22
votes
2
replies
74k
views
How Can I Make A Bed File?
bed
updated 12.2 years ago by
John M
▴ 260 • written 12.2 years ago by
Omid
▴ 580
60
votes
15
replies
74k
views
9 follow
BAM/SAM to FASTA conversion
sam
bam
updated 20 months ago by
Ram
41k • written 8.8 years ago by
biolab
★ 1.4k
122
votes
17
replies
73k
views
8 follow
What Are Phased And Unphased Genotypes?
genotyping
genome
updated 21 months ago by
Ram
41k • written 12.6 years ago by
Nick
▴ 370
29
votes
10
replies
73k
views
9 follow
Tutorial:
Installing an updated R version (>=4.0) using conda
software-error
R
updated 9 months ago by
Ram
41k • written 2.7 years ago by
Nitin Narwade
★ 1.5k
20
votes
2
replies
73k
views
Subsetting in R based on row name?
R
updated 7.7 years ago by
Devon Ryan
104k • written 7.7 years ago by
hakimelakhrass
▴ 80
67
votes
18
replies
72k
views
17 follow
Project For A Beginner Bioinformatics Student
project
java
updated 17 months ago by
Ram
41k • written 12.1 years ago by
And
▴ 230
43
votes
25
replies
72k
views
10 follow
Will A Masters In Bioinformatics Help Me In Getting A Job?
career
education
updated 12.7 years ago by
Eric Fournier
★ 1.4k • written 12.7 years ago by
Bioinfo
▴ 50
188
votes
50
replies
71k
views
41 follow
How To Remove The Same Sequences In The Fasta Files?
fasta
sequence
duplicates
updated 14 months ago by
Ram
41k • written 13.1 years ago by
Zhangleisdau
▴ 340
51
votes
18
replies
71k
views
10 follow
Extract User Defined Region From An Fasta File
sequence
fasta
updated 6.4 years ago by
tuomastik
▴ 30 • written 12.4 years ago by
Palu
▴ 290
235
votes
45
replies
71k
views
34 follow
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen
sequencing
illumina
exome
human
updated 12.5 years ago by
User 9126
▴ 50 • written 13.5 years ago by
Biomed
4.9k
196
votes
44
replies
70k
views
33 follow
Tutorial:
Analysing Microarray Data In Bioconductor
microarray-analysis
bioconductor
updated 10 months ago by
Ram
41k • written 11.2 years ago by
Obi Griffith
20k
42
votes
14
replies
70k
views
9 follow
Synonymous And Non-Synonymous Snps
snp
updated 19 months ago by
Ram
41k • written 12.9 years ago by
Elena
▴ 250
33
votes
17
replies
70k
views
14 follow
How To Draw A Heat Map For Gene Expression Data?
microarray
heatmap
updated 10 months ago by
Ram
41k • written 12.5 years ago by
Fahmida
▴ 80
138
votes
21
replies
70k
views
18 follow
Database Of Tumor Suppressors And/Or Oncogenes
cancer
gene
database
oncogene
tumor
3.2 years ago by
Malachi Griffith
19k
19
votes
8
replies
69k
views
6 follow
Pheatmap Annotation
r
heatmap
updated 8.3 years ago by
wm
▴ 550 • written 10.7 years ago by
James
▴ 80
40
votes
15
replies
68k
views
14 follow
Converting Affymetrix Probes To Gene Ids
affymetrix
conversion
entrez
updated 14 months ago by
Ram
41k • written 10.4 years ago by
Josh
▴ 140
116
votes
25
replies
68k
views
14 follow
Is My Bam File Sorted ?
bam
next-gen
sequencing
sort
updated 10 months ago by
Miguel
▴ 20 • written 12.8 years ago by
Pierre Lindenbaum
158k
24
votes
23
replies
68k
views
7 follow
Multiple Histograms In One Plot
r
updated 24 months ago by
Ram
41k • written 10.5 years ago by
Assa Yeroslaviz
★ 1.8k
35
votes
9
replies
67k
views
8 follow
Minor allele frequency calculation
SNP
next-gen
updated 18 months ago by
Ram
41k • written 9.1 years ago by
Tark
▴ 50
1
vote
2
replies
67k
views
"SyntaxError: unexpected EOF while parsing " IN PYTHON 3.7
PYTHON
updated 2.7 years ago by
Istvan Albert
99k • written 3.6 years ago by
geethus2009
• 0
20
votes
15
replies
67k
views
12 follow
Python Script To Translate Rna Sequences To Protein Sequences
python
biopython
translation
updated 10.2 years ago by
viv_bio
▴ 50 • written 13.1 years ago by
Studentguy
▴ 70
56
votes
4
replies
67k
views
What is difference between soft-clipped and hard-clipped in SAM specification?
sequence
next-gen-sequencing
updated 13 months ago by
Ram
41k • written 9.1 years ago by
mangfu100
▴ 800
50
votes
17
replies
67k
views
11 follow
Extract fasta sequences from a file using a list in another file.
fasta
header
extract
awk
grep
updated 2.9 years ago by
Rashedul Islam
▴ 470 • written 5.5 years ago by
EBP91
▴ 50
51
votes
15
replies
66k
views
15 follow
Any Recommendations For Software For Drawing Plasmid Maps?
visualization
software
updated 19 months ago by
Ram
41k • written 12.5 years ago by
Michael Petronio
▴ 70
51
votes
15
replies
66k
views
12 follow
Sequence Number Count In Fastq.Gz File
counts
sequence
fastq
updated 9 months ago by
Ram
41k • written 12.4 years ago by
Bioscientist
★ 1.7k
75
votes
13
replies
66k
views
10 follow
Tutorial:
Machine Learning For Prediction of Relapse in Cancer - Part 2 - Building A Random Forest Classifier
r
cancer
classification
updated 13 months ago by
Ram
41k • written 10.0 years ago by
Nicholas Spies
★ 1.2k
363
votes
58
replies
66k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 6 weeks ago by
Ram
41k • written 13.8 years ago by
Istvan Albert
99k
93
votes
18
replies
66k
views
12 follow
Sequence length from Fasta
fasta
updated 11 months ago by
Ram
41k • written 9.1 years ago by
bongbang
▴ 80
11
votes
9
replies
65k
views
7 follow
combining fasta files
windows
fasta
notepad
updated 12 months ago by
Devarakonda
• 0 • written 8.9 years ago by
vigneshprbh37
▴ 30
9
votes
6
replies
65k
views
How To Calculate Coverage
fastq
coverage
updated 9.9 years ago by
r.follador
▴ 90 • written 9.9 years ago by
HG
★ 1.2k
1,000 results • Page
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Answer: Best way to normalize transcript reads data for PCA & correlation and further bi
Best way to normalize transcript reads data for PCA & correlation and further biostat analysis
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Scaling the data will give you Z-scores. This is a standard way of preparing data for PCA. I would also suggest trying a center-log-ratio…
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It worked! Thanks Matt!
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Comment: FastQC without yellow box
by
lobelino
• 0
Thank you for your answer.
Comment: FastQC without yellow box
by
lobelino
• 0
My question is Can I trust the statistics of my data I didn't get any yellow boxes, but I got high media values. Why I didn't get any yello…
Answer: FastQC without yellow box
by
ATpoint
78k
The box is the quartiles, the red line the median. Please google how to read a box plot. Your data is good in terms of base quality.
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What's your question?<a href="" title="Text added because biostars parser needs it"></a>
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Deprecated tools don't just stop producing output/errors, that's now how deprecation works.
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Wait, tinybio seems more self-aware than I thought: > **You**: Why did you give me results pertaining to sarek when I never mentioned that…
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