updated 11.0 years ago by
Aditya Joshi
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written 11.4 years ago by
Niek De Klein
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115
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18
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38k
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updated 5.9 years ago by
adavut
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written 11.7 years ago by
Nikolay Vyahhi
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115
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35
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36k
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updated 19 days ago by
e.r.zakiev
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30
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written 5.8 years ago by
ropolocan
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760
114
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26k
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updated 12.1 years ago by
Stan Letovsky
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140
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written 12.1 years ago by
Jeremy Leipzig
21k
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53
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4.9k
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updated 4.0 years ago by
Dawe
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270
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written 4.0 years ago by
pet.bioinformatician
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170
112
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24
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45k
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111
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25
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64k
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updated 7 weeks ago by
Miguel
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10
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written 12.2 years ago by
Pierre Lindenbaum
153k
110
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37
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6.9k
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updated 6 weeks ago by
Ram
38k
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written 11.5 years ago by
Pierre Lindenbaum
153k
109
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56
replies
40k
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23 follow
107
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27
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26k
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12 follow
updated 14 months ago by
Ram
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written 11.0 years ago by
Sukhi Singh
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106
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45
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80k
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updated 6 months ago by
aswinssoman
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20
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written 10.7 years ago by
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320
106
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23
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20k
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105
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72
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14k
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105
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27
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14k
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updated 22 months ago by
Maximilian Haeussler
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1.5k
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written 12.4 years ago by
Steve Moss
2.3k
105
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26
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38k
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23 follow
updated 6 months ago by
Ram
38k
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written 10.2 years ago by
henryvuong
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810
105
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21
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19k
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5.9 years ago by
Pierre Lindenbaum
153k
105
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46
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11k
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updated 29 days ago by
Ram
38k
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written 9.6 years ago by
ugly.betty77
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1.1k
103
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20
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28k
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updated 12.0 years ago by
Pablo Pareja
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written 12.0 years ago by
Andra Waagmeester
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12
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71k
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updated 5 months ago by
Ram
38k
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written 11.4 years ago by
Bioscientist
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1.7k
102
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19
replies
17k
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102
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44
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7.7k
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22 follow
102
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30
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59k
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updated 9 months ago by
Ram
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written 13.1 years ago by
Biostar User
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1.0k
101
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81
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24k
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100
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6
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22k
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updated 15 days ago by
Ram
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written 4.6 years ago by
finswimmer
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12
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36k
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100
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15
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97k
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updated 25 days ago by
Genetics
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written 10.8 years ago by
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36
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27k
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updated 7 days ago by
Simon
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written 9.4 years ago by
14134125465346445
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99
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8
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27k
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Tutorial:
Guide to TCGA data
99
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16
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75k
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8.3 years ago by
Obi Griffith
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99
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44
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21k
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99
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31
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81k
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99
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6
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55k
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17 months ago by
Nicolas Rosewick
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99
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16
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30k
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Tutorial:
Heatmaps in R
updated 15 days ago by
Ram
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written 6.6 years ago by
Jean-Karim Heriche
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24
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15k
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updated 14 months ago by
Ram
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written 8.5 years ago by
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310
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21
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98
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41
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Forum:
I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
updated 6.6 years ago by
Istvan Albert
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written 6.6 years ago by
moxu
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500
97
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9
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113k
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updated 11 months ago by
henry-keen
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40
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written 9.5 years ago by
newDNASeqer
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750
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47k
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97
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35
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updated 9.2 years ago by
vaibhav
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0
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written 12.8 years ago by
pixie@bioinfo
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97
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23
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32k
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97
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26
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updated 12.2 years ago by
Lars Juhl Jensen
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written 12.2 years ago by
toni
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2.2k
97
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19
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87k
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updated 7 months ago by
Ram
38k
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written 13.1 years ago by
Giovanni M Dall'Olio
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96
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31
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97k
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96
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26
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30k
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updated 9.4 years ago by
Biostar
20
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written 13.0 years ago by
Pierre Lindenbaum
153k
94
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25
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31k
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Tutorial:
Fastq Quality Control Shootout
94
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25
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74k
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94
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31
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37k
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93
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19
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56k
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updated 10 months ago by
Theo
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20
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written 12.6 years ago by
Niek De Klein
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2.6k
93
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21
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21k
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updated 8.4 years ago by
Biostar
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written 12.1 years ago by
Casey Bergman
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93
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50
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14k
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Forum:
Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
updated 28 days ago by
Ram
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written 9.3 years ago by
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Answer: Align miRNA library (small RNA-seq) without trimming
by
Ming Tommy Tang
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2.9k
bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
Comment: Differences in RNAseq Variant Calling and Allele Specific Expression
by
afei
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Hi!
I'm also confused by this. And the site (https://gatkforums.broadinstitute.org/gatk/categories/gatk-support-forum) is closed. Have you …
Comment: Variant caller reports a homozygous variant genotype, but more reads are associa
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rebeliscu
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Indeed, I thought the quality might be a factor. Still, given the information, it seems odd to me that that call was made.
Thanks for you…
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
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To generate a VCF file one would normally pipe the input of an `mpileup` command into an actual `call` command. For example:
```
bcftools …
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Your assumption is correct - AlphaFold pTM has nothing to do with post-translational modifications. See [**here**][1].
Not to discourage…
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I had this issue today and was able to resolve it by changing the random seed Admixture uses by adding `-s time` (which sets the random see…
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ahmad
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0
The following is the correct code
gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf')
dtgtf_43<-data.frame(gtf_4…
Comment: Total No of Genes of GENCODE Release 43
by
ahmad
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0
Hello,
thanks for replying, by mistake I paste the wrong code. the following is the corrected
gtf_43<-rtracklayer::import('gencode.v43…
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I have no idea what that is besides a bunch of jumbled sequences. You'll need look up the structure of the reads / library from wherever yo…
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There is some somatic SV study on these HCC1395: https://doi.org/10.1186/s13059-022-02816-6.
There is also a CNA preprint from years ago b…
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Just in case things are hard to find, for the WGS/WES, these are the data (what the file names mean: https://sites.google.com/view/seqc2/ho…
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Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"?
An alternative option is the following:
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idx <- whi…
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g:Profiler has an Arabidopsis option:
[g:Profiler][1]
[1]: https://biit.cs.ut.ee/gprofiler/gost
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The first job is a nightmare and you will need some luck. I understand you're looking for an industry offering. Unfortunately I've worked o…
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