11
votes
42
replies
3.4k
views
28
votes
42
replies
6.2k
views
7 follow
6.8 years ago by
mirza
▴
180
122
votes
42
replies
9.4k
views
21 follow
updated 7 months ago by
Ram
40k
•
written 10.8 years ago by
Istvan Albert
98k
8
votes
42
replies
4.1k
views
138
votes
42
replies
21k
views
22 follow
57
votes
42
replies
5.8k
views
12 follow
5
votes
41
replies
2.3k
views
3.4 years ago by
anasofiamoreira94
▴
80
19
votes
41
replies
8.0k
views
7 follow
updated 6.1 years ago by
ivivek_ngs
★
5.2k
•
written 6.1 years ago by
sophialovechan
▴
80
38
votes
41
replies
54k
views
9 follow
31
votes
41
replies
2.0k
views
12 follow
18
votes
41
replies
12k
views
6 follow
26
votes
41
replies
15k
views
10 follow
updated 10 months ago by
lovelymaoqin
•
0
•
written 5.7 years ago by
BrunoGiotti
▴
120
23
votes
41
replies
3.1k
views
6 follow
98
votes
41
replies
5.1k
views
17 follow
203
votes
41
replies
24k
views
20 follow
13
votes
41
replies
1.9k
views
updated 6 months ago by
Ram
40k
•
written 6.4 years ago by
micro32uvas
▴
10
16
votes
41
replies
8.4k
views
170
votes
41
replies
91k
views
27 follow
18
votes
40
replies
17k
views
16 follow
6
votes
40
replies
9.8k
views
10
votes
40
replies
5.6k
views
updated 6.1 years ago by
Gabriel R.
★
2.9k
•
written 6.1 years ago by
badribio
▴
280
68
votes
40
replies
5.4k
views
11 follow
updated 11.9 years ago by
pmenzel
▴
310
•
written 11.9 years ago by
Samuel Lampa
★
1.3k
40
votes
40
replies
10k
views
9 follow
updated 5.6 years ago by
Kevin Blighe
86k
•
written 7.0 years ago by
datascientist28
▴
550
67
votes
40
replies
8.7k
views
12 follow
updated 19 months ago by
Ram
40k
•
written 8.9 years ago by
Gabriel R.
★
2.9k
16
votes
40
replies
5.4k
views
updated 5.0 years ago by
Kevin Blighe
86k
•
written 5.0 years ago by
Eric Wang
▴
40
151
votes
39
replies
23k
views
20 follow
Forum:
A Farewell To Bioinformatics
updated 7 months ago by
Ram
40k
•
written 10.7 years ago by
Martin A Hansen
3.0k
20
votes
39
replies
8.6k
views
7 follow
226
votes
39
replies
284k
views
33 follow
25
votes
39
replies
5.0k
views
8 follow
Forum:
Bioinformatics Study Group
282
votes
39
replies
174k
views
29 follow
55
votes
39
replies
5.0k
views
8 follow
69
votes
39
replies
3.8k
views
14 follow
11
votes
39
replies
3.4k
views
66
votes
39
replies
6.9k
views
13 follow
updated 2.5 years ago by
Ram
40k
•
written 13.5 years ago by
Marcos De Carvalho
▴
310
81
votes
39
replies
6.6k
views
11 follow
updated 7 months ago by
Ram
40k
•
written 10.7 years ago by
Istvan Albert
98k
93
votes
39
replies
142k
views
19 follow
36
votes
39
replies
3.2k
views
11 follow
updated 4 months ago by
Ram
40k
•
written 5.9 years ago by
dhbradshaw
▴
130
18
votes
39
replies
3.3k
views
updated 4 months ago by
Ram
40k
•
written 4.5 years ago by
chernouhov sergey
▴
50
100
votes
38
replies
29k
views
34 follow
updated 27 days ago by
Jeremy Leipzig
21k
•
written 9.9 years ago by
14134125465346445
★
3.6k
129
votes
38
replies
6.7k
views
21 follow
updated 3 months ago by
Ram
40k
•
written 4.5 years ago by
Istvan Albert
98k
16
votes
38
replies
16k
views
229
votes
38
replies
140k
views
29 follow
updated 3 months ago by
Ram
40k
•
written 10.6 years ago by
Malachi Griffith
19k
48
votes
38
replies
16k
views
8 follow
updated 5 months ago by
Ram
40k
•
written 7.5 years ago by
Eric Normandeau
11k
39
votes
38
replies
7.7k
views
9 follow
27
votes
38
replies
19k
views
53
votes
38
replies
3.8k
views
10 follow
updated 4.0 years ago by
Istvan Albert
98k
•
written 4.0 years ago by
juanjo75es
▴
130
47
votes
37
replies
7.9k
views
12 follow
updated 7 months ago by
Ram
40k
•
written 10.1 years ago by
Niallhaslam
2.3k
29
votes
37
replies
2.9k
views
8 follow
4.9 years ago by
Shicheng Guo
★
9.3k
43
votes
37
replies
1.9k
views
7 follow
87
votes
37
replies
49k
views
20 follow
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
Canada, 1 minute ago
United States, 3 minutes ago
United States, 4 minutes ago
Bologna, 5 minutes ago
San Francisco, 6 minutes ago
India, 9 minutes ago
Recent Awards •
All
Popular Question to
emiliomastriani
▴
30
Popular Question to
Alewa
▴
130
Popular Question to
ahadli.farid
▴
50
Popular Question to
bioinfo
▴
110
Good Answer to
jared.andrews07
★
15k
Teacher to
Kevin Blighe
86k
Popular Question to
ManuelDB
▴
70
Recent Replies
Comment: Violin plot (Monocle 3) - Troubleshooting
by
seattlescientist_01
•
0
I see the error message but I'm confused on what it's telling me.
Answer: Bacterial Pangenome Analysis
by
liorglic
★
1.2k
I am not sure I understand why you think there is a problem with your analysis. It makes perfect sense that different blastp cutoffs produc…
Comment: How to plot proportion of cells in each cluster with scanpy?
by
bioinfo
▴
110
Thank you for replying again. The "type" still causes issues but the reply by Radu Tanasa worked.
Comment: How to plot proportion of cells in each cluster with scanpy?
by
bioinfo
▴
110
Thank you so much. That worked perfectly and it was much faster than what I was trying.
Answer: How to plot proportion of cells in each cluster with scanpy?
by
Radu Tanasa
▴
60
Hi. If I get this right, you simply need to compute the percentage of cells in each cluster at the dataset level?
```py
import pandas as p…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
Why would that be an advantage?
Comment: How to plot proportion of cells in each cluster with scanpy?
by
bk11
★
1.2k
The following code will write percentage in your stacked barplot.
cross_tab = pd.crosstab(adata.obs['leiden_0.6'],adata.obs['typ…
Comment: How to check RNAseq support for annotated genes?
by
BioinfoBee
•
0
@juke34 Thanks for the suggestion. I wonder if bedtool coverage or intersect can be used to check the transcript support or coverage for ea…
Comment: How to plot proportion of cells in each cluster with scanpy?
by
bioinfo
▴
110
Because that was the code from the link. It is how they specified they had 2 groups of samples but I don't have 2 groups. Sorry for the con…
Comment: Violin plot (Monocle 3) - Troubleshooting
by
bk11
★
1.2k
No there is no bug in this. Please see carefully what the `error` message tells to you.
Comment: How to check RNAseq support for annotated genes?
by
BioinfoBee
•
0
@michaeld Thanks. I tried it using STAR to map the transcript to the annotation gtf file, and was planning to use featureCounts/gene Counts…
Comment: How to plot proportion of cells in each cluster with scanpy?
by
bk11
★
1.2k
Why you had `type` in your code above then?
Comment: Comparing multiple columns from two files using AWK
by
Ram
40k
R's dplyr will serve well here.
```r
fileA %>% mutate(V3 = sub(V3, "chr","") %>% inner_join(fileB, join_by(V3 == chr, window_end <= V4, ..…
Comment: How to plot proportion of cells in each cluster with scanpy?
by
bioinfo
▴
110
Thank you for the suggestion. Unfortunately, that does not work for me because I do not have a "type" argument in the adata.obs.
I think th…
Comment: Violin plot (Monocle 3) - Troubleshooting
by
seattlescientist_01
•
0
I'm still seeing errors:
First I tried the code you mentioned except I use `clusters` instead of `embryo.time.bin` since this is a column…
Traffic: 2010 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6