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823 results • Page
2 of 17
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Votes
Replies
1
vote
1
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219
views
Bulk and Single Cell RNA-seq online course
single_cell_RNA-seq
bulk_RNA-seq
online_course
updated 3 days ago by
swbarnes2
13k • written 3 days ago by
ire
• 0
1
vote
1
reply
177
views
gene set enrichment analysis- by enrichGO
rna-seq
GO
enrichment
updated 3 days ago by
Istvan Albert
99k • written 3 days ago by
CL
• 0
0
votes
0
replies
121
views
how to download the VCF/MAF files from cBioportal genie site
cBioportal
mutation
VCF
TMB
3 days ago by
luckyday1661
• 0
0
votes
1
reply
161
views
How to get multiple protein domain database domain name from id's
annotations
blast2go
domain
domains
proteins
updated 2 days ago by
GenoMax
136k • written 3 days ago by
Nicolas
• 0
0
votes
0
replies
133
views
Extract upstream and downstream 50bp nontemplated sequences from a position
search
sequences
nontemplated
motif
2 days ago by
Ty
• 0
0
votes
1
reply
178
views
Annotate Unplaced Scaffold with Chromosome Information
assembly
annotation
scaffold
Chromosome
updated 2 days ago by
cmdcolin
★ 3.4k • written 3 days ago by
Trevor
• 0
0
votes
0
replies
121
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart
kegg
deseq2
3 days ago by
bioinfo
▴ 140
0
votes
1
reply
180
views
Where do these snpeff annotation come from?
snpeff
updated 3 days ago by
Istvan Albert
99k • written 3 days ago by
curious
▴ 730
4
votes
4
replies
301
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch
correction
2 days ago by
CTLong
▴ 20
4
votes
5
replies
892
views
Extracting only soft/hard clipped reads from a bam file
bam
reads
NGS
clipped
data_analysis
updated 3 days ago by
Pierre Lindenbaum
158k • written 14 months ago by
jcn
▴ 30
0
votes
3
replies
235
views
In what case there are RR reads but no LL reads when detect inversions using IGV?
IGV
inversion
updated 3 days ago by
Istvan Albert
99k • written 3 days ago by
Jingfang
• 0
3
votes
2
replies
502
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP
bbtools
updated 3 days ago by
harold.smith.tarheel
★ 4.9k • written 3 days ago by
Axzd
▴ 50
0
votes
1
reply
120
views
News:
Course: Genome Assembly and Annotation
GenomeAssembly
GenomeAnnotation
Longreads
Bioinformatics
Biodiversity
updated 3 days ago by
sil_bioinfo
▴ 30 • written 3 days ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
242
views
How I add new organism "Beauveria bassiana (strain ARSEF 2860)" in ClueGo plug-in of cytoscape?
cytoscape
updated 3 days ago by
Scooter
▴ 180 • written 28 days ago by
A
• 0
0
votes
1
reply
281
views
Gene Ontology enrichment with BINGO and ClueGO
BINGO
Cytoscape
ClueGO
Gene
Ontology
updated 3 days ago by
Scooter
▴ 180 • written 16 days ago by
David R
▴ 20
0
votes
1
reply
199
views
String App in Cytoscape
App
String
cytoscape
updated 3 days ago by
Scooter
▴ 180 • written 5 days ago by
hellokwmin
• 0
5
votes
8
replies
471
views
Tools or R / Python packages to perfom ML models
Python
machine-learning
R
transcriptomics
2 days ago by
sil_bioinfo
▴ 30
0
votes
1
reply
138
views
Salmon indices differences
salmon
RNAseq
index
refgenie
decoy
updated 3 days ago by
ATpoint
78k • written 3 days ago by
enee
▴ 10
3
votes
2
replies
283
views
Mapping quality in `vg giraffe`
vg
3 days ago by
Wenhai
• 0
0
votes
1
reply
146
views
PAML Troubleshooting Help
PAML
codeml
updated 3 days ago by
dthorbur
▴ 890 • written 3 days ago by
sebabiokr
▴ 10
0
votes
4
replies
230
views
Can you help me to download list of miRNA from a SRA under a bioproject ?
bioproject
mirna
updated 3 days ago by
Nitin Narwade
★ 1.5k • written 3 days ago by
abourrieau
• 0
0
votes
0
replies
97
views
how to calculate intramodular connectivity
WGCNA
intramodularConnectivity
3 days ago by
hellokwmin
• 0
2
votes
2
replies
207
views
R script in docker
R
Visual_studio_code
Docker
3 days ago by
mrashad
▴ 70
0
votes
0
replies
90
views
ADMIXTURE Freezes Right Before Completion
ADMIXTURE
admixture
3 days ago by
maxlaubstein
• 0
0
votes
3
replies
192
views
calculate nucleotide diversity from whole-genome-sequence data for individual genes
genomics
nucleotide_diversity
vcf
3 days ago by
J
• 0
0
votes
3
replies
219
views
ERROR FILE EXTENSION
Prokka
3 days ago by
syirah4
• 0
0
votes
1
reply
160
views
filtering SAM/BAM to remove hits spanning short combined alignment lengths and low counts
align
bbmap
metagenomics
updated 3 days ago by
Tao
▴ 30 • written 4 days ago by
Bryan
▴ 10
0
votes
9
replies
478
views
Where is the index command?
samtools
updated 3 days ago by
Michael
53k • written 4 days ago by
luque007
• 0
0
votes
0
replies
121
views
GATK Mutect2 mouse dbSNP vcf files recommendations for mouse whole exome data
mouse
GATK
Mutect2
dbSNP
3 days ago by
luckyday1661
• 0
0
votes
2
replies
244
views
Cellcyclescoring did not work in Seurat V5
singlecell
updated 3 days ago by
fracarb8
★ 1.3k • written 3 days ago by
synat.keam
▴ 80
0
votes
0
replies
108
views
CHIPSEQ Analysis , DiffBind Parameters
DiffBind
ChIP-seq
3 days ago by
DINESHR
• 0
3
votes
6
replies
431
views
scRNA-seq: Consistent low number of cells and low fraction reads across the samples
scRNA-seq
cells
mRNA
expression
gene
updated 2 days ago by
jv
★ 1.2k • written 4 days ago by
newbee
▴ 40
0
votes
0
replies
122
views
deeptools k-means clustering
heatmap
deeptools
chipseq
4 days ago by
biology_inform
▴ 50
0
votes
1
reply
158
views
How to check for incorporation of plasmid DNA into human genomic DNA (ChIP-seq)?
plasmid
chipseq
updated 3 days ago by
Nitin Narwade
★ 1.5k • written 4 days ago by
tss243
• 0
5
votes
6
replies
415
views
Generate Read counts from bam file
RNAseq
reference_genome
Deseq2
read_counts
updated 4 days ago by
NextGenSeek
• 0 • written 5 days ago by
singhankit973
• 0
1
vote
2
replies
210
views
What type of cancer did they study in this paper?
cancer
RNAseq
single-cell
updated 4 days ago by
GenoMax
136k • written 4 days ago by
JACKY
▴ 120
0
votes
0
replies
146
views
Job:
Bioinformatican/Data Scientist, Transplant Immunology/Genetics, Medical University of Vienna, Austria
RiskPrediction
NGS
SNP
ExomeSequencing
GeneticRiskScore
3 days ago by
aheinzel
▴ 130
6
votes
3
replies
240
views
How can I adjust Y-axis scale when making relative abundance box plot ?
statistics
box-plot
R
scale_adjustment
logarithm
updated 3 days ago by
Jeremy
▴ 850 • written 4 days ago by
ohtang7
▴ 40
0
votes
0
replies
101
views
Conumee output as input for Gistic2.0
cnv
copy
gistic
cna
conumee
updated 4 days ago by
GenoMax
136k • written 4 days ago by
sativus
▴ 10
0
votes
0
replies
110
views
Population study based on metaT and MetaG
metagenome
metatranscriptome
study
population
updated 4 days ago by
GenoMax
136k • written 4 days ago by
PierreGT
• 0
9
votes
7
replies
498
views
p-value combination methods
rnaseq
NB-GLM
p-value
meta-Analysis
updated 2 days ago by
Istvan Albert
99k • written 5 days ago by
sehriban.buyukkilic
• 0
0
votes
0
replies
105
views
sequencing deep mutational scanning library
mutagenesis
illumina
long-read
sequencing
4 days ago by
reaset41
• 0
0
votes
4
replies
240
views
Making multiple box plots with relative abundance in R
R
Boxplots
4 days ago by
ohtang7
▴ 40
1
vote
1
reply
152
views
Two identical reads in my bam files but with a different in CIGAR are mapped in a different location in IGV
pysam
4 days ago by
ManuelDB
▴ 80
0
votes
0
replies
87
views
GMT file from eggnog annotation
gmt
annotation
Eggnog
4 days ago by
jorge.cortes.miranda
• 0
4
votes
7
replies
290
views
regarding blast result interpretation
blast
updated 4 days ago by
dthorbur
▴ 890 • written 4 days ago by
Raman
• 0
2
votes
3
replies
215
views
Blastn DB issue
cgmlst
blastn
updated 3 days ago by
Philipp Bayer
8.1k • written 4 days ago by
hakhasan
• 0
1
vote
2
replies
202
views
How can I amend the output of a DIAMOND python script?
Python
Diamond
COG_analysis
3 days ago by
eamaunders
• 0
1
vote
2
replies
209
views
Problem in installing 'magick' R package
R
installation
package
magick
updated 4 days ago by
DBScan
▴ 210 • written 4 days ago by
applepie
• 0
0
votes
1
reply
347
views
FVA on Sybil
R
Sybil
metabolic
fba
fva
updated 4 days ago by
Thomas
• 0 • written 22 months ago by
isM15
• 0
823 results • Page
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NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
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