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Limit : this month
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1,000 results • Page
2 of 20
Sort: replies
Rank
Views
Votes
Replies
84
votes
22
replies
3.5k
views
12 follow
Forum:
is fortran still used in bioinformatics?
FORTRAN
R
updated 22 days ago by
Ram
38k • written 3.8 years ago by
Manoj
▴ 180
10
votes
22
replies
6.2k
views
12 follow
Easy way to split VCF file by chromosome
sequence
TOPMED
chromosome
Imputation
SNP
updated 9 days ago by
Ram
38k • written 14 months ago by
ConvolutedGenome
▴ 10
6
votes
22
replies
25k
views
12 follow
CluserProfiler message "No gene can be mapped"
R
updated 10 days ago by
joe555
• 0 • written 5.0 years ago by
ARich
▴ 130
18
votes
22
replies
7.1k
views
10 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 17 days ago by
Ram
38k • written 3.3 years ago by
Juke34
7.8k
20
votes
22
replies
12k
views
11 follow
Forum:
Nextseq for analysts
basespace
casava
bcl2fastq
nextseq
updated 25 days ago by
Ram
38k • written 8.8 years ago by
Madelaine Gogol
5.3k
75
votes
22
replies
49k
views
17 follow
How To Download All Sra Samples At Once ?
geo
sra
updated 8 days ago by
Ram
38k • written 9.1 years ago by
biorepine
★ 1.5k
20
votes
21
replies
2.3k
views
6 follow
Forum:
Next Gen seq for Job interview
next-gen
updated 15 days ago by
Ram
38k • written 8.1 years ago by
gauravsingh.singh86
▴ 20
81
votes
21
replies
4.1k
views
16 follow
Forum:
[UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 14 days ago by
Ram
38k • written 6.8 years ago by
Sinji
★ 3.2k
66
votes
21
replies
5.6k
views
18 follow
Forum:
Is there anyone who was a pure biologist?
next-gen
updated 25 days ago by
Ram
38k • written 8.9 years ago by
Chong Tang
▴ 100
42
votes
21
replies
14k
views
10 follow
Forum:
A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes
human
selection
updated 28 days ago by
Ram
38k • written 9.1 years ago by
Giovanni M Dall'Olio
27k
82
votes
21
replies
15k
views
16 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 22 days ago by
Ram
38k • written 2.5 years ago by
Hamid Ghaedi
2.9k
67
votes
21
replies
5.1k
views
8 follow
Forum:
Meta: Markdown in Biostars (now enabled)
meta
17 days ago by
Ram
38k
12
votes
20
replies
2.6k
views
Forum:
Starting a career in Bioinformatics
career
updated 10 days ago by
Ram
38k • written 6.8 years ago by
rupashree.choudhury
▴ 10
12
votes
20
replies
11k
views
10 follow
Tutorial:
Associating VDJ clonotyping data with scRNA-seq in Seurat
single-cell
RNA-Seq
seurat
TCR
updated 17 days ago by
Ram
38k • written 3.8 years ago by
jared.andrews07
★ 14k
50
votes
20
replies
4.9k
views
18 follow
Forum:
Explain bioinformatics to a 10 year old
bioinformatics
updated 22 days ago by
Ram
38k • written 7.1 years ago by
novice
★ 1.1k
6
votes
20
replies
2.6k
views
problem with vcf file
vcf
linux
SNP
updated 9 days ago by
Ram
38k • written 6.0 years ago by
ahmedaljumiliy
▴ 40
4
votes
20
replies
12k
views
Trouble indexing a .vcf.gz file
vcf
tabix
updated 14 days ago by
Ram
38k • written 5.3 years ago by
ricfoz
▴ 80
12
votes
20
replies
3.0k
views
7 follow
How to write out a ID and AA sequence from a SWISS PROT database file into a new file in a specific order using python?
protein
python
updated 9 days ago by
Ram
38k • written 15 months ago by
M.O.L.S
▴ 100
9
votes
20
replies
3.2k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 9 days ago by
Ram
38k • written 4.6 years ago by
marongiu.luigi
▴ 680
0
votes
20
replies
2.6k
views
Plink 2 user error converting .bgen to bcf
bcf
Plink
bgen2
updated 11 days ago by
Ram
38k • written 14 months ago by
Salahuddin
• 0
7
votes
20
replies
1.9k
views
NcbiblastpCommandline alignment results are different from blast webpage
alignment
biopython
blastp
updated 11 days ago by
Ram
38k • written 11 months ago by
laila.jafari
• 0
48
votes
19
replies
50k
views
11 follow
How Can I Convert Bam/Sam To Wiggle
wiggle
perl
samtools
updated 23 days ago by
Ram
38k • written 12.5 years ago by
Stew
★ 1.4k
42
votes
19
replies
5.9k
views
7 follow
Makefile-Driven Workflows And Bioconductor Objects
r
bioconductor
workflow
pipeline
updated 9 days ago by
Ram
38k • written 10.2 years ago by
gbayon
▴ 170
16
votes
19
replies
2.3k
views
7 follow
difficulty in underestanding terms and graphs
RNA-Seq
updated 10 days ago by
Ram
38k • written 6.8 years ago by
DavidP
▴ 60
8
votes
19
replies
12k
views
9 follow
Tutorial:
A:orthomcl with local mysql server on linux server, complete install
mysql
orthomcl
updated 22 days ago by
Ram
38k • written 8.4 years ago by
Lesley Sitter
▴ 580
5
votes
19
replies
7.5k
views
How to generate contigs from bam alignment
bam
Assembly
contigs
updated 14 days ago by
Ram
38k • written 7.6 years ago by
goubert.clement
▴ 10
27
votes
19
replies
3.8k
views
10 follow
Forum:
Google genomics cloud platform ?
genome
cloud
updated 10 days ago by
Ram
38k • written 7.8 years ago by
GouthamAtla
12k
0
votes
19
replies
2.5k
views
Convert Tblastn result in .txt to .fasta
fasta
Tblastn
Blast
updated 14 days ago by
Ram
38k • written 5.0 years ago by
jaqx008
▴ 110
10
votes
18
replies
14k
views
8 follow
Please help with removing spaces from fasta file
fasta
updated 9 days ago by
Ram
38k • written 7.3 years ago by
seta
★ 1.8k
4
votes
18
replies
2.8k
views
unimplemented type 'list' in 'EncodeElement' error in a Rscript run in Ubuntu terminal
Rscript
JUM
write.table
7 days ago by
farzaneafzali
▴ 70
7
votes
18
replies
17k
views
How to check if there is any extra space or blank line in the fasta file?
fasta
updated 9 days ago by
Ram
38k • written 7.3 years ago by
seta
★ 1.8k
66
votes
18
replies
46k
views
16 follow
Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
fastq
tools
updated 18 days ago by
Muhammad
• 0 • written 10.1 years ago by
14134125465346445
★ 3.6k
18
votes
18
replies
16k
views
How to download the complete database Nucleotide collection (nr/nt)?
blast
nr
nt
updated 7 days ago by
Ram
38k • written 3.7 years ago by
marongiu.luigi
▴ 680
16
votes
17
replies
3.4k
views
7 follow
Seeking practical advice for choosing an algorithm for performing GO enrichment.
microarray
enrichment
GO
updated 23 days ago by
Ram
38k • written 8.6 years ago by
Eric Fournier
★ 1.4k
9
votes
17
replies
2.3k
views
Forum:
“Systematic pattern of excess success"
paper
statistics
updated 18 days ago by
Ram
38k • written 8.3 years ago by
mikhail.shugay
3.5k
27
votes
17
replies
18k
views
10 follow
Cell Type Marker Databases?
database
updated 14 days ago by
e.r.zakiev
▴ 30 • written 10.9 years ago by
Adam Cornwell
▴ 510
5
votes
17
replies
15k
views
7 follow
how to fix the error - Too many open files - by changing code in python3.7
software error
updated 20 days ago by
wffphi
• 0 • written 3.9 years ago by
zhangdengwei
▴ 180
33
votes
17
replies
2.7k
views
7 follow
Forum:
What bioinformatics tools/software do not get enough recognition?
software
updated 22 days ago by
Ram
38k • written 8.4 years ago by
brentp
24k
11
votes
17
replies
1.2k
views
How to extract identical characters in multiple text files?
bash
updated 14 days ago by
Ram
38k • written 2.6 years ago by
A_heath
▴ 120
8
votes
17
replies
1.7k
views
how to identify CDR region in antibody sequence
CDR
antobidy
updated 16 days ago by
Jeremy
▴ 780 • written 9 months ago by
reany
▴ 50
1
vote
17
replies
2.3k
views
SNP filtering
vcf
SNP
updated 14 days ago by
Ram
38k • written 20 months ago by
rheab1230
▴ 140
4
votes
17
replies
2.4k
views
Selecting intergenic regions
grep
shell
updated 9 days ago by
Ram
38k • written 4.8 years ago by
vinayjrao
▴ 220
7
votes
17
replies
5.2k
views
Blast Result: Finding Non Overlapping Hits
python
updated 28 days ago by
Ram
38k • written 9.1 years ago by
User000
▴ 640
9
votes
17
replies
1.1k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell
smart-seq
updated 21 days ago by
dsull
★ 4.0k • written 4 weeks ago by
Assa Yeroslaviz
★ 1.8k
1
vote
17
replies
1.2k
views
Bowtie2 related questions
alignment
sequencing
assembly
updated 18 days ago by
Ram
38k • written 3.0 years ago by
hirakuda
• 0
1
vote
16
replies
4.3k
views
Bedtools intersect error
bedtools
vcf
variant-calling
GATK
bed
updated 14 days ago by
Ram
38k • written 5.0 years ago by
jaqx008
▴ 110
99
votes
16
replies
30k
views
18 follow
Tutorial:
Heatmaps in R
heatmap
R
updated 17 days ago by
Ram
38k • written 6.7 years ago by
Jean-Karim Heriche
26k
9
votes
16
replies
2.9k
views
6 follow
covert SAM to full length fasta
fasta
SAM
updated 9 days ago by
Ram
38k • written 4.6 years ago by
marongiu.luigi
▴ 680
10
votes
16
replies
9.8k
views
7 follow
ORF reading in Python
gene
sequence
updated 18 days ago by
ojaswinipandey
• 0 • written 3.8 years ago by
a.lathifbt
▴ 30
11
votes
16
replies
3.4k
views
6 follow
NCBI NR protein db nr.gz FASTA inflate error?
DIAMOND
NCBI
alignment
Megan6
updated 14 days ago by
Ram
38k • written 18 months ago by
nina.maryn
▴ 30
1,000 results • Page
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Recent Votes
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
Talk from Aaron Lun on Orchestrating Single-Cell Analysis With Bioconductor
SSPACE for scaffolding
Answer: Snakemake workflow for trimmomatic
Answer: How to remove duplicate reads after ONT basecalling from fastq.gz files
A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
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Comment: SKAT in R
by
Eliza
▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem
by
pinheirofabiano
▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Answer: Snakemake workflow for trimmomatic
by
antoine.fauchois92
• 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values
by
Eliza
▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
similar question [here][1], [here][2] and [here][3] [1]: https://support.bioconductor.org/p/54838/ [2]: https://support.bioconductor.…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
dare_devil
★ 1.7k
@genomax I have used the same platform file only. If you look at probe id and their corresponding `Gene Symbol` or `ENTREZ_GENE_ID` you can…
Comment: How to deal with the probe id mapping to multiple gene ids?
by
GenoMax
127k
Where are you seeing this? [Platform file for this array][1] on GEO has these names uniquely assigned. [1]: https://www.ncbi.nlm.nih.go…
Comment: My keys are all ENSEMBL, but R says they are not valid keys for ENSEMBL
by
rpolicastro
11k
`Org.Mm.eg.db` is the mouse organism database, but your ENSEMBL IDs are for human genes. Mouse ensembl ids start with `ENSMUSG`. You proba…
Comment: Snakemake doesn't recognize output files even though they are created
by
DdogBoss
• 0
Yes, it completed the dry run. What other information do you need?
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YL
▴ 10
Based on my personal thought, I think the se from LDSC output probably needs to be transferred using Delta method based on Fisher transform…
Comment: LDSC correlation calculate confidence intervals
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YL
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Hi, Are you able to find an answer for this? I have the exact question! YL
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by
ATpoint
71k
Use use ensembID_geneName as gene identifier to avoid that. These duplicate names exist as genes so removing them is somewhat not really da…
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by
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38k
> some Ensembl IDs that are the same Please show us some examples.
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rpolicastro
11k
What you're describing is a simulation of the hypergeometric test, so if you want an exact solution you could use the function `fora` from …
Comment: How to remove duplicate reads after ONT basecalling from fastq.gz files
by
Darrenjdd
• 0
Perfect! Thank you!
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