0
votes
8
replies
4.1k
views
2
votes
7
replies
4.0k
views
updated 23 hours ago by
Diana
•
0
•
written 7.1 years ago by
kirill1984
▴
10
3
votes
4
replies
4.0k
views
8
votes
7
replies
3.9k
views
2
votes
2
replies
3.6k
views
3
votes
11
replies
3.4k
views
6 follow
9
votes
8
replies
3.4k
views
updated 20 days ago by
DareDevil
★
3.3k
•
written 2.1 years ago by
from the mountains
▴
220
4
votes
12
replies
3.4k
views
6 follow
updated 9 days ago by
alejandrogzi
▴
30
•
written 3.4 years ago by
William
★
5.2k
11
votes
7
replies
3.4k
views
7 follow
5
votes
6
replies
3.3k
views
updated 28 days ago by
Ram
40k
•
written 7.9 years ago by
english.server
▴
290
7
votes
15
replies
3.3k
views
updated 2 days ago by
Gabriel R.
★
2.9k
•
written 3.3 years ago by
Rezenman
•
0
1
vote
6
replies
3.2k
views
7
votes
6
replies
3.2k
views
10
votes
18
replies
3.1k
views
0
votes
1
reply
2.9k
views
updated 22 days ago by
1601693223
•
0
•
written 7.8 years ago by
vicky
▴
30
8
votes
2
replies
2.9k
views
4
votes
4
replies
2.9k
views
60
votes
21
replies
2.8k
views
14 follow
0
votes
1
reply
2.8k
views
3
votes
1
reply
2.8k
views
updated 10 days ago by
Ram
40k
•
written 6.1 years ago by
Biowoogles
▴
20
2
votes
4
replies
2.8k
views
5
votes
4
replies
2.7k
views
5
votes
8
replies
2.7k
views
0
votes
7
replies
2.6k
views
2
votes
2
replies
2.6k
views
4
votes
6
replies
2.6k
views
0
votes
3
replies
2.6k
views
updated 28 days ago by
Ram
40k
•
written 6.8 years ago by
raya.girish
▴
30
2
votes
7
replies
2.6k
views
1
vote
1
reply
2.5k
views
updated 28 days ago by
Ram
40k
•
written 7.3 years ago by
nikelle.petrillo
▴
110
8
votes
7
replies
2.4k
views
6 follow
5
votes
2
replies
2.4k
views
updated 10 days ago by
Ram
40k
•
written 6.4 years ago by
kevin.o.oluoch
▴
70
1
vote
1
reply
2.4k
views
2
votes
6
replies
2.4k
views
8
votes
7
replies
2.3k
views
updated 10 days ago by
Ram
40k
•
written 6.1 years ago by
bruce.moran
▴
950
1
vote
1
reply
2.3k
views
updated 10 days ago by
Ram
40k
•
written 6.3 years ago by
Kevin Ernst
•
0
2
votes
1
reply
2.3k
views
4
votes
2
replies
2.3k
views
Tutorial:
Building mosdepth on macOS
0
votes
1
reply
2.3k
views
updated 27 days ago by
Ram
40k
•
written 21 months ago by
fifty_fifty
▴
60
3
votes
4
replies
2.2k
views
updated 28 days ago by
Ram
40k
•
written 3.5 years ago by
ovariohisterectomia
▴
40
1
vote
12
replies
2.2k
views
updated 7 days ago by
Ram
40k
•
written 10 months ago by
mohsamir2016
▴
30
0
votes
7
replies
2.1k
views
updated 29 days ago by
호성
•
0
•
written 2.1 years ago by
synat.keam
▴
80
3
votes
7
replies
2.1k
views
0
votes
3
replies
2.0k
views
updated 1 day ago by
aishwarya
•
0
•
written 5.2 years ago by
blooming.daisy333
▴
110
6
votes
4
replies
2.0k
views
5
votes
8
replies
2.0k
views
2
votes
7
replies
2.0k
views
updated 15 days ago by
karthivalarmathi99
▴
10
•
written 8 months ago by
Ryon
•
0
75
votes
18
replies
2.0k
views
11 follow
0
votes
2
replies
1.9k
views
updated 10 days ago by
Ram
40k
•
written 6.5 years ago by
akashmdr90
•
0
1
vote
4
replies
1.9k
views
updated 2 days ago by
Joel Wallenius
▴
180
•
written 2.6 years ago by
nkausthu
▴
30
Recent Votes
Recent Locations •
All
San Francisco, just now
Singapore, 4 minutes ago
India, 5 minutes ago
Norway, 7 minutes ago
Australia, 8 minutes ago
United States, 10 minutes ago
United States, 16 minutes ago
Recent Awards •
All
Popular Question to
jabaron.phd
•
0
Commentator to
ATpoint
76k
Popular Question to
Morgan S.
▴
80
Popular Question to
paria
▴
70
Recent Replies
Comment: Find potential important genes from bulk-RNA seq experiment
by
Michael
53k
You can use e.g. the WGCNA package for network analysis. In your case multiple samples this might mean multiple patients or a time series o…
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
by
edoardoscali.93
•
0
Thank you so much for your responses.
@genomax , I've downloaded both of the databases you recommended. I attempted to combine them into …
Answer: Simulate short-read RNA-seq data from long-read RNA-seq data
by
Mensur Dlakic
★
24k
I think you could try doing this, but it wouldn't be appropriate. You'd be bringing long-read errors, which I believe are higher than short…
Comment: Salmon index not progressing
by
camillab.
▴
130
I opened tow terminals and one was the code to build a decoy-aware transcriptome and the other was building indexes (no decoy)
Comment: Adding a control sample to bulk RNA-seq
by
Chris
▴
180
Thank you for the explanation! So just want to confirm one control with replicate is totally useless even can't use as a reference?
Answer: DESeq2 analysis using two featureCounts generated from different studies
by
swbarnes2
13k
Comparing samples between labs is a bad idea. Better to generate gene lists from one study from one lab, and gene lists from another study…
Comment: Adding a control sample to bulk RNA-seq
by
swbarnes2
13k
If a sample wasn't prepared along side your treated samples, it is a different batch. If you had treated and controls in each of two diffe…
Comment: kallisto normalized TPM values without bootstraps
by
ATpoint
76k
You don't need sleuth. Typically these deconvolutions, or most downstream analysis, is done on the gene- rather than the transcript-level w…
Comment: Salmon index not progressing
by
ATpoint
76k
If the top $CPU column shows some values in the hundreds then it is doing something (actually when it's > 0%). So based on the screenshot i…
Comment: Salmon index not progressing
by
camillab.
▴
130
Thank you. Waiting it's not gonna hurt me, when should I stop hoping and give up is the question? do you know is there a way if I can see i…
Comment: Filtering VCF to divide with equal sizes
by
Ram
40k
A more efficient way would be to make a 2 column CSV file, one column with the count value and the other with the chr:start-end range, then…
Answer: Filtering VCF to divide with equal sizes
by
avelarbio46
▴
30
I divided my contigs using R, but it was more complex than the program Pierre Lindenbaum made (https://jvarkit.readthedocs.io/en/latest/Vcf…
Comment: Salmon index not progressing
by
ATpoint
76k
Just wait until it is finished. It's seems to be running. I just checked my logs and on our HPC with four cores such as process for a decoy…
Comment: Salmon index not progressing
by
GenoMax
134k
> 2 hrs trying to generate decoy-aware transcriptome for human. is this time normal?
It is probably normal considering resources you have…
Comment: Chromosome bias on RNA-Seq differential gene expression analysis
by
grant.hovhannisyan
★
2.5k
you expect to have aneuploidy only in the knockout?
Traffic: 1819 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6