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1,000 results • Page
4 of 20
Sort: Views
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Views
Votes
Replies
8
votes
6
replies
2.5k
views
Batch effect removal with the help of sva
SVA
batch-effect
gene-expression
updated 16 days ago by
Ram
43k • written 3.5 years ago by
Gene_MMP8
▴ 240
1
vote
3
replies
2.4k
views
Problem to remove subset of patients with plink
plink
PED
updated 2 days ago by
chrchang523
10k • written 6.1 years ago by
Ginevra
▴ 10
0
votes
0
replies
2.4k
views
Filtering using TLOD score in MuTect2?
RNA-Seq
Somatic-Mutation
Variant-Calling
updated 29 days ago by
Ram
43k • written 6.2 years ago by
Sharon
▴ 600
12
votes
14
replies
2.4k
views
8 follow
Forum:
Recovering bam files after unknown deletion in the storage
photorec
bam
sequencing
written 4.9 years ago by
Gabriel Wajnberg
▴ 70
0
votes
1
reply
2.4k
views
Job:
Full Stack Web Developer - Cambridge, UK
JavaScript
Python
Visualisation
written 8.4 years ago by
Richard Smith
▴ 400
1
vote
4
replies
2.4k
views
Batch effect control in GWAS data.
Batch-effect
omniexpress
GWAS
GSA
updated 7 days ago by
Ram
43k • written 4.8 years ago by
saksis.rihards
▴ 10
3
votes
6
replies
2.4k
views
How to adjust by multiple variables using ComBat-Seq?
CombatSeq
combat
rna-seq
sva
batch-effect
updated 8 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
4
votes
7
replies
2.4k
views
Batch effects vs biological variables
Batch-effect
DESeq2
combat_seq
updated 16 days ago by
Ram
43k • written 3.7 years ago by
l.uva
▴ 20
1
vote
5
replies
2.3k
views
Shannon vs Simpson for TCR diversity estimation
TCR
shannon
simpson
updated 13 days ago by
ATpoint
82k • written 5.0 years ago by
CY
▴ 750
6
votes
10
replies
2.3k
views
Why different DEGs between my result and the author's result?
limma
microarray
differential-gene-expression
updated 15 days ago by
Ram
43k • written 6.1 years ago by
fernardo
▴ 170
2
votes
5
replies
2.3k
views
DGE on transcriptomic data, focus on transcript sequences or in derivated ORFs?
differential-gene-expression
RNA-Seq
ORFs
updated 15 days ago by
Ram
43k • written 6.4 years ago by
pablo61991
▴ 90
2
votes
1
reply
2.3k
views
TCGA RNAseqV2 data matrix batch effect control and remove
RNA-Seq
batch-effect
updated 6 days ago by
Ram
43k • written 7.6 years ago by
fractal61
▴ 10
0
votes
4
replies
2.3k
views
Remove Gaps from Multiple sequence alignment
python
MSA
updated 22 days ago by
Ram
43k • written 2.5 years ago by
ramsha
• 0
12
votes
4
replies
2.3k
views
long read + salmon? (transcript abundance)
long-read
salmon
updated 19 days ago by
Ram
43k • written 13 months ago by
shinyjj
▴ 50
5
votes
8
replies
2.3k
views
VariantCalling with single sanger read
snps
blast
indel
Variant-Calling
updated 29 days ago by
Ram
43k • written 7.7 years ago by
Amirosein
▴ 70
9
votes
5
replies
2.2k
views
Millions of Reads Needed for Differential Gene Expression
differential-gene-expression
RNA-Seq
deseq2
updated 15 days ago by
Ram
43k • written 4.6 years ago by
contact
▴ 20
2
votes
4
replies
2.2k
views
Negative values after batch correction using removeBatchEffect from Limma
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 8 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
1
vote
4
replies
2.2k
views
Remove batch effect for prediction of RNA-seq data
RNA-Seq
batch-effect
Random-Forest
updated 7 days ago by
Ram
43k • written 4.7 years ago by
Vlad
▴ 10
6
votes
4
replies
2.2k
views
Is there a way to get RNAFold output for multifasta in tabular format?
RNAFold
updated 7 days ago by
jakobjung
• 0 • written 4.6 years ago by
adhirajnath14
▴ 40
5
votes
4
replies
2.2k
views
How do we process Kallisto output (continuous real values) for DESEQ2 analysis (which strictly require discrete count values)?
read-counts
DESEQ2
differential-gene-expression
kallisto
updated 15 days ago by
Ram
43k • written 2.7 years ago by
mrj
▴ 170
4
votes
3
replies
2.2k
views
The result of differential gene expression analysis should be extracted based on adj.p.value ?
limma
microarray
bioconductor
R
updated 7 days ago by
Ram
43k • written 6.3 years ago by
Raheleh
▴ 260
2
votes
3
replies
2.2k
views
Platanus-allee phasing fail: Error(13): Error, SolveDBG exception!!
genome
next-gen
software-error
Assembly
updated 27 days ago by
Ram
43k • written 4.0 years ago by
memy
▴ 20
2
votes
5
replies
2.2k
views
Generating a heatmap in DEG analysis
Differential-gene-expression
RNA-Seq
updated 15 days ago by
Ram
43k • written 3.1 years ago by
Pranathi
▴ 10
3
votes
1
reply
2.2k
views
Maximum Number of Gene in a DESeq2 and edgeR
Differential-Gene-Expression
EdgeR
DESeq2
updated 15 days ago by
Ram
43k • written 8.1 years ago by
rieza.aprianto
▴ 10
2
votes
2
replies
2.1k
views
How to use pacbio reads to join contigs
assembly
tgs
pacbio
updated 19 days ago by
Ram
43k • written 6.0 years ago by
934963534
▴ 20
2
votes
1
reply
2.1k
views
How to make batch univariate cox analysis for list
univariate-cox-analysis
updated 6 days ago by
Ram
43k • written 4.8 years ago by
BioLite
▴ 20
5
votes
5
replies
2.1k
views
batch effect in RNAseq analysis using tophat cufflinks pipeline
RNA-Seq
tophat
batch-effect
cufflinks
updated 7 days ago by
Ram
43k • written 5.3 years ago by
yff
• 0
1
vote
0
replies
2.1k
views
Tool:
DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
RNA-Seq
scRNA-Seq
R
Batch-Effect
updated 6 days ago by
Ram
43k • written 6.9 years ago by
Ar
★ 1.1k
1
vote
2
replies
2.1k
views
RNA-seq unbalanced batch effect correction
RNA-Seq
edgeR
R
Batch-Effect
updated 7 days ago by
Ram
43k • written 5.6 years ago by
sckinta
▴ 730
2
votes
3
replies
2.1k
views
Why the PCA results of PCASamples() from methylkit is different from prcomp()?
methylkit
prcomp
pca
PCASamples
multiplePCA
updated 18 days ago by
1769mkc
★ 1.2k • written 4.2 years ago by
maria2019
▴ 250
3
votes
2
replies
2.1k
views
Batch effect correction - miRNA sequencing - DESeq2
Batch-effect
DESeq2
miRNA-Seq
updated 7 days ago by
Ram
43k • written 5.5 years ago by
prekrish
• 0
6
votes
8
replies
2.1k
views
Simple explanation and usage of WGCNA package?
wgcna
RNA-Seq
ChIP-Seq
updated 16 days ago by
mflab
• 0 • written 3.9 years ago by
m.sadman.sakib
▴ 120
0
votes
0
replies
2.1k
views
betweenLaneNormalization and calcNormFactors in RUVs
Differential-Gene-Expression
RUVs
RNA-Seq
R
updated 15 days ago by
Ram
43k • written 6.8 years ago by
manish20072013
▴ 10
3
votes
5
replies
2.1k
views
DE analysis with edgeR and possibly batch effect
analysis
edgeR
batch-effect
DE
updated 7 days ago by
Ram
43k • written 5.1 years ago by
seta
★ 1.9k
7
votes
4
replies
2.1k
views
filtering genes by pearson correlation
correlation
RNA-Seq
R
updated 7 days ago by
Ram
43k • written 6.1 years ago by
mannoulag1
▴ 120
1
vote
6
replies
2.1k
views
DGE on protein-coding and lncRNAs separately?
differential-gene-expression
RNA-seq
updated 15 days ago by
Ram
43k • written 6.5 years ago by
firestar
★ 1.6k
0
votes
5
replies
2.0k
views
Batch effect correction & normalization after training/test split for gene expression data
RNA-seq
batch-effect
normalization
updated 8 days ago by
Ram
43k • written 20 months ago by
mmitra
▴ 60
1
vote
3
replies
2.0k
views
gene expression data analysis and batch effect methods
microarray
Gene-expression
batch-effect
updated 6 days ago by
Ram
43k • written 6.9 years ago by
Shamim Sarhadi
▴ 220
0
votes
0
replies
2.0k
views
NOISeq Batch Correction to RNA-seq data
Batch-effect
RNA-Seq
ARSyNseq
limma
NOISeq
updated 6 days ago by
Ram
43k • written 6.9 years ago by
endikavarela
• 0
4
votes
6
replies
2.0k
views
RNA-Seq DGE: Evaluate model quality
differential-gene-expression
RNA-Seq
deseq2
updated 15 days ago by
Ram
43k • written 6.2 years ago by
firestar
★ 1.6k
0
votes
1
reply
2.0k
views
Is it appropriate to apply RUVseq on output from kallisto?
RNA-Seq
batch-correction
kallisto
updated 8 days ago by
Ram
43k • written 5.3 years ago by
unawaz
▴ 60
0
votes
0
replies
2.0k
views
Job:
Bioinformatics Research Postdoc
RNA-Seq
genome
updated 13 days ago by
Ram
43k • written 8.2 years ago by
ggrant543
• 0
0
votes
4
replies
2.0k
views
Requesting help with RNA-Seq differential gene analysis
differential-gene-expression
deseq2
updated 15 days ago by
Ram
43k • written 6.2 years ago by
sagnik
▴ 50
0
votes
0
replies
1.9k
views
Correcting batch effect from known variables in RnBeads using Combat
Combat
450k
methylation
RnBeads
batch-effect
updated 6 days ago by
Ram
43k • written 7.1 years ago by
rahel14350
▴ 40
0
votes
0
replies
1.9k
views
batch effect in radseq
radseq
batch-effect
SNP
updated 6 days ago by
Ram
43k • written 7.5 years ago by
oselm
▴ 50
9
votes
4
replies
1.9k
views
Integration of RNA-Seq data with microarray data
microarray
RNA-Seq
batch-effect
R
updated 8 days ago by
Ram
43k • written 4.0 years ago by
Fahimeh.6868
▴ 30
2
votes
5
replies
1.9k
views
Differential Expression Analysis with batches which have different biological groups
R
RNA-Seq
limma
DE
batch-effect
updated 7 days ago by
Ram
43k • written 4.8 years ago by
asalimih
▴ 60
6
votes
10
replies
1.9k
views
A guide to modern genome assembly
long-reads
illumina
genome-assembly
updated 19 days ago by
Ram
43k • written 2.6 years ago by
predeus
★ 1.9k
4
votes
5
replies
1.9k
views
which package should be selected for differential gene expression analysis
Differential-gene-expression
RNA-Seq
updated 15 days ago by
Ram
43k • written 5.5 years ago by
lkianmehr
▴ 100
1
vote
2
replies
1.9k
views
Remove batch effect from exome data
NGS
exome-sequencing
batch-effect
updated 6 days ago by
Ram
43k • written 6.5 years ago by
Alternative
▴ 270
1,000 results • Page
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