362
votes
82
replies
143k
views
35 follow
164
votes
70
replies
60k
views
34 follow
105
votes
15
replies
112k
views
16 follow
updated 29 days ago by
xiaoleiusc
▴
140
•
written 11.9 years ago by
GouthamAtla
12k
103
votes
42
replies
31k
views
34 follow
updated 10 days ago by
Jeremy Leipzig
22k
•
written 10.4 years ago by
14134125465346445
★
3.6k
98
votes
106
replies
46k
views
26 follow
updated 11 days ago by
psb7
▴
20
•
written 5.6 years ago by
Kevin Blighe
87k
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 1 day ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
81
votes
27
replies
20k
views
12 follow
57
votes
22
replies
28k
views
7 follow
updated 13 days ago by
Ram
43k
•
written 4.5 years ago by
Arindam Ghosh
▴
510
54
votes
12
replies
28k
views
12 follow
updated 1 day ago by
kjngo
•
0
•
written 12.0 years ago by
Gabriel R.
★
2.9k
49
votes
30
replies
11k
views
13 follow
updated 22 days ago by
Istvan Albert
100k
•
written 8.1 years ago by
Ram
43k
39
votes
9
replies
42k
views
6 follow
updated 2 days ago by
Ram
43k
•
written 6.7 years ago by
lessismore
★
1.3k
37
votes
5
replies
13k
views
updated 9 days ago by
inedraylig
▴
60
•
written 2.9 years ago by
Pratik
★
1.0k
34
votes
16
replies
20k
views
9 follow
updated 10 hours ago by
Hagen
▴
10
•
written 10.2 years ago by
filipzembol
▴
180
31
votes
14
replies
12k
views
11 follow
30
votes
12
replies
3.8k
views
26
votes
5
replies
23k
views
23
votes
23
replies
9.8k
views
6 follow
updated 2 days ago by
Ram
43k
•
written 5.3 years ago by
iraia.munoa
▴
130
23
votes
11
replies
4.8k
views
7 follow
updated 3 days ago by
Ram
43k
•
written 4.9 years ago by
WouterDeCoster
47k
22
votes
18
replies
6.1k
views
22
votes
14
replies
28k
views
7 follow
21
votes
6
replies
16k
views
18
votes
20
replies
4.4k
views
6 follow
updated 10 days ago by
Ram
43k
•
written 7.5 years ago by
morteza.mahmoudisaber
▴
80
17
votes
8
replies
12k
views
9 follow
updated 16 days ago by
AshleeThomson
▴
70
•
written 6.1 years ago by
lauren.wahyudi
▴
50
17
votes
16
replies
14k
views
10 follow
16
votes
10
replies
1.0k
views
6 follow
updated 21 days ago by
Madelaine Gogol
5.3k
•
written 22 days ago by
Ann
★
2.4k
15
votes
10
replies
7.6k
views
6 follow
updated 22 days ago by
Alex Reynolds
35k
•
written 8.3 years ago by
int11ap1
▴
470
15
votes
6
replies
666
views
15
votes
6
replies
1.2k
views
6 follow
updated 4 days ago by
Pierre Lindenbaum
161k
•
written 19 months ago by
wormball
▴
10
13
votes
13
replies
18k
views
9 follow
updated 11 days ago by
ummeswaiba
•
0
•
written 10.3 years ago by
biostar
▴
170
13
votes
22
replies
11k
views
updated 2 days ago by
Ram
43k
•
written 6.8 years ago by
lessismore
★
1.3k
13
votes
10
replies
6.4k
views
12
votes
7
replies
6.9k
views
12
votes
2
replies
423
views
12
votes
17
replies
6.0k
views
9 follow
12
votes
14
replies
2.4k
views
8 follow
written 4.9 years ago by
Gabriel Wajnberg
▴
70
12
votes
4
replies
2.2k
views
12
votes
13
replies
4.4k
views
11
votes
9
replies
11k
views
10 follow
11
votes
8
replies
5.1k
views
11
votes
22
replies
4.1k
views
11
votes
7
replies
991
views
updated 26 days ago by
Gordon Smyth
★
7.0k
•
written 11 weeks ago by
arvind.1
▴
10
11
votes
6
replies
501
views
11
votes
12
replies
757
views
11
votes
9
replies
6.9k
views
11
votes
11
replies
1.1k
views
7 follow
updated 10 days ago by
GenoMax
141k
•
written 13 days ago by
alejandro.mejiam1
▴
10
10
votes
7
replies
7.1k
views
6 follow
updated 3 days ago by
george-hall-ucl
•
0
•
written 9.2 years ago by
win
▴
970
10
votes
37
replies
12k
views
21 follow
updated 9 days ago by
aziz.hammou
•
0
•
written 8.8 years ago by
kevluv93
▴
170
10
votes
36
replies
5.8k
views
updated 2 days ago by
Ram
43k
•
written 5.7 years ago by
Kristin Muench
▴
620
10
votes
5
replies
1.4k
views
6 follow
updated 17 days ago by
Ram
43k
•
written 2.5 years ago by
margot.27.muller
▴
30
10
votes
6
replies
14k
views
7 follow
updated 1 day ago by
colindaven
6.3k
•
written 10.9 years ago by
Ontheway
▴
10
Recent Votes
Recent Locations •
All
United States, just now
Stony Brook University, NY, just now
United States, 1 minute ago
Iran, 4 minutes ago
Palau, 4 minutes ago
United States, 5 minutes ago
United Kingdom, 6 minutes ago
Recent Awards •
All
Popular Question to
Rodolfo Adrián
•
0
Scholar to
damian.szk
▴
70
Popular Question to
alphaflylizard
•
0
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
DanielEB_fisk
▴
20
Scholar to
Pierre Lindenbaum
161k
Recent Replies
Comment: Duplicate marking, read names, and the SRA
by
Luka
•
0
>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required)
The -F option (or any equ…
Answer: Duplicate marking, read names, and the SRA
by
GenoMax
141k
To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
Ram
43k
To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
by
BioinfGuru
★
1.7k
Done. Thank you.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
GenoMax
141k
Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
BioinfGuru
★
1.7k
Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
Comment: Downloading the raw microarray data from GEO
by
GenoMax
141k
No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
Comment: Cellranger count error: Input FASTQ file ended prematurely
by
GenoMax
141k
That is odd. Thanks for following-up and providing an explanation.
Answer: Cellranger count error: Input FASTQ file ended prematurely
by
bp22
▴
70
Dear all,
The reason for the error was due to the index (I1) fastq files, for example `SI-GA-A1_1_S1_L001_I1_001.fastq.gz` having a lo…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor
by
Ram
43k
Your tutorial required `sudo` and thus is not doable for a majority of people. Any alternative to `sudo snap`?
Comment: Should I apply doublet detection for each pool seperately?
by
Ram
43k
Do not delete posts that have received feedback,
Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
by
_quantum_girl_
▴
10
They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
Comment: RNA seq differential expression analysis
by
BioinfGuru
★
1.7k
https://help.galaxyproject.org/
Answer: RNA seq differential expression analysis
by
Mohamed Abderrahmane
▴
10
The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
Comment: Illumina reads preprocessing best practice for snp calling applications
by
Enrique
•
0
Hi! I'm still interested in the step that you use for the SNP calling. Did you use `trimmomatic` or another tool for trimming before mappin…
Traffic: 2552 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6