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1,000 results • Page 4 of 20
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11
votes
8
replies
1.5k
views
Tools for CRISPR/CAS9
CRISPR-CAS9
updated 14 days ago by 39k • written 20 months ago by ▴ 10
11
votes
2
replies
7.4k
views
Tutorial: Plotting the coverage and depth (Y-axis) statistics of a bam file along the genome (X-axis), using Samtools, awk and R.
genome plot coverage samtools
updated 22 days ago by 39k • written 6.2 years ago by ★ 1.5k
11
votes
13
replies
934
views
Pan genome based assembly
denovo ngs
15 days ago by bioinfo223 ▴ 10
11
votes
5
replies
1.2k
views
Forum: What bioinformatic training?
training RNA-Seq illumina
updated 2 days ago by 39k • written 4.0 years ago by ▴ 150
11
votes
7
replies
13k
views
Tutorial: Removing rows with duplicate values based on 1 or more key values - linux awk
awk linux bash
updated 17 days ago by 39k • written 5.7 years ago by 85k
11
votes
5
replies
5.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 9 days ago by 39k • written 4.8 years ago by ★ 9.3k
11
votes
8
replies
1.2k
views
Forum: Bioinformatics cores pricing model
pricing-models core Bioinformatics-services
updated 3 days ago by 39k • written 4.2 years ago by ▴ 160
11
votes
6
replies
2.8k
views
Alphabetizing fasta sequence
fasta
updated 21 days ago by 39k • written 6.0 years ago by ▴ 40
11
votes
6
replies
1.3k
views
Forum: Posting a preprint paper on biostars.com
preprint
updated 8 days ago by 39k • written 4.6 years ago by ▴ 720
11
votes
7
replies
5.1k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 15 hours ago by 39k • written 3.8 years ago by ▴ 270
11
votes
13
replies
3.4k
views
6 follow
Forum: NGS Data storage solutions for small organisations or big labs
big-data HTS storage NGS metagenomics
updated 2 days ago by 39k • written 4.0 years ago by ▴ 830
11
votes
9
replies
1.9k
views
Forum: Survey: help define Gencode and NCBI primary transcripts
refseq ensembl gencode ncbi transcript
updated 11 days ago by 39k • written 5.1 years ago by 23k
11
votes
8
replies
2.4k
views
Job: Heng Li: "I am likely to start my lab in October(..) I am looking for a couple of postdocs in bioinformatics, genomics and related fields"
postdoc
updated 9 days ago by 39k • written 4.9 years ago by 154k
11
votes
8
replies
465
views
7 follow
BioInformatics, Software
Learning Software
updated 1 day ago by ▴ 100 • written 2 days ago by ▴ 20
11
votes
4
replies
303
views
how to sort a fasta file
fasta
updated 1 day ago by 154k • written 2 days ago by ▴ 20
11
votes
8
replies
1.6k
views
6 follow
Question to wet lab life scientists and clinicians: is additional bioinformatics support from a freelancer an option?
freelance
updated 10 days ago by 39k • written 5.0 years ago by • 0
11
votes
5
replies
1.1k
views
How does a bioinformatician employ Python in data analysis?
Python
updated 16 days ago by 39k • written 5.6 years ago by ★ 4.2k
11
votes
11
replies
1.3k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 8 days ago by 39k • written 4.5 years ago by ★ 2.3k
11
votes
7
replies
7.3k
views
Tutorial: ClusterProfiler A software for functional enrichment of differentially expressed genes- A tutorial
clusterProfiler Software rna-seq
updated 14 days ago by 39k • written 2.2 years ago by ▴ 300
11
votes
5
replies
4.2k
views
Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 2 days ago by 39k • written 4.0 years ago by ▴ 90
11
votes
9
replies
2.0k
views
7 follow
Forum: Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error pca scRNA-seq
updated 14 days ago by 39k • written 3.4 years ago by 72k
10
votes
8
replies
8.3k
views
9 follow
Genome assembly statistical tools
statistics tools Assembly
updated 1 day ago by • 0 • written 3.8 years ago by ▴ 10
10
votes
4
replies
5.3k
views
Forum: Bioinformatics: Which language should I learn
programming
updated 3 days ago by 39k • written 4.1 years ago by • 0
10
votes
8
replies
8.3k
views
7 follow
Building Dict File for GATK
java gatk
updated 2 days ago by ★ 3.1k • written 3.4 years ago by ▴ 360
10
votes
7
replies
1.4k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 2 days ago by 39k • written 3.9 years ago by ▴ 330
10
votes
8
replies
13k
views
6 follow
Error: Eof Marker Is Absent When Processing A Bam File
samtools
updated 22 days ago by 39k • written 10.8 years ago by ▴ 50
10
votes
0
replies
1.9k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer mutations TCGA RNA-seq cancer-driver
updated 15 days ago by 39k • written 5.4 years ago by ▴ 850
10
votes
4
replies
1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 7 days ago by 39k • written 4.4 years ago by 9.9k
10
votes
6
replies
2.2k
views
Job: Bioidea - open on taking on jobs
genome sequence next-gen-sequencing gene
updated 21 days ago by 39k • written 6.0 years ago by ▴ 850
10
votes
10
replies
1.5k
views
Forum: Doctor looking fertility for a collaborator for text mining on pubmed
text-mining fertility pubmed
updated 16 days ago by 39k • written 5.5 years ago by • 0
10
votes
8
replies
1.2k
views
PHRED scores and sequence errors
sequencing-errors probability PHRED
updated 21 days ago by 39k • written 23 months ago by ★ 2.3k
10
votes
6
replies
1.7k
views
Forum: How to acknowledge in the paper a reference genome that hasn't been published yet?
reference paper
updated 9 days ago by 39k • written 4.8 years ago by ▴ 140
10
votes
15
replies
1.0k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 1 day ago by 21k • written 3 months ago by ★ 1.5k
10
votes
9
replies
729
views
6 follow
Sorting (big) FASTQ file
sort FASTQ
updated 29 days ago by 72k • written 5 weeks ago by ▴ 80
10
votes
2
replies
3.4k
views
Tutorial: Graph visualization with igraph in R
Visualization igraph Graph R Network
updated 22 days ago by 39k • written 6.1 years ago by 26k
10
votes
11
replies
3.7k
views
7 follow
Forum: What made you interested in Bioinformatics?
career
updated 16 days ago by 39k • written 5.5 years ago by ▴ 970
10
votes
4
replies
2.8k
views
Tutorial: CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation corlevelplot
updated 14 days ago by 39k • written 5.3 years ago by 85k
10
votes
1
reply
7.7k
views
Tutorial: How to select reads with specific flag using samtools
next-gen-sequencing
updated 17 days ago by 39k • written 5.7 years ago by ▴ 110
10
votes
7
replies
2.6k
views
Forum: Cancer research for computer science student
cancer research computer-science
updated 16 days ago by 39k • written 5.6 years ago by ▴ 70
9
votes
15
replies
11k
views
10 follow
Error In Bedtools Getfasta: Chromosome Not Found
bedtools
updated 21 days ago by 39k • written 10.3 years ago by ▴ 10
9
votes
9
replies
6.9k
views
News: NovaSeq quality analysis
sequencing
updated 21 days ago by 39k • written 5.9 years ago by 18k
9
votes
6
replies
1.2k
views
Forum: New Aligner Tool - Would you be interested in this ?
ChIP-Seq alignment Assembly next-gen rna-seq
updated 11 days ago by 39k • written 5.2 years ago by ▴ 30
9
votes
8
replies
2.6k
views
How to extract a sequence from a multi-fasta file based on its position?
fasta perl python shell-script
updated 2 days ago by 39k • written 4.0 years ago by ▴ 100
9
votes
10
replies
1.4k
views
Forum: Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences data-analysis
updated 11 days ago by 39k • written 5.2 years ago by ★ 1.3k
9
votes
5
replies
2.0k
views
Tutorial: What is new in samtools release 1.5 [Solstice Release] (21st June 2017)
samtools
updated 18 days ago by 39k • written 5.9 years ago by 98k
9
votes
5
replies
3.3k
views
News: SAMTOOLS 1.4 released
samtools
updated 23 days ago by 39k • written 6.2 years ago by 154k
9
votes
3
replies
4.5k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 15 hours ago by 39k • written 3.7 years ago by ▴ 830
9
votes
14
replies
8.1k
views
how to extract the genomic positions and chromosome number for a list of genes
genome Ensembl Biomart
updated 7 days ago by 39k • written 4.3 years ago by ▴ 60
9
votes
11
replies
2.6k
views
7 follow
Forum: Fields with biggest demand for bioinformatics?
career
updated 7 days ago by 39k • written 4.4 years ago by ▴ 200
9
votes
3
replies
2.9k
views
Forum: Why doesn't Swift have an active bioinformatics community project like rust-bio, Biogo and BioJulia?
Swift
updated 15 days ago by 39k • written 5.4 years ago by • 0
1,000 results • Page 4 of 20
Recent Votes
Comment: Low mapping percentage
Comment: Low mapping percentage
A: genomicranges outside sequence bounds
A: how can i download human ribosomal reference ?
Bayesian network for biological data using bnlearn
Comment: What does canonical transcript mean in the context of VEP
Answer: What does canonical transcript mean in the context of VEP
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Recent Replies
Comment: Low mapping percentage by Sib ▴ 40
Thank you for the reply. If there is not much I can do about the contamination at this stage, what is the benefit of knowing the source of…
Answer: integrate single cell RNA sequencing data by Hamid Ghaedi 2.9k
There are different approaches that you may choose to deal with batch correction. Harmony is one of those approaches that has been shown to…
Comment: What does canonical transcript mean in the context of VEP by Vincent Laufer ★ 2.9k
@curious - The only thing I have to add to @yokofakun 's precise answer is that, while you are considering and reading about Ensembl canoni…
Comment: Help with running ATAC using Encode pipeline by Chris ▴ 100
Thank you for the instruction! I see the beside json file we also have input file which I am confused. Because we have already defined the …
Comment: Comparing loci across catalogs by rycro_c • 0
Hi @Austin, Did you ever figure this out?
Comment: Low mapping percentage by Dave Carlson ★ 1.3k
I've been faced with similar issues in the past. Both option 1 and 2 seem useful. You can also treat your data as accidental metagenomic …
Comment: How to sort gff3 according to chromosome order? by Pierre Lindenbaum 154k
-s, --stable stabilize sort by disabling last-resort comparison
Comment: Low mapping percentage by GenoMax 129k
If you do have contamination (either from rRNA of same species or from true contaminant(s)) there is not much you can do about that at this…
Comment: Optimum setting for local blastp for ~10K sequences by GenoMax 129k
> Running the same sequence on the blast web server took 10 seconds Don't try to compare anything local with NCBI's web blast infrastruct…
Comment: how to Construct a Newick tree file from five large fasta files by Joe 21k
Yes, I know - but that doesn't answer the question. **What *kind* of phylogenetic tree?**
Comment: Optimum setting for local blastp for ~10K sequences by sodiumnitrate ▴ 20
Thank you for the explanation! I managed to get diamond to work, but I'm having trouble getting it to run faster than blast. For a single t…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig by GenoMax 129k
That is the question @Vincent answer poses since it seems to correspond to something different. You can also create an issue on https://gi…
Answer: How to sort gff3 according to chromosome order? by GenoMax 129k
Please use `AGAT`: https://agat.readthedocs.io/en/latest/topological-sorting-of-gff-features.html
Comment: convert data frame with character column to data frame with integer column by atemedorri137798 • 0
dear @Basti : As you said in order to clarify my issue I edit question box with give an example. I will be grateful if you take a look at …
Comment: How to sort gff3 according to chromosome order? by Ram 39k
Those are your options with the `sort` utility - you can either keep the existing order or re-order by coordinate. If you're looking for a …
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