7
votes
5
replies
310
views
7
votes
13
replies
3.5k
views
6 follow
6
votes
3
replies
3.8k
views
6
votes
6
replies
414
views
6 follow
updated 6 days ago by
Antonio R. Franco
★
5.1k
•
written 7 days ago by
ritafonsa
•
0
6
votes
5
replies
3.0k
views
updated 4 days ago by
colindaven
5.7k
•
written 8.2 years ago by
ChillarAnand
▴
70
6
votes
1
reply
267
views
6
votes
2
replies
2.7k
views
updated 21 days ago by
Ram
41k
•
written 13.7 years ago by
2184687-1231-83-
★
5.1k
6
votes
7
replies
1.9k
views
updated 29 days ago by
Wayne
★
1.8k
•
written 10 months ago by
Hansen_869
▴
60
6
votes
12
replies
907
views
updated 19 days ago by
Brian Bushnell
19k
•
written 6 weeks ago by
analyst
▴
10
6
votes
6
replies
395
views
6 follow
6
votes
3
replies
4.2k
views
updated 15 days ago by
Ram
41k
•
written 13.6 years ago by
Allpowerde
★
1.3k
6
votes
4
replies
1.3k
views
updated 16 days ago by
Gordon Smyth
★
6.5k
•
written 18 months ago by
saipra003
▴
10
6
votes
7
replies
5.1k
views
updated 21 days ago by
Ram
41k
•
written 13.7 years ago by
Fred Fleche
4.3k
6
votes
7
replies
8.0k
views
6 follow
6
votes
2
replies
351
views
6
votes
3
replies
3.3k
views
6
votes
3
replies
254
views
1 day ago by
blackadder
▴
30
5
votes
6
replies
2.8k
views
5
votes
2
replies
235
views
4 days ago by
Rafael Soler
★
1.2k
5
votes
5
replies
328
views
5
votes
3
replies
321
views
5
votes
7
replies
555
views
5
votes
4
replies
316
views
updated 7 days ago by
Istvan Albert
99k
•
written 8 days ago by
German.M.Demidov
★
2.9k
5
votes
8
replies
629
views
updated 15 days ago by
Maximilian Haeussler
★
1.6k
•
written 21 days ago by
San
▴
10
5
votes
8
replies
602
views
18 days ago by
happyday1661
•
0
5
votes
5
replies
379
views
6 follow
updated 20 days ago by
Jeremy Leipzig
22k
•
written 20 days ago by
smurph50
▴
50
5
votes
13
replies
858
views
5
votes
5
replies
2.2k
views
5
votes
11
replies
617
views
updated 25 days ago by
rpolicastro
12k
•
written 25 days ago by
Francois Piumi
▴
40
5
votes
5
replies
6.1k
views
6 follow
updated 5 days ago by
Prakki Rama
★
2.7k
•
written 4.9 years ago by
dalhoomist
▴
40
5
votes
8
replies
3.6k
views
updated 14 days ago by
ashaneev07
▴
20
•
written 20 months ago by
ashwing.kofficial
▴
10
5
votes
4
replies
447
views
5
votes
10
replies
598
views
5
votes
2
replies
1.8k
views
5
votes
6
replies
3.8k
views
5
votes
3
replies
199
views
updated 10 hours ago by
Brian Bushnell
19k
•
written 1 day ago by
jiyoung
▴
20
5
votes
4
replies
348
views
updated 21 days ago by
Ram
41k
•
written 21 days ago by
Begonia_pavonina
▴
120
5
votes
1
reply
237
views
updated 26 days ago by
Pierre Lindenbaum
158k
•
written 26 days ago by
captainlabman
▴
10
5
votes
0
replies
4.2k
views
5
votes
3
replies
230
views
4
votes
4
replies
459
views
14 days ago by
fitwae
•
0
4
votes
2
replies
388
views
4
votes
6
replies
372
views
4
votes
4
replies
344
views
4
votes
4
replies
372
views
updated 27 days ago by
Brian Bushnell
19k
•
written 28 days ago by
Jimmy
▴
10
4
votes
8
replies
1.6k
views
updated 15 days ago by
Istvan Albert
99k
•
written 21 months ago by
Federico
•
0
4
votes
4
replies
558
views
4
votes
3
replies
7.1k
views
updated 25 days ago by
xiaoleiusc
▴
120
•
written 8.0 years ago by
QVINTVS_FABIVS_MAXIMVS
★
2.5k
4
votes
9
replies
29k
views
8 follow
updated 15 days ago by
GenoMax
136k
•
written 10.0 years ago by
chrismas05
•
0
4
votes
6
replies
520
views
3 days ago by
DonPhager
•
0
Recent Votes
Recent Locations •
All
United States, 1 minute ago
China, 1 minute ago
United States, 4 minutes ago
Canada, 5 minutes ago
India, 11 minutes ago
United States, 14 minutes ago
Hong Kong, 16 minutes ago
Recent Awards •
All
Popular Question to
applepie
•
0
Popular Question to
saipra003
▴
10
Popular Question to
O.rka
▴
710
Popular Question to
Daniel
▴
30
Popular Question to
prasundutta87
▴
660
Popular Question to
RNAseqer
▴
250
Scholar to
Devon Ryan
104k
Recent Replies
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴
10
That makes sense. Thanks for the reminder.
Comment: bwa mem hangs after a few thousand reads
by
GenoMax
136k
Then you probably are best served by talking with your local sys admins to see where the issue may be.
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
> even if tpe and tbo are trailing after adapter and quality trimming
Priority/order of operations in coded in the program. Brian will be …
Comment: bwa mem hangs after a few thousand reads
by
cee28
•
0
Actually, I originally did both of those things that you suggested. My original command at the top of the post was submitted to our cluster…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴
10
The number of bases is still different even if `tpe` and `tbo` are trailing after adapter and quality trimming. So far for the RNA-seq proj…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
GenoMax
136k
No there should not be much impact unless one of the reads has become substantially short compared to its mate. Strictly speaking you don't…
Comment: bwa mem hangs after a few thousand reads
by
GenoMax
136k
> I am running this on a HPC cluster.
This is a guess but if you are actually running this on a cluster then it is possible that you need …
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
by
CTLong
▴
10
Thanks GenoMax for the reply. That being said, does this difference in total bases between read1 and read2 have an effect in subsequent rea…
Comment: CHIPSEQ : Cut AND Run , DiffBind Parameters
by
DINESHR
•
0
Here are my PCA results plotted through Diffbind and Correlation heat map by deeptools shows some clustering in the samples @atpoint
version 2.3.6
version 2.3.6