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831 results • Page
1 of 17
Sort: Views
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Views
Votes
Replies
362
votes
82
replies
143k
views
35 follow
Tool:
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
parallel
next-gen
ngs
updated 2 days ago by
jena
▴ 290 • written 11.1 years ago by
ole.tange
★ 4.4k
105
votes
15
replies
111k
views
16 follow
Convertion Of Gff3 To Gtf
gtf
gff
updated 7 days ago by
xiaoleiusc
▴ 140 • written 11.8 years ago by
GouthamAtla
12k
185
votes
44
replies
83k
views
30 follow
Drawing Chromosome Ideograms With Data
ideogram
visualization
chromosome
updated 8 days ago by
Michael
54k • written 14.0 years ago by
Yuri
★ 1.7k
164
votes
70
replies
60k
views
34 follow
How To Efficiently Parse A Huge Fastq File?
fastq
next-gen-sequencing
updated 3 hours ago by
Ram
43k • written 12.7 years ago by
Panos
★ 1.8k
66
votes
23
replies
48k
views
8 follow
extract dendrogram cluster from pheatmap
R
updated 11 days ago by
Getnet Tesfaw
• 0 • written 6.3 years ago by
1769mkc
★ 1.2k
78
votes
38
replies
32k
views
15 follow
Illumina Instrument Type from fastq?
fastq
updated 27 days ago by
nickp60
▴ 60 • written 7.8 years ago by
andrew.j.skelton73
6.5k
103
votes
42
replies
30k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 20 days ago by
Jeremy Leipzig
22k • written 10.4 years ago by
14134125465346445
★ 3.6k
41
votes
13
replies
25k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq
DESeq2
geneontology
GSEA
updated 20 days ago by
CTLong
▴ 90 • written 6.4 years ago by
Sreeraj Thamban
▴ 290
26
votes
5
replies
23k
views
BLAST options: max_target_seqs and num_alignments
blast
updated 7 days ago by
Lada
▴ 30 • written 9.4 years ago by
biolab
★ 1.4k
34
votes
16
replies
20k
views
14 follow
Tutorial:
TCGA UUIDS to TCGA barcode (SampleID) in R
next-gen
GDC
R
TCGA
updated 9 days ago by
aUser
▴ 30 • written 7.5 years ago by
martinguerrerog89
▴ 310
5
votes
7
replies
19k
views
6 follow
VCF To FASTA
next-gen
genetic
genome
updated 19 days ago by
seta
★ 1.9k • written 5.2 years ago by
Myo Naung
▴ 10
21
votes
6
replies
16k
views
survfit(Surv()) P-value interpretation for 3 survival curves?
survfit
Surv
survival curves
R
updated 4 days ago by
marshelma
• 0 • written 4.5 years ago by
JJDollar
▴ 130
47
votes
15
replies
16k
views
10 follow
DESeq2 compare all levels
differential-gene-expression
RNA-Seq
DESeq2
updated 9 days ago by
Bionaught
• 0 • written 5.7 years ago by
firestar
★ 1.6k
15
votes
34
replies
16k
views
10 follow
Issues installing bcl2fastq?
bcl2fastq
demultiplexing
updated 21 days ago by
barslmn
★ 2.1k • written 6.6 years ago by
a.rex
▴ 350
70
votes
29
replies
15k
views
13 follow
Tutorial:
Generating consensus sequence from bam file
fasta
consensus
bam
updated 14 days ago by
jkbonfield
★ 1.2k • written 5.1 years ago by
finswimmer
16k
46
votes
13
replies
14k
views
13 follow
Tutorial:
Methylation Analysis Tutorial in R - Part 1
R
cancer
methylation
updated 16 days ago by
Konstantinos
• 0 • written 3.5 years ago by
Hamid Ghaedi
3.2k
12
votes
19
replies
14k
views
11 follow
SnpMatrix from VCF file
VCF
Eqtl
MatrixEQTL
SnpMatrix
vcftools
updated 13 days ago by
pmiller
▴ 10 • written 7.0 years ago by
Dhana
▴ 110
8
votes
12
replies
13k
views
11 follow
ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
featureCounts
updated 25 days ago by
BioinfGuru
★ 1.6k • written 4.0 years ago by
chatterjee.arumoy
▴ 50
16
votes
7
replies
12k
views
8 follow
MAF vs VAF
sequencing
updated 3 days ago by
Ömer An
▴ 260 • written 6.0 years ago by
lauren.wahyudi
▴ 50
0
votes
3
replies
12k
views
Converting PDBQT output to PDB in VINA
Docking
PDBQT
VINA
updated 21 days ago by
Ricard
• 0 • written 8.3 years ago by
marawanhussain
▴ 30
31
votes
14
replies
12k
views
11 follow
Finding Rrna Genes In Metagenomic Data
rna
rRNA
metagenomics
updated 2 days ago by
Ram
43k • written 13.5 years ago by
toshnam
▴ 650
14
votes
9
replies
11k
views
8 follow
Downsample BAM file to specific amount of reads
bam
updated 13 days ago by
GenoMax
140k • written 2.6 years ago by
kstangline
▴ 80
49
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 7 hours ago by
Istvan Albert
100k • written 8.1 years ago by
Ram
43k
16
votes
10
replies
10k
views
8 follow
GRCh37.p13 download at NCBI FTP?
ncbi
reference
grch37
updated 18 days ago by
Sruthi
• 0 • written 5.5 years ago by
Marvin
▴ 220
21
votes
26
replies
9.4k
views
11 follow
Tutorial:
Create de novo repeat library
de-novo
repeat
annotation
updated 14 days ago by
Yao
▴ 30 • written 4.3 years ago by
Juke34
8.5k
82
votes
46
replies
8.3k
views
15 follow
Tool:
ChatGPT optimized for bioinformatics questions
gpt
updated 14 days ago by
LauferVA
4.1k • written 9 months ago by
Sasha
▴ 830
25
votes
15
replies
7.6k
views
9 follow
Randomize Read Order In Multigbp Fastq File?
fastq
updated 16 days ago by
Cliff
• 0 • written 12.8 years ago by
2184687-1231-83-
★ 5.1k
15
votes
10
replies
7.5k
views
6 follow
Intersect multiple BED files
bed
intersect
updated 1 day ago by
Alex Reynolds
35k • written 8.2 years ago by
int11ap1
▴ 470
8
votes
7
replies
6.8k
views
Parse the Xml response from Entrez Db=bioproject Using Biopython eFetch
entrez
efetch
biopython
xml
updated 7 days ago by
LauferVA
4.1k • written 8.8 years ago by
Prasad
▴ 50
12
votes
7
replies
6.7k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 3 days ago by
dsull
★ 5.7k • written 2.6 years ago by
hamarillo
▴ 70
3
votes
8
replies
6.2k
views
6 follow
Download CAZy database
genome
gene
database
cazy
updated 13 days ago by
GenoMax
140k • written 6.1 years ago by
anu014
▴ 190
9
votes
8
replies
5.6k
views
7 follow
CONTRA for CNV detection. troubleshooting
genome
next-gen-sequencing
cnv
software-error
updated 3 hours ago by
Ram
43k • written 9.8 years ago by
Kizuna
▴ 870
6
votes
12
replies
5.5k
views
6 follow
Getting sample information from GEO
GEO
NCBI
updated 1 day ago by
Tania
• 0 • written 6.9 years ago by
Tom_L
▴ 350
7
votes
15
replies
5.5k
views
9 follow
convert VCF to gVCF
gVCF
VCF
updated 20 days ago by
jena
▴ 290 • written 4.5 years ago by
mateid
• 0
5
votes
5
replies
5.4k
views
beagle 4 exception: Duplicate marker
vcf
IBD
plink
beagle
updated 2 days ago by
Ram
43k • written 9.3 years ago by
galbarel
▴ 10
8
votes
16
replies
5.2k
views
9 follow
visualize CNV data based on WGS
CNV
updated 7 days ago by
clealk
▴ 50 • written 6.2 years ago by
Bogdan
★ 1.4k
18
votes
10
replies
5.2k
views
Should I normalize read counts if I want to run plotPCA?
RNA-Seq
updated 20 days ago by
ella
• 0 • written 3.9 years ago by
c_u
▴ 520
12
votes
19
replies
5.2k
views
how to identify CDR region in antibody sequence
CDR
antibody
updated 27 days ago by
tiancheng
• 0 • written 21 months ago by
reany
▴ 50
11
votes
8
replies
5.0k
views
Multi-mapping High with featureCounts but not STAR
RNA-Seq
sequencing
alignment
updated 7 days ago by
GenoMax
140k • written 4.8 years ago by
garbuzov
▴ 70
17
votes
8
replies
5.0k
views
Mean Variance Relationship single cell RNA-Seq Data
RNA-Seq
variance
deseq2
single cell
updated 16 days ago by
thomas.heigl.ibk
• 0 • written 3.3 years ago by
kw486
▴ 30
5
votes
15
replies
4.7k
views
6 follow
Why are there many reads with green color in IGV of RNA-seq data?
rna-seq
IGV
mapping
updated 6 days ago by
vague-barracuda-4686
• 0 • written 4.7 years ago by
Apprentice
▴ 160
4
votes
14
replies
4.5k
views
8 follow
Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
Tax4Fun2
updated 1 day ago by
Ram
43k • written 21 months ago by
Elsa
▴ 20
9
votes
1
reply
4.4k
views
How To Generate Synthetic Read Data From An Existing Fasta
fasta
sequence
reads
updated 23 days ago by
Ram
43k • written 10.2 years ago by
smith.tracymae
• 0
9
votes
6
replies
4.4k
views
6 follow
Remove contigs that are lower than 200
assembly
sequencing
genome
next-gen
updated 20 days ago by
GenoMax
140k • written 4.1 years ago by
Bioinfo
▴ 20
2
votes
2
replies
4.3k
views
Variant calling for sanger reads
variant-calling
sanger
alignment
variants
updated 2 days ago by
Ram
43k • written 7.6 years ago by
Amirosein
▴ 70
3
votes
12
replies
4.2k
views
samtools mpileup keeps making an empty file
samtools
pileup
updated 28 days ago by
gabt
▴ 120 • written 5.2 years ago by
James Reeve
▴ 130
10
votes
6
replies
4.0k
views
Tutorial:
CorLevelPlot - Visualise correlation results, e.g., clinical parameter correlations
correlation
corlevelplot
updated 1 day ago by
Ram
43k • written 6.1 years ago by
Kevin Blighe
87k
4
votes
14
replies
4.0k
views
Trouble with bedtools getfasta
bedtools
getfasta
written 2.1 years ago by
gkunz
▴ 30
5
votes
9
replies
3.7k
views
Can one plot % of variance using the plotMDS function?
limma
plotMDS
PCA
PCoA
% of varience
updated 26 days ago by
Gordon Smyth
★ 6.9k • written 3.8 years ago by
harelarik
▴ 90
2
votes
4
replies
3.6k
views
Tutorial for analysing gpr files of microarray
GPR
microarray
updated 6 days ago by
bioyas
▴ 10 • written 5.4 years ago by
afli
▴ 190
831 results • Page
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Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
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Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
Some things never change ... the most common mistake is still the one on top there
Comment: Low number of both surviving reads after trimming
by
Ram
43k
I see that the code content was not added again, just the formatting modified. The output is still mangled. Compare it to the output you se…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Mensur Dlakic
★ 26k
I was trying to avoid re-living traumatic events, but here goes. This is an attempt to delete all the files with a certain extension but in…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thank you for your response. There was no particular reason of `LEADING:20 and TRAILING:20`, but I used the same parameters as I had used …
Comment: Low number of both surviving reads after trimming
by
GenoMax
140k
A significant fraction of your reads appear to have the nextera sequence, that combined to this directive `LEADING:20` (do you have a reaso…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Here is my fastqc, especially adapter content graph, before trimming(R1 and R2): ![enter image description here][1] And this after trimm…
Comment: Low number of both surviving reads after trimming
by
Jay
• 0
Thanks, I modified.
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Pierre Lindenbaum
160k
11 years ago: https://www.biostars.org/p/7126/
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
haha yes exactly! After the first or second ruined fasta, I started "catting" all fasta files and piping to other commands, just to reduce …
Comment: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Istvan Albert
100k
... ha, beat me to it, posted at the same time ... this error rules them all .. here is a cool trick on how to count fasta headers in file…
Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
by
Dave Carlson
★ 1.7k
I've definitely ruined some genome fasta files by running `grep ^> mygenome.fasta` instead of `grep "^>" mygenome.fasta`
Comment: Error in CIBERSORTx
by
o.nad
• 0
Hello. I faced the same problem but not able to resolve it. I don't have double quotation and no NA values and the dataset used is in the f…
Answer: Annotation of Complex genomes using NCBI Genome Workbench
by
Lissa Cruz Saavedra
• 0
Hi Recently, I used https://www.gensas.org/ to make the annotation. It was pretty practical and in my opinion easy. You just need to up…
Comment: Hybrid assembly Pacbio- Nanopore
by
Lissa Cruz Saavedra
• 0
Hi Thanks for your answer. I think I have very good coverage. My genome size is 48M. I also have data from poreC and illumina, the last on…
Comment: Variant calling of GBS data
by
analyst
▴ 10
Anyone please suggest which variant caller can be the best choice for variant calling of GBS data for polyploid plant.
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