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1,000 results • Page
3 of 20
Sort: replies
Rank
Views
Votes
Replies
2
votes
10
replies
2.3k
views
how to use dbSNP
snp
updated 19 days ago by
Ram
37k • written 7.7 years ago by
Zhan
▴ 10
32
votes
10
replies
7.8k
views
6 follow
Ucsc/Ensembl Bam Converter?
bam
ucsc
ensembl
reference
updated 19 days ago by
Ram
37k • written 11.6 years ago by
2184687-1231-83-
★ 5.0k
6
votes
10
replies
5.3k
views
(SOLVED) why Cytoscape does not launch?
software-error
cytoscape
updated 24 days ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
9
votes
10
replies
8.0k
views
6 follow
how to remove adapter sequence in RNAseq fastq file from a paper.
RNA-Seq
updated 19 days ago by
Ram
37k • written 7.7 years ago by
cfarmeri
▴ 210
6
votes
10
replies
4.0k
views
multiple bed - merge regions IF overlapping more than xx percent of size
ChIP-Seq
bedops
bedtools
GenomicRanges
updated 19 days ago by
Ram
37k • written 7.7 years ago by
samuelcollombet
▴ 10
6
votes
10
replies
2.8k
views
7 follow
How can I remove contaminants from an assembled genome?
assembly
updated 13 days ago by
shelkmike
▴ 900 • written 2.1 years ago by
eennadi
▴ 20
4
votes
10
replies
3.5k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq
TCGA
updated 4 days ago by
Ram
37k • written 7.7 years ago by
David_emir
▴ 460
10
votes
10
replies
3.2k
views
CLC GW vs. tophat2
tophat
CLC
fastqc
updated 25 days ago by
Ram
37k • written 7.6 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
10
replies
906
views
analyzing a read mapped file with python
alignment
python
reads
updated 25 days ago by
barslmn
★ 1.2k • written 28 days ago by
Manaswini
• 0
7
votes
10
replies
29k
views
6 follow
Converting Sam To Bam
bam
sam
updated 24 days ago by
Ram
37k • written 11.0 years ago by
Haluk
▴ 190
6
votes
10
replies
4.7k
views
Program For Flagging Alternative Splicing Events From A Genome Annotation
updated 25 days ago by
Ram
37k • written 8.9 years ago by
Daniel Standage
4.1k
5
votes
10
replies
679
views
How to configure a data set with mouse data to one with human gene names using a mapping file
bioMart
RNA-seq
18 days ago by
Molang
• 0
3
votes
10
replies
7.1k
views
hmmindex: FATAL: failed to open HMM file Pfam-A.hmm for reading.
software-error
sequencing
Pfam
hmmer
updated 19 days ago by
Ram
37k • written 7.7 years ago by
dago
★ 2.7k
3
votes
10
replies
866
views
Wrong naming of transcript in gtf/gff3
format
gtf
gff3
updated 19 days ago by
Juke34
7.5k • written 28 days ago by
Diego
▴ 70
24
votes
10
replies
6.8k
views
7 follow
Is Transfac Professional Worth The Price?
updated 2 days ago by
nta
• 0 • written 9.8 years ago by
Tky
★ 1.0k
0
votes
10
replies
1.4k
views
How to translate CDS to an amino acid sequence
translation
CDS
sequencing
updated 16 hours ago by
vvasta
• 0 • written 8 months ago by
Max
• 0
6
votes
10
replies
13k
views
calculate z-score from rpkm values.
Z-score
RNA-Seq
GTEx
TCGA
updated 24 days ago by
Ram
37k • written 7.7 years ago by
vyom84
▴ 40
3
votes
9
replies
4.0k
views
Trimmomatics parameters for WGS data quality improvement
genome
next-gen-sequencing
updated 24 days ago by
Ram
37k • written 7.7 years ago by
ravi.uhdnis
▴ 220
5
votes
9
replies
12k
views
How to use Bed file to extract sequence from FASTA file?
ChIP-Seq
fasta
bed
updated 22 days ago by
Ram
37k • written 7.7 years ago by
allyson1115ar
▴ 30
3
votes
9
replies
6.9k
views
Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
R
updated 23 days ago by
Ram
37k • written 7.7 years ago by
Shamim Sarhadi
▴ 220
2
votes
9
replies
356
views
Concatenating 4 files into 1
Concatenate
updated 4 days ago by
DavidStreid
▴ 70 • written 5 days ago by
Roland
▴ 10
6
votes
9
replies
1.8k
views
Identifying repeated genes from multiple lists
gene
R
updated 22 days ago by
Ram
37k • written 7.7 years ago by
Megatron
▴ 10
11
votes
9
replies
1.4k
views
8 follow
easy-to-use, fast genome browser ?
genome
browser
bioinformatics
updated 7 days ago by
GenoMax
125k • written 23 months ago by
jerry
▴ 120
1
vote
9
replies
523
views
Error after installation of AGAT
Perl
AGAT
17 days ago by
L_bioinfo
• 0
14
votes
9
replies
17k
views
7 follow
Error: unable to open file or unable to determine types for file bed file
sequencing
bed
bedtools
updated 22 hours ago by
Neel
▴ 10 • written 8.0 years ago by
sebastianzeki0
▴ 190
17
votes
9
replies
2.4k
views
7 follow
"web browser" compatible genome browsers
genome-browser
updated 8 days ago by
Ram
37k • written 7.7 years ago by
Abhi
★ 1.6k
9
votes
9
replies
4.6k
views
8 follow
how to find SNP positions (for non-bioinformaticians)
snp
dbsnp
BioMart
updated 24 days ago by
Ram
37k • written 7.7 years ago by
CrazyB
▴ 260
7
votes
9
replies
6.5k
views
single- or pair-end small RNA seq for miRNAs?
RNA-Seq
updated 1 day ago by
mbansal
• 0 • written 7.7 years ago by
dario.veneziano
▴ 10
3
votes
9
replies
2.2k
views
ordered genome ?
blast
genome
updated 4 days ago by
Ram
37k • written 7.7 years ago by
Siva
▴ 20
6
votes
9
replies
2.0k
views
7 follow
Survival analysis for several genes
R
RNA-Seq
updated 10 days ago by
krushnach80
★ 1.1k • written 23 months ago by
rogerbear
▴ 10
9
votes
9
replies
1.7k
views
GSEA from broad institute normalization method
RNA-Seq
updated 5 days ago by
benformatics
3.4k • written 2.0 years ago by
Rob
▴ 160
7
votes
9
replies
3.2k
views
6 follow
Analysis Big Data from Hi-C--> a way to find significant interaction?
R
HiC
updated 6 days ago by
jocelyn.petitto
▴ 10 • written 7.6 years ago by
Baptiste
▴ 90
0
votes
9
replies
2.7k
views
The soapfuse running problem
soapfuse
updated 22 days ago by
Ram
37k • written 7.7 years ago by
syxbestmayer
▴ 10
2
votes
9
replies
826
views
Differential expression analysis
RNA-seq
R
updated 10 days ago by
Lada
▴ 10 • written 3 months ago by
雨
▴ 20
7
votes
9
replies
7.6k
views
merge chipseq peaks with bedtools/other tool
ChIP-Seq
bedtools
macs2
updated 22 days ago by
Ram
37k • written 7.7 years ago by
s.vdrzeeuw
▴ 20
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 25 days ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
13
votes
9
replies
14k
views
how to extract best hits of blast in terms of e-value, identity,...?
blast
RNA-Seq
alignment
updated 23 days ago by
Ram
37k • written 7.7 years ago by
seta
★ 1.7k
0
votes
9
replies
433
views
Running ANNOVAR table_annovar.pl. Error convert2annovar.pl: not found
ANNOVAR
perl
Annotation
VCF
24 days ago by
vvs.hazia
• 0
7
votes
9
replies
5.0k
views
Tophat2 shows error during running
RNA-seq
Python
Tophat
updated 4 days ago by
Ram
37k • written 7.7 years ago by
Whoknows
▴ 950
7
votes
9
replies
5.7k
views
Paired bowtie2: 91% overall alignment but 0.01% concordant - should I be worried?
alignment
bowtie2
updated 9 days ago by
Ram
37k • written 7.7 years ago by
Bilal Akil
▴ 30
4
votes
8
replies
831
views
PennCNV - How to remove samples at once.
PennCNV
6 days ago by
Viktor Messi
• 0
5
votes
8
replies
5.6k
views
Same sample with seperete bam files
merge
bam
updated 5 days ago by
Ram
37k • written 7.7 years ago by
nuketbilgen
▴ 40
1
vote
8
replies
2.7k
views
Efficient means of mass converting Affy SNP IDs to dbSNP rs ids
affy
dbSNP
Perl
Bash
Python
updated 24 days ago by
Ram
37k • written 7.7 years ago by
devenvyas
▴ 720
0
votes
8
replies
2.3k
views
matchprobes for R
alignment
updated 23 days ago by
Ram
37k • written 7.7 years ago by
gizemtatar
• 0
28
votes
8
replies
10k
views
10 follow
How to remove reads associated with a specific region from bam file?
alignment
RNA-Seq
samtools
updated 9 days ago by
Ram
37k • written 7.7 years ago by
noushin.farnoud
▴ 120
0
votes
8
replies
7.5k
views
cuffmerge error: IOError: [Errno 2] No such file or directory: '\xe2\x80\x93g'
cuffmerge
IOError
Errno2
linux-mint
updated 18 days ago by
Ram
37k • written 7.7 years ago by
pedereri
▴ 10
3
votes
8
replies
2.5k
views
7 follow
Non coding RNA expression data
gene-expression
RNA-Seq
updated 8 days ago by
Ram
37k • written 7.7 years ago by
jack
▴ 960
6
votes
8
replies
3.1k
views
Principal component analysis in R on expression data
PCA
R
updated 24 days ago by
Ram
37k • written 7.7 years ago by
Ron
★ 1.1k
3
votes
8
replies
463
views
information about genes from different databases and patents
databases
gene
patent
updated 10 days ago by
joe
▴ 350 • written 10 days ago by
juliadmtr
• 0
2
votes
8
replies
743
views
Practical Haplotype Graph Consensus and Imputation Specifications
practical-haplotype-graph
phg
1 day ago by
tkosfeld
• 0
1,000 results • Page
3 of 20
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Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
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Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
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Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
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``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
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