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Recent Replies
Answer: Renaming fasta files with their headers
by
shenwei356
8.3k
I've got a general method, but you need to have some basic knowledge of regular expressions. If not, please learn them for 30 minutes:
-…
Comment: Renaming fasta files with their headers
by
liorglic
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1.3k
It's hard to understand what your input and desired output look like. Please edit your original question so it includes a clear explanation…
Comment: Renaming fasta files with their headers
by
sebabiokr
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10
Thank you for your code, but i have a fasta file which contains [gene=rps12] ids, so i want to rename the header with gene id alone like >r…
Answer: How to speed-up to contruct phylogenetic tree
by
Mensur Dlakic
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25k
It depends on how long your protein is. Generally speaking, it shouldn't take weeks or months. Trees with more than ~100 branches are very …
Comment: How to speed-up to contruct phylogenetic tree
by
liorglic
★
1.3k
Is there a specific reason you need to use MEGA? Maybe try another software which might be faster (e.g. PhyML, RaxML, IQ-TREE). Also, do yo…
Answer: Renaming fasta files with their headers
by
liorglic
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1.3k
Assuming that you have a directory containing multiple files with `.fasta` extension, each containing one record, you can do something like…
Comment: What are the methods to correlate/study metabolomics data to proteomics data?
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LauferVA
3.8k
thank you, @wuschel, for the comprehensive reply.
Comment: Renaming fasta files with their headers
by
sebabiokr
▴
10
i tried this command
awk -F 'gene=|]|[.]{1}' '/^>/ {print $2}' 7seqNC_018552.1cds.fasta > 7NC_018552.fasta
got only gene name alone wit…
Answer: Converting a .frq file to a data frame?
by
zau saa
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70
simply add a word to line 1 as the name of column 6
Comment: SRA toolkit (NCBI) - sra to fasta
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Sanjukta
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Hi there, will it be an issue if we do not mention 60?
Comment: Renaming fasta files with their headers
by
sebabiokr
▴
10
Yes there are many answer in this forum but they are specific to header line. it doesnot work with my header line and its difficult for me …
Answer: What are the methods to correlate/study metabolomics data to proteomics data?
by
WUSCHEL
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740
There are various methods to correlate and study metabolomics data to proteomics data. These methods can be broadly categorized into:
1. C…
Comment: Renaming fasta files with their headers
by
Mensur Dlakic
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25k
This type of question is among the most frequently asked on this forum. Searching through previous posts should give you several different …
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LauferVA
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they are still actively developing it. it will continue to get some of the functionality that gpt3.5 has over time.
val
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