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Recent Replies
Comment: How to determine E. coli MLST (Multi Locus Sequence Typing ) from the sequencing
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Give the sequences to an MLST server or commandline tool on a per-sample/isolate basis.
The tool will specify the format it wants - probab…
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Thank you very much. i will try it
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Datasets 1 and 2 have nothing in common to serve as batch correction "anchor" (literally speaking), so you cannot correct for anything here…
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What do you want to compare?
1) You can compare pairwise, like TS vs EOT and TS vs FU and EOT vs FU.
That would be
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Ah, there is nothing in your post to suggest you are looking for a specific parameter to ignore a specific warning. I would suggest you edi…
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You can use
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here https://stackoverflow.com/a/1521498 is an example how to use read and for loop, you just need to put in your command.
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datasets download genome accession --inputfile accessions.txt --include gff3,gbff,rna,cds,protein,genome,seq-report
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Or you…
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First I advise you to take time to correctly edit your post so that your code is readable. Secondly, you provide a lot of irrelevant code l…
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hi there, thanks for the reply, is it possible to disclose an example of ./datasets script for that? thank you very much. i m currently try…
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> you can use the commands of curl , wget and slow5curl to download the data from database.
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Makes no sense in my opinion. It's different experiments that cannot be quantitatively compared.
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by means of that, how should i write my scripting?
say i have
GCF000001
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btw sorry if i wasn't that clear with the …
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Thank you for your detailed answer. I will check the reads and compare them with chemistry manual as you suggested.
Thank you again for yo…
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Thank you @atpoint for your response. However, aim of analysing to generate a matrix with all dataset available after batch correction.
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