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411 results • Page
2 of 9
Sort: Views
Rank
Views
Votes
Replies
1
vote
7
replies
3.2k
views
Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
sam
bwa
SequenceDictionary
updated 9 hours ago by
Ram
38k • written 4.7 years ago by
kat
▴ 40
9
votes
20
replies
3.2k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 9 hours ago by
Ram
38k • written 4.6 years ago by
marongiu.luigi
▴ 670
1
vote
1
reply
3.1k
views
Forum:
RNAseq validation using qPCR
next-gen
RNA-Seq
updated 12 hours ago by
Ram
38k • written 7.7 years ago by
phalange.re
• 0
2
votes
1
reply
3.1k
views
Vcf file to vcf.gz
VCF
updated 7 hours ago by
Ram
38k • written 2.1 years ago by
shiwali-goyal
• 0
0
votes
0
replies
3.0k
views
Job:
Postdoctoral research fellow in biological data mining and modeling @ Bioinformatics Institute, Singapore
Chemoinformatics
R
machine-learning
updated 11 hours ago by
Ram
38k • written 7.7 years ago by
Lit-Hsin Loo
• 0
12
votes
20
replies
3.0k
views
7 follow
How to write out a ID and AA sequence from a SWISS PROT database file into a new file in a specific order using python?
protein
python
updated 8 hours ago by
Ram
38k • written 15 months ago by
M.O.L.S
▴ 100
2
votes
2
replies
2.9k
views
R:how to read bed file with identical Famliy ID by read.plink
bed
plink
R
updated 7 hours ago by
Ram
38k • written 6.7 years ago by
zwang10
▴ 30
4
votes
9
replies
2.9k
views
impute2 output files to vcf
vcf
impute2
updated 6 hours ago by
Ram
38k • written 3.3 years ago by
tarek.mohamed
▴ 350
1
vote
3
replies
2.9k
views
compare genotypes in two vcf files
vcf
genotype
updated 9 hours ago by
Ram
38k • written 5.5 years ago by
tarek.mohamed
▴ 350
9
votes
16
replies
2.9k
views
6 follow
covert SAM to full length fasta
fasta
SAM
updated 9 hours ago by
Ram
38k • written 4.6 years ago by
marongiu.luigi
▴ 670
21
votes
23
replies
2.8k
views
7 follow
Very low mapping rate of a bam file, reasons?
next-gen
alignment
bam
updated 8 hours ago by
Ram
38k • written 6.9 years ago by
nidoo.beg
▴ 20
1
vote
2
replies
2.8k
views
Convert Impute2 phased output files to mach format
imputation
impute2
mach
updated 6 hours ago by
Ram
38k • written 8.5 years ago by
kindlychung
▴ 60
2
votes
10
replies
2.8k
views
Create annotation file for mature miRNA sequences from mirBase
gtf
miRNA
gff
mirBase
updated 9 hours ago by
Ram
38k • written 6.7 years ago by
polag03
• 0
0
votes
0
replies
2.7k
views
Job:
PhD studentship in Bioinformatics
proteomics
proteome
updated 12 hours ago by
Ram
38k • written 7.7 years ago by
gohwils
• 0
3
votes
7
replies
2.7k
views
Rmoving - from sequence data fasta file
fasta
aliview
updated 8 hours ago by
Ram
38k • written 5.0 years ago by
James
▴ 20
2
votes
7
replies
2.6k
views
7 follow
Using AWS for Bioinformatics
unix
Cluster
updated 34 minutes ago by
Simon
▴ 10 • written 16 months ago by
dk0319
▴ 40
0
votes
11
replies
2.6k
views
Affymetrix Power Tools Error
software-error
CEL
APT
Microarray
gene
updated 6 hours ago by
Ram
38k • written 6.6 years ago by
Steve
▴ 10
1
vote
0
replies
2.6k
views
Job:
Postdoctoral Fellow and/or Staff Scientist on Data Visualization at Mount Sinai School of Medicine, NY
NY
data-visualization
scientist
postdoc
11 hours ago by
Ram
38k
6
votes
20
replies
2.6k
views
problem with vcf file
vcf
linux
SNP
updated 6 hours ago by
Ram
38k • written 6.0 years ago by
ahmedaljumiliy
▴ 40
1
vote
4
replies
2.6k
views
Re-naming just part of header in fasta file
fasta
updated 8 hours ago by
Ram
38k • written 7.0 years ago by
seta
★ 1.8k
2
votes
4
replies
2.5k
views
How to merge gff3 files?
gff3
RNA-Seq
updated 9 hours ago by
Ram
38k • written 2.7 years ago by
maureenwidyawan
• 0
2
votes
4
replies
2.5k
views
Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 files
bed
bedtools
updated 7 hours ago by
Ram
38k • written 3.4 years ago by
camerond
▴ 180
3
votes
1
reply
2.4k
views
Finding downstream Gene Closest To A Given Location
closest
bed
bedtools
gene
updated 7 hours ago by
Ram
38k • written 6.4 years ago by
PAn
▴ 20
0
votes
8
replies
2.4k
views
Split paired-end reads BAM file into Forward and Reverse Strands
RNA-seq
BAM
updated 8 hours ago by
Ram
38k • written 2.3 years ago by
GA
• 0
0
votes
1
reply
2.4k
views
How to create Hi-C analysis package HiFive fend object
Hi-C
hicup
hifive
bed
python
updated 9 hours ago by
Ram
38k • written 7.6 years ago by
jacel
• 0
4
votes
17
replies
2.4k
views
Selecting intergenic regions
grep
shell
updated 6 hours ago by
Ram
38k • written 4.8 years ago by
vinayjrao
▴ 220
1
vote
2
replies
2.3k
views
Interpreting bed file...
bed
bam
gff
updated 7 hours ago by
Ram
38k • written 7.0 years ago by
ab.tsubaki
▴ 50
4
votes
10
replies
2.3k
views
Picard ERROR:INVALID_VERSION_NUMBER of sorted BAM file
picard
sam
updated 9 hours ago by
Ram
38k • written 4.5 years ago by
marongiu.luigi
▴ 670
1
vote
3
replies
2.3k
views
Convert KEGG KGML file to JSON format
KGML
KEGG
updated 7 hours ago by
Ram
38k • written 5.5 years ago by
mia
▴ 70
2
votes
1
reply
2.2k
views
Job:
Senior Bioinformatics Analyst/Programmer in the Center for Translational Neuromedicine at the University of Rochester Medical Center in Rochester, NY
microarray
neuroscience
RNA-Seq
updated 11 hours ago by
Ram
38k • written 7.7 years ago by
Adamc
▴ 680
3
votes
6
replies
2.2k
views
bwa and bowtie2 bamfile format
bam
bowtie2
bwa
updated 9 hours ago by
Ram
38k • written 6.4 years ago by
nkinney06
▴ 90
1
vote
1
reply
2.2k
views
getting fasta sequences(proteome) from a file referencing another fasta file (tf)of the same organism
fasta
updated 9 hours ago by
Ram
38k • written 6.9 years ago by
kws15
▴ 40
5
votes
8
replies
2.1k
views
lift coordinates mapping to_alt chromosomes in hg38
ngs
bed
updated 7 hours ago by
Ram
38k • written 6.2 years ago by
bioguy24
▴ 220
0
votes
1
reply
2.1k
views
Creating a fasta file
fasta
UCSC-Genome-browser
updated 9 hours ago by
Ram
38k • written 7.0 years ago by
azadtanzinache
• 0
14
votes
15
replies
2.1k
views
fastq parsing inefficiencies with python
python
RNA-Seq
updated 7 hours ago by
Ram
38k • written 5.1 years ago by
brismiller
▴ 50
5
votes
23
replies
2.1k
views
Please help with connecting the part of the header in a fasta file with another text file
programming
fasta
updated 9 hours ago by
Ram
38k • written 6.7 years ago by
seta
★ 1.8k
2
votes
4
replies
2.1k
views
VCF tools --freq output file
allele-frequency
VCFtools
updated 6 hours ago by
Ram
38k • written 2.7 years ago by
Inquisitive8995
▴ 270
2
votes
1
reply
2.0k
views
Uniquely mapped PAIRS of reads
bam
samtools
updated 8 hours ago by
Ram
38k • written 6.8 years ago by
abascalfederico
★ 1.2k
1
vote
2
replies
2.0k
views
how to construct CDS by using annotation file (coordinates) properly ???
CDS
coordinate-system
BAM
updated 8 hours ago by
Ram
38k • written 5.5 years ago by
adeena_hassan
▴ 50
0
votes
1
reply
2.0k
views
Problem to remove subset of patients with plink
plink
PED
updated 6 hours ago by
Ram
38k • written 5.0 years ago by
Ginevra
• 0
0
votes
5
replies
2.0k
views
Errors in BED line using samtools bedcov
bed
samtools
updated 7 hours ago by
Ram
38k • written 3.1 years ago by
karmacram
• 0
4
votes
7
replies
2.0k
views
How to move the files from sub folder and sub-sub folders into one other folder?
bash
updated 10 hours ago by
Ram
38k • written 20 months ago by
mathavanbioinfo
▴ 70
1
vote
3
replies
2.0k
views
extracting orphan reads from bam file
bam
samtools
bwa
updated 8 hours ago by
Ram
38k • written 4.8 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
1
reply
2.0k
views
admixTools convertf error on ped file: "snp order check fail; snp list not ordered"
convertf
ped
snp
admixtools
updated 6 hours ago by
Ram
38k • written 3.7 years ago by
jcolella.jc
• 0
0
votes
4
replies
2.0k
views
Clustering and Bedtools
bed
bedtools
updated 7 hours ago by
Ram
38k • written 5.7 years ago by
user_g
▴ 20
3
votes
11
replies
2.0k
views
Detecting error in Ubuntu environment
fasta
Ubuntu
updated 7 hours ago by
Ram
38k • written 5.1 years ago by
ArusjakGevorgyan
▴ 20
0
votes
8
replies
1.9k
views
How to extract mutation signatures from a merged vcf file with multiple groups of samples
vcf
mutation-signature
updated 6 hours ago by
Ram
38k • written 3.7 years ago by
sagardesai91
▴ 50
2
votes
9
replies
1.9k
views
SAM file quality check without converting into BAM
Alignment
SAM
updated 9 hours ago by
Ram
38k • written 3.8 years ago by
vaish01kv
• 0
6
votes
3
replies
1.9k
views
Problem when running FeatureCounts
RNA-Seq
RNA
BAM
FeatureCounts
updated 7 hours ago by
Ram
38k • written 2.3 years ago by
luzglongoria
▴ 40
1
vote
0
replies
1.9k
views
Job:
Web Developer RCSB Protein Data Bank at UC San Diego
Java
Protein-Data-Bank
JavaScript
updated 11 hours ago by
Ram
38k • written 7.7 years ago by
peter.rose
▴ 110
411 results • Page
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