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115 results • Page
2 of 3
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1
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3
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941
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Job:
DADA2/R Programmer Needed for One-Time Job
R
microbiome
dada2
updated 3 minutes ago by
Ram
39k • written 3.6 years ago by
espop23
▴ 60
1
vote
3
replies
101
views
Obtain a --gene-trans-map file after rnaSPAdes
rnaSPAdes
Trinity
4 hours ago by
UserA
• 0
1
vote
0
replies
675
views
Forum:
What are the 10 most exciting developments on the horizon in precision medicine?
precision-medicine
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
Vincent Laufer
★ 2.9k
1
vote
0
replies
1.3k
views
Job:
Variant Analyst-Genomics at UAB, Birmingham, Alabama
variant-analyst
exome
disease
genomics
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
cgds
▴ 10
1
vote
1
reply
129
views
Is there a way to add a transcript to EnsDb.Hsapiens.v86?
ensembldb
GenomicFeatures
R
Bioconducter
EnsDb.Hsapiens.v86
15 hours ago by
Daniel
▴ 30
1
vote
0
replies
25
views
How to predict gene amplification from RNAseq and ATACseq data?
amplification
ATAC
3 hours ago by
Dan
▴ 120
1
vote
0
replies
1.6k
views
Job:
Research Scientist Bioinformatics at Evotec (Goettingen, Germany)
data-analysis
multi-omics
RNA-Seq
Proteomics
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
Manuel Landesfeind
★ 1.4k
1
vote
0
replies
1.4k
views
Job:
Scientist - Genomics & Proteomics at the Chan Zuckerberg Biohub (San Francisco, CA)
proteomics
genomics
software
sequencing
updated just now by
Ram
39k • written 3.6 years ago by
keith.cheveralls
▴ 10
0
votes
0
replies
6
views
Get relationships and hierarchies for GO terms
GO-terms
Gene-onthology
43 minutes ago by
DanielEB_fisk
• 0
0
votes
0
replies
6
views
Visualizing Graph Alignment Format via minigraph
graph
gaf
minigraph
alignment
25 minutes ago by
ivazirabad
• 0
0
votes
0
replies
529
views
News:
Advanced Python course
Genomics
Python
updated 19 minutes ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
499
views
News:
The precisionFDA BioCompute Object App-a-thon submission period ends in 1 week!
app-a-thon
biocompute
precisionFDA
updated 17 minutes ago by
Ram
39k • written 3.6 years ago by
hollystephens723
▴ 70
0
votes
0
replies
840
views
Job:
Postdoc in Bioinformatics at the Department of Molecular Medicine (MOMA), Aarhus University
postdoc
aarhus
moma
denmark
updated 1 minute ago by
Ram
39k • written 3.6 years ago by
Gabriel R.
★ 2.9k
0
votes
0
replies
1.2k
views
Job:
Bioinformatician: NEW YORK CITY - Institute for Data Science and Genomic Technology, Mount Sinai School of Medicine
microbiome
bioinformatician
systems-biology
updated just now by
Ram
39k • written 3.6 years ago by
supindab
▴ 30
0
votes
0
replies
1.0k
views
Assembly error on Ipyrad step 3: ERROR IPyradError(None)
rad-seq
ipyrad
updated 8 minutes ago by
Ram
39k • written 3.6 years ago by
mgpastos
▴ 10
0
votes
2
replies
216
views
Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads that have MT in RNEXT field
RNEXT
filtering
mitochondrial_reads
ATAC-Seq
samtools
updated 21 hours ago by
benformatics
3.6k • written 1 day ago by
sam7459
• 0
0
votes
7
replies
550
views
Why are some WES VCFs larger than others?
WES
sequencing
genomics
NGS
exome
21 hours ago by
Kermit
▴ 80
0
votes
0
replies
1.1k
views
Job:
Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
bioconductor
biostatistics
updated 3 minutes ago by
Ram
39k • written 3.6 years ago by
Fred Hutch (Recruiting)
▴ 10
0
votes
0
replies
560
views
News:
The BioCompute Object (BCO) App-a-thon Submission Period Ends Tomorrow!
app-a-thon
biocompute
precisionFDA
updated 3 minutes ago by
Ram
39k • written 3.6 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
970
views
Job:
PhD candidate position in Computational Biology and Gene Regulation
Genomics
Gene-regulation
DNA-methylation
updated 3 minutes ago by
Ram
39k • written 3.6 years ago by
Anthony Mathelier
▴ 890
0
votes
2
replies
1.2k
views
Job:
Computational Biologist / Bioinformatician Required - Cambridge
pipelines
ngs
next-gen
r
updated 2 minutes ago by
Ram
39k • written 3.6 years ago by
jfisher
• 0
0
votes
5
replies
14
views
Trying to edit VCF file
snpsaurus
VCF
R
bcftool
cluster
updated just now by
Pierre Lindenbaum
154k • written 14 minutes ago by
peavy
• 0
0
votes
0
replies
43
views
Prediction of altrered metabolites from altered gene expression
Gene
Metabolites
10 hours ago by
english.server
▴ 290
0
votes
4
replies
160
views
Getting same value for start and end position, "DNA methylation"
DNAmethylation
methylkit
updated 9 hours ago by
ATpoint
72k • written 14 hours ago by
Pankaj
• 0
0
votes
0
replies
46
views
Why sone miRNAs are not present in TCGA data
TCGA
miRNA
RNA-seq
8 hours ago by
nicolo.gualandi
• 0
0
votes
6
replies
348
views
Impute haplotypes (ImputePipelinePlugin) execution error - PHG
phg
8 hours ago by
jrodrigu
• 0
0
votes
5
replies
387
views
convert data frame with character column to data frame with integer column
r
updated 12 hours ago by
Basti
★ 1.5k • written 3 days ago by
atemedorri137798
• 0
0
votes
0
replies
898
views
Job:
Postdoctoral opportunity in Computational Epigenomics at NIH, Baltimore
next-gen-sequencing
RNA-seq
ATAC-seq
updated just now by
Ram
39k • written 3.6 years ago by
mia86sung
▴ 10
0
votes
3
replies
126
views
CNNScoreVariants Error
CNNscore
updated 5 hours ago by
Pierre Lindenbaum
154k • written 11 hours ago by
bestone
▴ 10
0
votes
0
replies
32
views
Error occured at the PHG imputation step: allele in genotype not in the variant context
PHG
Imputation
PracticalHaplotypeGraph
Haplotype
5 hours ago by
xeod21
• 0
0
votes
2
replies
142
views
Data is not displaying in DATABASE......error is not showing in IDE
SERVER
DATABASE
PHP
4 hours ago by
Souvik
• 0
0
votes
2
replies
82
views
Embryo transcriptome
database
transcriptome
SRA
updated 4 hours ago by
Basti
★ 1.5k • written 5 hours ago by
firefox91
• 0
0
votes
2
replies
82
views
Installation of PPFinder
gene-prediction
PPFinder
pseudogene
updated 3 hours ago by
Ram
39k • written 6 hours ago by
subashini.fbtpb106
• 0
0
votes
0
replies
37
views
How to extract only neutral markers from low-coverage whole genome sequencing?
low-coverage
whole-genome-sequencing
updated 3 hours ago by
Ram
39k • written 6 hours ago by
beausoleilmo
▴ 530
0
votes
3
replies
182
views
Convert Bam file to Fastq
Fastq
Bam
updated 3 hours ago by
Ram
39k • written 22 hours ago by
وفاء
• 0
0
votes
3
replies
157
views
variant allelic fraction
vep
updated 3 hours ago by
Ram
39k • written 22 hours ago by
malm
• 0
0
votes
0
replies
92
views
Job:
Data Engineer / Bioinformatician- AZ-Crick-Imperial College: Molecular Glue Discovery Partnership
data-engineering
drug-discovery
data-science
updated 3 hours ago by
Ram
39k • written 22 hours ago by
Sergio Martínez Cuesta
▴ 220
0
votes
1
reply
133
views
Pairwise Alignment
Pairwise-Alignment
updated 3 hours ago by
Ram
39k • written 1 day ago by
Fatemeh
• 0
0
votes
4
replies
114
views
Difference between USCS exon coordinates and ensembl
exons
Ensembl
3 hours ago by
amy__
▴ 50
0
votes
0
replies
114
views
Pore-C-Snakemake output files
contacts
updated 14 hours ago by
zhang yi xing
▴ 10 • written 5 days ago by
oksana03fel
• 0
0
votes
0
replies
39
views
Diff Bind Questions
DiffBind
CHiP-Seq
updated 3 hours ago by
Ram
39k • written 4 hours ago by
B.N.
• 0
0
votes
2
replies
149
views
WGCNA Trait File Issues
correlation
Deseq2
Gene
WGCNA
updated 14 hours ago by
LChart
2.6k • written 23 hours ago by
Jennifer M
• 0
0
votes
1
reply
95
views
Perl. How to retrieve data until a keyword in GenBank?
fasta
sequence
GenBank
perl
updated 2 hours ago by
JC
13k • written 20 hours ago by
Fungi-Beware!
▴ 10
0
votes
1
reply
56
views
CHiP-Seq Questions
DiffBind
CHiP-Seq
updated 2 hours ago by
jared.andrews07
★ 14k • written 3 hours ago by
B.N.
• 0
0
votes
0
replies
14
views
Label free quantification in Proteome discoverer software
proteomics
quantification
spectrometry
shotgun
2 hours ago by
eqoa45
• 0
0
votes
0
replies
650
views
Job:
Permanent bioinformatics staff position in Uppsala, Sweden
RNA-Seq
single-cell
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
Juke34
7.9k
0
votes
0
replies
1.1k
views
Job:
Postdoctoral position in Computational Biology at INGM
postdoc
ncRNAs
genomics
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
sinhashruti
• 0
0
votes
0
replies
1.2k
views
Job:
Postdoctoral Fellow at Center for Microbiome Innovation, University of California, San Diego
sequencing
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
cellimage.icml
• 0
0
votes
1
reply
1.8k
views
Job:
Postdoctoral Fellow or Research Scientist in ShanghaiTech (Shanghai, China)
postdoc
china
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
haiya8102
• 0
0
votes
0
replies
687
views
Job:
Postdoctoral researcher position in DNA data storage
DNAstorage
postdoc
france
updated 1 hour ago by
Ram
39k • written 3.7 years ago by
raja.appuswamy
▴ 10
115 results • Page
2 of 3
Recent Votes
Answer: Perl script running slow with big files
C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
A: Forward And Reverse Strand Conventions
Comment: hisat2 Error 137
Comment: NCBI API, Perl
Comment: Is hg38 on the multiz 30-way alignment inaccurate?
Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
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Comment: calculate p value and associated z score for snp-gene pair
by
LChart
2.6k
I think researchers would agree that FDR > 0.05 is not significant, though some would argue FDR between 0.05 and 0.1 is OK for an initial f…
Comment: Trying to edit VCF file
by
Pierre Lindenbaum
154k
> When I opened the vcf in excel I noticed that there was still columns for what I removed from the file. please, explain, show the data.…
Comment: hisat2 Error 137
by
Forough
▴ 10
Thank you very much for sending the like. I will try it.
Comment: Which method is the best for using in "dba.count" in Diffbind R package
by
Jo
• 0
Thank you for all the helpful advice and explanations. Can you further explain this part: > "The default normalization factors (based sol…
Comment: VEP tab/vcf - Different output
by
Ram
39k
I don't think so, no. EnsEMBL seems to have come up with a verbose explanation for why they don't want to put in the effort.
Comment: VEP tab/vcf - Different output
by
Jeremy Leipzig
21k
is there any way to report the VCF-style ref and alt in the VEP tabular output?
Comment: Is hg38 on the multiz 30-way alignment inaccurate?
by
Daniel
▴ 30
Thank you! If I understand correctly, it's possible that the coordinates/sequences may not be the same anymore, because the maf files use t…
Comment: NCBI API, Perl
by
alessandro.alma00
• 0
Sorry i didn't want to be rude.. Thank you for helping me, im sorry but its the first time I use API tbh... i will like to retrieve the seq…
Comment: How to perform statistical analysis of label free experiment using results from
by
Ram
39k
Do not add answers unless you're actually answering the question. Use `Add Comment` instead. I've moved your post this time, be careful in …
Answer: Is it possible to add a dendrogram as a top annotation using ComplexHeatmap ?
by
jv
★ 1.2k
this [chapter](https://jokergoo.github.io/ComplexHeatmap-reference/book/index.html) of the ComplexHeatmap reference makes it look like you …
Comment: Is hg38 on the multiz 30-way alignment inaccurate?
by
GenoMax
129k
Not sure if this is relevant: https://www.biostars.org/p/9555543/
Comment: How to quantification proteomics data
by
eqoa45
• 0
Hello, can I ask how did you manage the solution?
Comment: How to perform statistical analysis of label free experiment using results from
by
eqoa45
• 0
Hello, i'm dealing with the same question. How did you manage your data at the end? I was thinking that I don't need to do any extra proces…
Comment: CHiP-Seq Questions
by
jared.andrews07
★ 14k
Sounds like you should do some QC of your ChIP-seq data first to ensure the assay actually worked.
Answer: Perl. How to retrieve data until a keyword in GenBank?
by
JC
13k
The trick over here is to start capturing when you found "LOCUS" and stop when you found "COMMENT", something like: #!/usr/bin/perl …
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