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Limit : this week
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378 results • Page
1 of 8
Sort: replies
Rank
Views
Votes
Replies
39
votes
48
replies
5.0k
views
CUTADAPT in windows
sequencing
updated 3 days ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
20
votes
45
replies
10k
views
9 follow
Tool to separate human and mouse rna seq reads
RNA-Seq
next-gen-sequencing
updated 5 days ago by
Ram
37k • written 7.7 years ago by
Ron
★ 1.1k
99
votes
36
replies
26k
views
32 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 5 days ago by
Jeremy Leipzig
21k • written 9.2 years ago by
14134125465346445
★ 3.6k
68
votes
26
replies
24k
views
15 follow
Tutorial:
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
rna-seq
tutorial
Tutorial
updated 4 days ago by
Ram
37k • written 9.0 years ago by
Istvan Albert
96k
4
votes
22
replies
697
views
bowtie2
sequence
bowtie2
bwa
updated 2 days ago by
GenoMax
125k • written 4 days ago by
ugur
• 0
11
votes
21
replies
7.8k
views
6 follow
Problem with qcovs in blast outfmt 6
outfmt
blast
qcovs
updated 5 days ago by
Ram
37k • written 8.2 years ago by
Bara'a
▴ 270
9
votes
21
replies
8.0k
views
Tool:
BioLabDonkey - new Mac program for molecular biologists
software
biolabdonkey
updated 4 days ago by
Ram
37k • written 3.6 years ago by
vytarasov
▴ 170
41
votes
21
replies
1.9k
views
11 follow
How can I learn how to create a bioinformatics pipeline?
pipeline
updated 5 days ago by
Wayne
★ 1.5k • written 3 months ago by
Jean
▴ 20
76
votes
19
replies
68k
views
13 follow
Tutorial:
How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
samtools
bcftools
htslib
Tutorial
updated 6 days ago by
jcurry01
• 0 • written 4.5 years ago by
otwtgin2010
▴ 520
11
votes
19
replies
3.9k
views
Bacterial GWAS analysis?
genome
gwas
bacteria
updated 5 days ago by
Ram
37k • written 7.7 years ago by
SemiQuant
▴ 70
7
votes
18
replies
5.6k
views
TCR sequence analysis
sequence
updated 3 days ago by
mizraelson
▴ 40 • written 7.6 years ago by
binfeng
▴ 60
5
votes
16
replies
2.1k
views
Extract Cds Fastas From A Gff Annotation
sequencing
genome
gene
updated 4 days ago by
Ram
37k • written 7.7 years ago by
lili3122300
• 0
54
votes
16
replies
4.9k
views
13 follow
Forum:
The new era of bioinformatics: simple and fast tools, fewer and more informative data
kallisto
computational-cost
updated 4 days ago by
Ram
37k • written 7.7 years ago by
Istvan Albert
96k
3
votes
15
replies
1.1k
views
Help selecting WGCNA soft thresholding power
rna-seq
R
WGCNA
transcriptome
2 days ago by
jfaberha
▴ 40
21
votes
14
replies
9.6k
views
8 follow
How to randamly extract reads from a FASTQ file?
fastq
updated 4 days ago by
Ram
37k • written 7.7 years ago by
biolab
★ 1.4k
30
votes
13
replies
22k
views
7 follow
Difference between tSNE and PCA analysis
next-gen
rna-seq
updated 4 days ago by
Yogi
• 0 • written 5.0 years ago by
Qingyang Xiao
▴ 160
13
votes
12
replies
13k
views
6 follow
Normalization Of Rna Sequencing Counts (By Ercc / Gene Length)
rnaseq
normalization
deseq
edger
updated 5 days ago by
Ram
37k • written 9.0 years ago by
Sam
★ 4.6k
39
votes
11
replies
15k
views
11 follow
Best Database Of Transcription Factor Binding Sites
transcription
binding
database
updated 2 days ago by
nta
• 0 • written 11.9 years ago by
Dataminer
★ 2.7k
16
votes
11
replies
8.5k
views
7 follow
get build 37 positions from dbSNP rsIDs
rsID
dbSNP
updated 4 days ago by
Ram
37k • written 5.7 years ago by
Tommy Carstensen
▴ 210
12
votes
11
replies
1.9k
views
Can I always use Galaxy?
galaxy
sequencing
updated 5 days ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
50
votes
11
replies
33k
views
8 follow
Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
RNA-Seq
updated 4 days ago by
Ram
37k • written 8.6 years ago by
thisismytest3023
▴ 200
10
votes
11
replies
3.2k
views
Forum:
48 Replicate RNA-Seq Study Points to Replicates Needed for DGE
RNA-seq
differential gene expression
Forum
updated 4 days ago by
Ram
37k • written 7.7 years ago by
support
▴ 640
10
votes
11
replies
6.1k
views
6 follow
How to work out Z score for heatmaps for RNA seq dataset
R
updated 4 days ago by
ATpoint
68k • written 20 months ago by
v.johnson
▴ 20
3
votes
11
replies
5.0k
views
9 follow
findGenomeMotif.pl in Homer couldn't work properly
ChIP-Seq
Homer
updated 5 days ago by
etiennedanis
▴ 10 • written 5.4 years ago by
xuenjun1
▴ 10
2
votes
11
replies
395
views
bedGraph to bigwig
IGV
Biostar
RNA-SEQ
updated 2 days ago by
colindaven
4.4k • written 2 days ago by
Pegasus
▴ 40
0
votes
10
replies
1.4k
views
How to translate CDS to an amino acid sequence
translation
CDS
sequencing
updated 19 hours ago by
vvasta
• 0 • written 8 months ago by
Max
• 0
24
votes
10
replies
6.8k
views
7 follow
Is Transfac Professional Worth The Price?
updated 2 days ago by
nta
• 0 • written 9.8 years ago by
Tky
★ 1.0k
4
votes
10
replies
3.5k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq
TCGA
updated 4 days ago by
Ram
37k • written 7.7 years ago by
David_emir
▴ 460
9
votes
9
replies
1.7k
views
GSEA from broad institute normalization method
RNA-Seq
updated 6 days ago by
benformatics
3.4k • written 2.0 years ago by
Rob
▴ 160
7
votes
9
replies
3.2k
views
6 follow
Analysis Big Data from Hi-C--> a way to find significant interaction?
R
HiC
updated 6 days ago by
jocelyn.petitto
▴ 10 • written 7.6 years ago by
Baptiste
▴ 90
7
votes
9
replies
6.5k
views
single- or pair-end small RNA seq for miRNAs?
RNA-Seq
updated 1 day ago by
mbansal
• 0 • written 7.7 years ago by
dario.veneziano
▴ 10
2
votes
9
replies
356
views
Concatenating 4 files into 1
Concatenate
updated 4 days ago by
DavidStreid
▴ 70 • written 5 days ago by
Roland
▴ 10
7
votes
9
replies
5.0k
views
Tophat2 shows error during running
RNA-seq
Python
Tophat
updated 4 days ago by
Ram
37k • written 7.7 years ago by
Whoknows
▴ 950
14
votes
9
replies
17k
views
7 follow
Error: unable to open file or unable to determine types for file bed file
sequencing
bed
bedtools
updated 1 day ago by
Neel
▴ 10 • written 8.0 years ago by
sebastianzeki0
▴ 190
3
votes
9
replies
2.2k
views
ordered genome ?
blast
genome
updated 4 days ago by
Ram
37k • written 7.7 years ago by
Siva
▴ 20
2
votes
8
replies
744
views
Practical Haplotype Graph Consensus and Imputation Specifications
practical-haplotype-graph
phg
1 day ago by
tkosfeld
• 0
5
votes
8
replies
5.6k
views
Same sample with seperete bam files
merge
bam
updated 5 days ago by
Ram
37k • written 7.7 years ago by
nuketbilgen
▴ 40
4
votes
8
replies
1.9k
views
Select only sequences that align with X% of a query during blastp search
sequence
blast
alignment
updated 4 days ago by
Ram
37k • written 7.7 years ago by
dago
★ 2.7k
3
votes
8
replies
1.5k
views
Ensembl FTP Mirror in USA? Slow Downloads
ensembl
vep
updated 3 days ago by
jessime.kirk
• 0 • written 2.4 years ago by
QVINTVS_FABIVS_MAXIMVS
★ 2.5k
4
votes
8
replies
831
views
PennCNV - How to remove samples at once.
PennCNV
6 days ago by
Viktor Messi
• 0
3
votes
8
replies
5.6k
views
bwa mem runs slowly the first time
ec2
bwa-mem
updated 4 days ago by
Ram
37k • written 7.7 years ago by
Hatem Elshazly
▴ 60
4
votes
8
replies
4.0k
views
aligning multiple fasta files
Assembly
alignment
RNA-Seq
sequencing
updated 4 days ago by
Ram
37k • written 7.7 years ago by
fi1d18
★ 4.1k
2
votes
8
replies
304
views
How to get names and class information from a list of target IDs from the JASPAR database?
JASPAR
updated 6 days ago by
ATpoint
68k • written 6 days ago by
DNAngel
▴ 240
1
vote
7
replies
364
views
Segmentation Fault error when running salmon quant
mapping
rnaseq
samon
updated 6 days ago by
Medhat
9.5k • written 6 days ago by
Daniel
• 0
2
votes
7
replies
286
views
How to Calulate Allele Frequency from a VCF File?
frequency
allele
VCF
58 minutes ago by
Emoji
• 0
1
vote
7
replies
251
views
Unknown chromosome results in .narrowPeak files
ChIPSeq
chromosomes
unknown
2 days ago by
StacyG
• 0
14
votes
7
replies
317
views
BULK mRNA-seq with UMIs. Do I need to normalize by gene length?
mRNA
UMI
normalization
illumina
DESeq2
updated 3 days ago by
Matthias Zepper
2.8k • written 3 days ago by
txema.heredia
▴ 40
8
votes
7
replies
4.4k
views
7 follow
Genome Rearrangement Detection (From Short Reads Alignment Or Genome Alignment)
structural
genome
alignment
sequencing
updated 6 days ago by
Md
▴ 10 • written 11.6 years ago by
Leszek
4.2k
8
votes
7
replies
11k
views
8 follow
Ribosomal Intervals For Collectrnaseqmetrics
rna-seq
qc
picard
updated 3 days ago by
gimenagomez
• 0 • written 9.9 years ago by
Johan
▴ 880
10
votes
7
replies
743
views
Tutorial:
Sequence Alignment from Scratch with BWA
alignment
bwa
DNA
2 days ago by
barslmn
★ 1.2k
378 results • Page
1 of 8
Recent Votes
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Comment: How to Calulate Allele Frequency from a VCF File?
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You can assemble transcripts without using a reference (de novo): https://github.com/trinityrnaseq/trinityrnaseq/wiki You could then compa…
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any tree is a valid hypothesis
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Hello Mensur, Could you look at my case too? interruption issue but a different error. This is the second time I face and I rerun it. I ha…
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Hello and Thanks! OK, I should have written "The gene lists I have prepared" instead of "The DEG lists I have prepared". In any case, is …
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Can you update your post to show some examples of what's in your `ensembl_ids` object? Perhaps the contents of `head(ensembl_ids)`. It's …
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by
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Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
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