updated 19 hours ago by
GenoMax
141k
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written 6.2 years ago by
Kevin Blighe
87k
76
votes
71
replies
19k
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19 follow
10
votes
36
replies
5.8k
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updated 6 days ago by
Ram
43k
•
written 5.7 years ago by
Kristin Muench
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620
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 5 days ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
23
votes
23
replies
9.8k
views
6 follow
updated 5 days ago by
Ram
43k
•
written 5.3 years ago by
iraia.munoa
▴
130
13
votes
22
replies
11k
views
updated 6 days ago by
Ram
43k
•
written 6.8 years ago by
lessismore
★
1.3k
22
votes
18
replies
6.1k
views
6
votes
17
replies
6.6k
views
updated 6 days ago by
Ram
43k
•
written 9.5 years ago by
james.lloyd
▴
100
34
votes
16
replies
20k
views
9 follow
updated 3 days ago by
Hagen
▴
10
•
written 10.2 years ago by
filipzembol
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180
4
votes
13
replies
838
views
updated 6 days ago by
BioinfGuru
★
1.7k
•
written 11 days ago by
matteo.levorato
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0
5
votes
13
replies
1.0k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 2 days ago by
ATpoint
81k
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written 3 days ago by
BioinfGuru
★
1.7k
54
votes
12
replies
28k
views
12 follow
updated 4 days ago by
kjngo
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0
•
written 12.0 years ago by
Gabriel R.
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2.9k
9
votes
12
replies
4.1k
views
11
votes
12
replies
916
views
8
votes
12
replies
1.9k
views
5 days ago by
Ram
43k
23
votes
11
replies
4.8k
views
7 follow
updated 6 days ago by
Ram
43k
•
written 4.9 years ago by
WouterDeCoster
47k
3
votes
11
replies
5.9k
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updated 6 days ago by
Ram
43k
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written 6.4 years ago by
shania90.lk
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30
6
votes
11
replies
3.3k
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updated 6 days ago by
Ram
43k
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written 5.2 years ago by
Davide Chicco
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120
9
votes
10
replies
6.9k
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2
votes
10
replies
708
views
9
votes
10
replies
4.4k
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updated 6 days ago by
Ram
43k
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written 7.4 years ago by
denalitastic
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30
7
votes
10
replies
2.6k
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6 follow
6
votes
10
replies
1.7k
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2
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10
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3.4k
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11
votes
9
replies
6.9k
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39
votes
9
replies
42k
views
6 follow
updated 6 days ago by
Ram
43k
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written 6.7 years ago by
lessismore
★
1.3k
4
votes
9
replies
2.6k
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Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.2 years ago by
dvelmeshev
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0
1
vote
9
replies
4.7k
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0
votes
9
replies
1.2k
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1
vote
9
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3
votes
9
replies
761
views
updated 4 days ago by
Elisabeth Gasteiger
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2.4k
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written 4 days ago by
Jacky
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0
votes
8
replies
203
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3
votes
8
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1.2k
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6
votes
8
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521
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updated 5 days ago by
dariober
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written 8 days ago by
manaswiniparija3
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40
3
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3
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434
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10
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7
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7.1k
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updated 6 days ago by
george-hall-ucl
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written 9.2 years ago by
win
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970
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788
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updated 4 days ago by
joe
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written 5 days ago by
quentinperriere
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7
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6.0k
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0
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7
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1.9k
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4
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updated 6 days ago by
进
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written 3.9 years ago by
Peter Chung
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200
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7
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1.6k
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2
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updated 3 days ago by
ATpoint
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written 7.1 years ago by
boymin2020
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updated 6 days ago by
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written 6 days ago by
Jérémie
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5
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8
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updated 5 days ago by
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written 23 months ago by
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Recent Replies
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
let me know the scope and scale of the request (e.g. I need to do this for every record in Pubmed) and can help
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
I was able to come up with a workaround using the requests library:
import requests
pmid = 30134295
url = 'https://pubmed.ncbi…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
by
HyperEvo
•
0
Thanks for you answer! Actually I have already filtered my peak according to blacklist by bedtools. You mean it's meaningless to compare on…
Answer: Redirection of Duplicate PMIDs
by
GenoMax
141k
More than likely not since the database query seems to work for the redirected PMID but not the original.
$ esearch -db pubmed -query …
Comment: DYH17 Structure Prediction
by
anasjamshed
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120
Blast showed PDB: 8J07_n9(human) as best template with 62.99%.
I also used swissmodel to model the protein and it showed:
https://swissmod…
Comment: How to slice a gvcf file with tabix?
by
Sd
•
0
Then what is the best way to do slicing for 1Mb windows? Doing `--intervals` in the GenomicsDBImport?
Comment: How to slice a gvcf file with tabix?
by
Pierre Lindenbaum
161k
> What is your suggestion to run GenomicsDBImport efficiently?
call the GVCF by slices eg: chr1:1000000-2000000<br>
run GenomicsDBImport …
Comment: How to slice a gvcf file with tabix?
by
Sd
•
0
I want to run gatk `GenomicsDBImport` tool to build a GenomicsDB. I want to slice it to reduce the computation time since I have 1300 gvcf …
Comment: Problem to remove subset of patients with plink
by
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The first step has to be taken outside of PLINK here. E.g. append "_1" and "_2" to the duplicated IDs in the .ped or .fam file, then menti…
Comment: Error in cnetplot enrichplot package
by
Ram
43k
Show us the exact call to `cnetplot()` with a sample of all input parameters. Did you compare notes with your friend?
Answer: How to slice a gvcf file with tabix?
by
Pierre Lindenbaum
161k
why would you need to slice a gvcf file ? all the tools in gatk can use a BED / interval / chromosome to narrow the analysis
Comment: Error in cnetplot enrichplot package
by
Farhad
•
0
I check dataframe it has more than 2 columns
Comment: Error in cnetplot enrichplot package
by
Farhad
•
0
We write it to csv and then send it via email
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