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Limit : this week
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848 results • Page
2 of 17
Sort: replies
Rank
Views
Votes
Replies
4
votes
11
replies
1.6k
views
Use BLAST Command Line Applications on combined FASTA files
BLAST
updated 3 days ago by
Ram
38k • written 18 months ago by
daver.v
▴ 30
10
votes
11
replies
1.5k
views
How to get specific information from a list of PDB ID and save all in a spreadsheet?
csv
biopython
pdb
updated 3 days ago by
Ram
38k • written 12 months ago by
Welington
▴ 10
6
votes
11
replies
646
views
Calculate RPKM
RPKM
5 hours ago by
Chris
▴ 70
11
votes
11
replies
9.9k
views
Convert fastq.gz to fastq.bgz
NGS
FASTQ
updated 3 days ago by
Ram
38k • written 5.2 years ago by
caspase8mach
▴ 20
3
votes
11
replies
2.3k
views
mm9 RNA-seq reference genome
alignment
sequencing
RNA-seq
gene
updated 6 days ago by
Ram
38k • written 4.5 years ago by
mikysyc2016
▴ 120
5
votes
11
replies
5.8k
views
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
HuEx-1_0-st
R
updated 15 hours ago by
Ram
38k • written 5.0 years ago by
vinnu260
▴ 20
16
votes
11
replies
7.3k
views
Tutorial:
How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking
meta
how-to
documentation
6 days ago by
Ram
38k
1
vote
11
replies
1.5k
views
Extract information from gtf file
GTF
updated 3 days ago by
Ram
38k • written 13 months ago by
Human
• 0
16
votes
11
replies
13k
views
7 follow
Tutorial:
retrieve full TCGA datasets from cBioportal with R
TCGA
RNA-seq
data-retrieval
cBioportal
R
updated 6 days ago by
Ram
38k • written 6.4 years ago by
TriS
★ 4.6k
5
votes
11
replies
3.0k
views
Convert Plink to Arlequin
software-error
plink
Arlequin
PGDSpider
updated 6 days ago by
Ram
38k • written 4.9 years ago by
HG
▴ 30
6
votes
10
replies
4.2k
views
Tutorial:
Differentially methylated regions: Easy & Fast Identification and ANnoTation
DMR
dna-methylation
updated 6 days ago by
Ram
38k • written 5.1 years ago by
dec986
▴ 340
11
votes
10
replies
3.3k
views
Forum:
Thinking of going into Bioinformatics
career
updated 3 days ago by
Ram
38k • written 6.4 years ago by
Eeyore88
▴ 40
3
votes
10
replies
2.1k
views
Rosetta make_fragments.pl fails: "Cannot initialize readdb for nr database"
software-error
nr
rosetta
updated 3 days ago by
Ram
38k • written 2.9 years ago by
Alex_I
• 0
2
votes
10
replies
5.9k
views
fq.gz file use
BioEdit
R
updated 3 days ago by
Ram
38k • written 4.0 years ago by
choi.yisoo.hi
• 0
3
votes
10
replies
2.0k
views
8 follow
ADMIXTURE Segmentatio fault
admixture
plink
vcf
updated 2 days ago by
1130291485
• 0 • written 21 months ago by
pmc.sa
▴ 40
4
votes
10
replies
1.3k
views
bash script for merging R1 and R2 reads
fastq
bash
illumina
updated 3 days ago by
Ram
38k • written 8 months ago by
ieie
▴ 10
3
votes
10
replies
2.2k
views
CellRanger scRNA .mtx only uses 15% of reads in .bam?
cellranger
single-cell
bam
mtx
scRNA
updated 3 days ago by
Ram
38k • written 3.0 years ago by
Diedes
▴ 20
20
votes
10
replies
4.6k
views
Tutorial:
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
tidyverse
gene
R
updated 6 days ago by
Ram
38k • written 2.5 years ago by
rpolicastro
11k
7
votes
10
replies
1.1k
views
col as names [solved]
R
updated 3 days ago by
Ram
38k • written 4.0 years ago by
demoraesdiogo2017
▴ 90
5
votes
10
replies
1.7k
views
Is it possible to count lines of fastq.gz file in R ?
fastq
R
updated 3 days ago by
Ram
38k • written 18 months ago by
br0104
• 0
11
votes
10
replies
8.7k
views
Select sequences from fastq.gz file
fastq
random-selection
updated 3 days ago by
Ram
38k • written 8.3 years ago by
msameet
▴ 50
2
votes
10
replies
1.2k
views
multiple FASTA sequnces in to one full sequnce according to their chromosome number
NGS
FASTA
bam
updated 3 days ago by
Ram
38k • written 4.0 years ago by
Anu
• 0
4
votes
10
replies
2.8k
views
how to use the samtools filtering expression ?
samtools
updated 3 days ago by
Ram
38k • written 22 months ago by
Hippolyte
• 0
3
votes
10
replies
7.6k
views
UCSC genes annotation of long non-coding RNAs in human
UCSC
lncRNAs
annotation
RNA-Seq
updated 3 days ago by
Ram
38k • written 8.8 years ago by
sasa_k
▴ 10
0
votes
10
replies
2.8k
views
Difficulty using SPAdes - Error relating to access and specificity
SPAdes
software
De-novo
Assembler
updated 3 days ago by
Ram
38k • written 6.0 years ago by
gfrsims
• 0
0
votes
10
replies
6.6k
views
Error: reads file does not look like a fastq file
fastq
bowtie2
ChIP-Seq
updated 3 days ago by
Ram
38k • written 6.5 years ago by
addilynn.beach
▴ 40
8
votes
9
replies
2.6k
views
Sample .sam file
next-gen
sam
alignment
sequence
updated 3 days ago by
Ram
38k • written 6.6 years ago by
torkel.loman
• 0
7
votes
9
replies
8.0k
views
How to make heatmap more bright with proper color spectrum ?
heatmap
genomics
R
updated 6 days ago by
Ram
38k • written 8.2 years ago by
jack
▴ 960
4
votes
9
replies
521
views
Downloading NCBI Blast nt database
nucleotide
blast
nt
genomics
database
updated 4 days ago by
size_t
▴ 60 • written 4 days ago by
rgray
• 0
1
vote
9
replies
11k
views
RNA-seq analysis using R
sequence
alignment
RNA-Seq
R
updated 6 days ago by
Ram
38k • written 4.3 years ago by
justinkablan225
▴ 20
3
votes
9
replies
5.8k
views
bcftools doesn't normalize the vcf file
vcf
bcftools
normalize
updated 15 hours ago by
Ram
38k • written 4.2 years ago by
seta
★ 1.8k
2
votes
9
replies
365
views
STARsolo
STARsolo
scRNAseq
updated 4 days ago by
GenoMax
126k • written 5 days ago by
No.Lar037477
▴ 10
0
votes
9
replies
2.9k
views
MATLAB Volcano Plot
Microarray
r
RNA-Seq
genome
updated 6 days ago by
Ram
38k • written 5.0 years ago by
bikash2510
▴ 30
8
votes
9
replies
5.1k
views
gene filtering for agilent microarray using Limma
agilent microarray
limma
gene filtering
R
updated 15 hours ago by
Kevin Blighe
84k • written 7.6 years ago by
rohit
▴ 60
1
vote
9
replies
2.8k
views
6 follow
Somatic variant call
Mutect2
Varscan
variant-filtering
SNP
updated 15 hours ago by
Ram
38k • written 5.9 years ago by
sktbanerjee1
▴ 30
1
vote
9
replies
2.6k
views
bam to fasta error using samtools
fasta
bam
updated 3 days ago by
Ram
38k • written 6.0 years ago by
christacaggiano
▴ 60
8
votes
9
replies
631
views
Ribo-Seq Analysis
ribo-seq
ribosome
profiling
6 days ago by
phoenix.sum13
▴ 60
31
votes
9
replies
24k
views
11 follow
Tutorial:
installing samtools with conda - overcoming two common errors
samtools
conda
updated 6 days ago by
Ram
38k • written 2.6 years ago by
lavinia.gordon
▴ 140
6
votes
9
replies
4.7k
views
Best Possible set of Python interview questions for Bioinformatics, that a recruiter can ask?
python
updated 13 hours ago by
Ram
38k • written 7.9 years ago by
gaurav.singh
▴ 10
2
votes
9
replies
466
views
Split fastq.gz file
fastq
updated 3 days ago by
Ram
38k • written 5 months ago by
sandy
• 0
2
votes
9
replies
351
views
prefix extraction and preparation for mapping and variant calling
bash
updated 3 days ago by
Joe
20k • written 4 days ago by
Human
• 0
2
votes
9
replies
680
views
Padj Values Problem For Multiple Samples in DESeq2
sequencing
RNA-seq
R
updated 3 days ago by
Ram
38k • written 2.1 years ago by
Aynur
▴ 50
11
votes
9
replies
6.4k
views
Extracting certain columns from VCF file
vcf
genotype
vcftools
exome
updated 3 days ago by
Ram
38k • written 4.8 years ago by
gradstudentNew
▴ 50
5
votes
9
replies
1.9k
views
Program to find genes up/down-regulated by a given gene
geo
upregulated
gene
downregulated
updated 4 days ago by
Ram
38k • written 8.1 years ago by
c_u
▴ 500
3
votes
8
replies
2.0k
views
CDS FASTA file as Reference sequence for Ion Torrent
FASTA
REFERENCE
CDS
bed
next-gen
updated 3 days ago by
Ram
38k • written 5.5 years ago by
serenabivona
▴ 10
3
votes
8
replies
5.8k
views
Help with designing limma contrast matrix
limma
software error
updated 1 day ago by
Kevin Blighe
84k • written 5.0 years ago by
fi1d18
★ 4.1k
10
votes
8
replies
2.5k
views
Visualization of maf alignments in JBrowse
maf
conservation
Multiz-Alignments
updated 3 days ago by
Ram
38k • written 6.9 years ago by
ifreecell
▴ 220
8
votes
8
replies
2.5k
views
Finding important predispositions using R
R
ClinVar
updated 3 days ago by
Ram
38k • written 8.7 years ago by
nilakshafreezon
▴ 120
2
votes
8
replies
458
views
Depth of Coverage in Mitochondrial Genome with Samtools
samtools
depth-of-coverage
Mitochondrial-genome
2 days ago by
Lida
• 0
1
vote
8
replies
1.7k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 6 days ago by
Ram
38k • written 3.4 years ago by
mnazir
• 0
848 results • Page
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Recent Votes
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Comment: samtools idxstats not removing ChrM
The Biostar Handbook. A bioinformatics e-book for beginners.
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
Comment: GATK GenotypeGVCFs explain
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Recent Replies
Comment: GATK GenotypeGVCFs explain
by
Pierre Lindenbaum
153k
https://gatk.broadinstitute.org/hc/en-us/articles/360035531852-Intervals-and-interval-lists
Comment: GATK GenotypeGVCFs explain
by
Sarah
▴ 30
thank you
Comment: GATK GenotypeGVCFs explain
by
raphael.B
▴ 270
It limits the operation to some genomic regions given as parameter
Comment: GATK GenotypeGVCFs explain
by
Sarah
▴ 30
what does the option L
Comment: GATK GenotypeGVCFs explain
by
Pierre Lindenbaum
153k
GenotypeGVCFs takes a set of GVCF files called with HaplotyperCaler and output a VCF file.
Answer: TCGA Methylation Data and Gene Mapping
by
Basti
★ 1.4k
CpGs may be annotated to more than >1 gene simply because gene regions overlap on the genome. If you want to associate each gene to a me…
Comment: Circos plot
by
Fabio Marroni
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Please give a look to [this post][1] for increasing the probability to get an answer. If I may add some needed info: 1. What exactly do y…
Comment: Trying to install Roary with Conda results in error message
by
tobiwan
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Wow, thank you so much for your explanation! My conda channel is indeed set to strict priority. Should packages with different dependencie…
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You can use BioMart to convert your "gene-IDs" to gene symbols, but you need to specify from which database your gene identifiers come from
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If you search "DAVID dotplot" on this forum, you have many answers to your question. Note that you can also perform DAVID Functional Enrich…
Answer: How to implement this two-stage one-to-many workflow using WDL?
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nottested, something like: ``` version 1.0 workflow BIOSTAR { call FIRST { } scatter (F in FIRST.each_F)…
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You can try https://genebe.net , it is similar to Varsome though...
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Hi, free ACMG implementation without restrictions can be found at https://genebe.net . AFAIK there is also a free API coming.
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Gene_MMP8
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I don't have the data available. I want to identify such datasets. The overall aim is to determine what factors influence fastq data qualit…
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★ 23k
I don't know what exactly the error message means. What I can tell you is that a burn-in of 2500 generations is absolutely inadequate. That…
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