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written 9.9 years ago by
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written 3.5 years ago by
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written 8.9 years ago by
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updated 23 hours ago by
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> fastq-dump is deprecated
Curios if there a reference for this? `fasterq-dump` seems to allow for parallel streams but `fastq-dump` is st…
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>In many cases those remain recoverable using the -F option when you dump the data (cloud download not required)
The -F option (or any equ…
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To be specific, not every dataset in SRA loses the original identifiers. In many cases those remain recoverable using the `-F` option when …
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To use different versions of R and bioconductor, you don't really need RStudio. One can simply create new conda environments with the requi…
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Done. Thank you.
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Perhaps add the word linux/ubuntu to the title? You have noted that the instructions are for Ubuntu in text.
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Thanks @Ram I'll add that to the intro. I'm the admin on my machine so I haven't found it necessary to install any other way. I'll try a fr…
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No GPR files with this data unless you ask the submitters for them directly. You can find the matrix of data here: https://ftp.ncbi.nlm.nih…
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Dear all,
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They aren't merging any datasets. Just for reference the paper is this: https://www.nature.com/articles/s41380-022-01674-9#MOESM1. Citing: …
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https://help.galaxyproject.org/
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The tool RSEM, which performs transcript quantification for RNA-Seq data, provides FPKM.
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