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blackadder
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updated 4 days ago by
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written 7 days ago by
CTLong
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updated 5 days ago by
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geneontologyhelp
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written 6 days ago by
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updated 6 days ago by
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updated 18 hours ago by
colindaven
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fracarb8
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5 days ago by
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18 hours ago by
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updated 1 day ago by
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3 days ago by
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updated 6 days ago by
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written 6 days ago by
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11 hours ago by
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4 days ago by
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updated 1 day ago by
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updated 6 days ago by
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written 6 days ago by
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updated 6 days ago by
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written 7 days ago by
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Comment: absolute running error: Error in if (!is.na(res)) { : the condition has length >
by
qiuting
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0
this is the error.log:
Detected error in sample P01_1
Error message: the condition has length > 1
Where:
if !is.na(res) {
mode.tab[(i…
Comment: STAR ALIGNMENT
by
Hải Đăng
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0
Sis, where are you currently working? How can I get in touch with you?
Answer: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
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We already have an incredible number of registrations for this time. If you still want to be there, then you should register soon!
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ATpoint
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Can you please ask a precise question rather than posting a wall of code? What is the main problem you have, what did you try? Did you foll…
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sevda
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Hello,
Thank you for your attention.
It ran successfully and I got no errors or warnings but no new files were created.
Comment: Resolving over clustered NGS with Q-scores
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sam.himes92
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The system that we used was [Aviti][1]. Our sequencing core was the one who quantified the loading/library concentration. Sorry I don't hav…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
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I modified the answer with an approach for that use case.
Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
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Ram
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OP is looking for overlapping genes - genes with presumably different gene IDs that share some loci. I think the `genes.bed` creation logic…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
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Note: The file `snps.bed` will be very large. You'll need sufficient disk space for this step.
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
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Alex Reynolds
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Given files `genes.bed` and `snps.bed`, you could do something like:
```
$ bedmap --echo --echo-map-id --delim '\t' genes.bed snps.bed > a…
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alex.zaccaron
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You can use [AGAT][1] to process your annotation file to add the missing exons. I believe `agat_convert_sp_gxf2gxf.pl -g no_exons.gff -o wi…
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and you got answer that should be validate (green tick), or people asked you questions but got no answers.
Comment: Annotation Visualization IGV
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you asked questions before: review, comment and/or validate them please: https://www.biostars.org/p/9530777/ ; https://www.biostars.org/p/9…
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EK
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Thanks, Jared. Sounds like rounding counts is the simplest approach for now. :)
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