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403 results • Page 2 of 9
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15
votes
8
replies
3.7k
views
Forum: Asking for opinions about Bioinformatics Data Skills book
book
updated 2 days ago by 38k • written 7.7 years ago by 11k
1
vote
1
reply
3.6k
views
docking site in pymol
pymol cluspro
updated 2 days ago by 38k • written 7.6 years ago by ▴ 50
0
votes
4
replies
3.6k
views
Genome size estimation using jellyfish
genome jellyfish kmer
updated 5 days ago by 38k • written 5.5 years ago by ▴ 120
15
votes
5
replies
3.6k
views
Galaxy Workflow Management System Customization - Avoiding Duplication Of Files
galaxy next-gen-sequencing
updated 5 days ago by 38k • written 12.4 years ago by ★ 2.2k
3
votes
4
replies
3.5k
views
How Can I Extract All The Read Pairs In A Region From Bam File ?
bam
updated 5 days ago by 38k • written 9.9 years ago by ▴ 150
2
votes
4
replies
3.4k
views
Trouble Using Bio::Alignio In Perl Script To Covert Alignment To Maf Format
bioperl maf
updated 5 days ago by 38k • written 10.5 years ago by ▴ 20
0
votes
2
replies
3.4k
views
How To Set Rapd Data For Analysis In Excel?
RAPD
updated 5 days ago by 38k • written 10.1 years ago by • 0
0
votes
2
replies
3.4k
views
Interproscan nucleotide sequence scanning
software-error sequence
updated 1 day ago by 38k • written 7.4 years ago by ▴ 230
0
votes
1
reply
3.4k
views
Mirdeep2 Quantifier Module Output Files
mirdeep2
updated 5 days ago by 38k • written 9.1 years ago by • 0
0
votes
0
replies
3.3k
views
Window size and strigency in Dotplot
dot-plot BLAST
updated 2 days ago by 38k • written 7.5 years ago by ▴ 10
2
votes
5
replies
3.3k
views
How To Get Junctions File Using Gsnap
gsnap RNA-seq
updated 5 days ago by 38k • written 10.8 years ago by ★ 1.2k
5
votes
15
replies
3.2k
views
Blast+ Error Code=12
blast
updated 5 days ago by 38k • written 11.2 years ago by ▴ 160
20
votes
7
replies
3.1k
views
Forum: Change career path
education career
updated 1 day ago by 38k • written 7.4 years ago by ▴ 40
2
votes
2
replies
3.1k
views
Genbank file format is wrong?
genbank
updated 5 days ago by 38k • written 8.9 years ago by ▴ 140
0
votes
3
replies
3.0k
views
How to determine the total average insert size from differently divided from one fastq data pool to each reference?
RNA-Seq
updated 5 days ago by 38k • written 4.6 years ago by ▴ 10
2
votes
3
replies
3.0k
views
How To Convert Flowgram Data To Bases (Sequences)? (Or Flow Index To Base Sequence?)
sequence
updated 5 days ago by 38k • written 11.2 years ago by • 0
3
votes
0
replies
3.0k
views
Forum: Join us crowdsourcing an article on what makes a great open-source bioinformatics community
communities open-source crowd-source article
updated 2 days ago by 38k • written 7.7 years ago by 1.9k
9
votes
2
replies
3.0k
views
Good Methodology To Name Rna-Seq Files
rna-seq
updated 5 days ago by 38k • written 9.7 years ago by 10k
4
votes
1
reply
2.9k
views
How Do I Get A Gff Files Or Make My Own For A Bacteriophage?
gtf gff
updated 5 days ago by 38k • written 10.0 years ago by ▴ 90
3
votes
9
replies
2.9k
views
Need recommendation for a virtual machine or linux cluster for ngs analysis
ngs
updated 1 day ago by 38k • written 7.4 years ago by ▴ 220
1
vote
1
reply
2.9k
views
Igvtools
vcf igvtools
updated 5 days ago by 38k • written 9.1 years ago by • 0
2
votes
2
replies
2.9k
views
Create Bed File With 3 Tab Delimited Columns Using Matlab
bed
updated 5 days ago by 38k • written 10.8 years ago by ▴ 10
0
votes
0
replies
2.9k
views
Job: Cancer Bioinformaticist Position - immediate opening!, Comprehensive Cancer Center, University of California San Francisco
RNA-Seq genome R next-gen-sequencing
updated 2 days ago by 38k • written 7.6 years ago by • 0
4
votes
2
replies
2.8k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 2 days ago by 38k • written 7.5 years ago by ★ 2.2k
6
votes
4
replies
2.8k
views
deepTools plot profile problem
deepTools
updated 3 days ago by 38k • written 4.8 years ago by ▴ 120
10
votes
7
replies
2.8k
views
Binning fasta sequences by size?
fasta
updated 5 days ago by 38k • written 5.2 years ago by ▴ 40
7
votes
4
replies
2.8k
views
Why Chip-seq data cross correlation plot has fragment_lenth cross correlation peak and read-length peaks
chip-seq quality-control cross correlation
updated 1 day ago by • 0 • written 3.8 years ago by ▴ 110
0
votes
2
replies
2.8k
views
demultiplexing with guppy_basecaller and guppy_barcoder using --detect_mid_strand_adapter --detect_mid_strand_barcodes produce > 90% of unclassified …
demultiplexing guppy
3 days ago by andres.firrincieli 3.2k
3
votes
2
replies
2.7k
views
Tab Delimited Files Comparison
bash
updated 5 days ago by 38k • written 10.0 years ago by ▴ 100
1
vote
2
replies
2.6k
views
Why FPKM value of gene expression profiles are very close to zero?
next-gen RNA-Seq
updated 2 days ago by 38k • written 7.5 years ago by ▴ 960
4
votes
0
replies
2.6k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 2 days ago by 38k • written 7.5 years ago by ★ 2.2k
10
votes
5
replies
2.6k
views
Biopython or Bioperl help
next-gen RNA-Seq biopython sequence
updated 1 day ago by 38k • written 7.4 years ago by ▴ 40
0
votes
0
replies
2.5k
views
Job: Postdoctoral research fellow position at the forefront of digital health revolution, University of Helsinki, Finland
next-gen RNA-Seq alignment
updated 2 days ago by 38k • written 7.6 years ago by • 0
0
votes
1
reply
2.5k
views
How Do I Get A Phylop Input File?
phylop
updated 5 days ago by 38k • written 11.5 years ago by ▴ 100
1
vote
1
reply
2.5k
views
Looking For A Vcf File Produced By The Varscan Tool
varscan
updated 5 days ago by 38k • written 9.6 years ago by • 0
6
votes
6
replies
2.5k
views
Sites for Computer Aided Drug Designing
CADD Simulations in-silico Docking
written 8.3 years ago by ▴ 60
3
votes
4
replies
2.5k
views
Matrix Building
python matrix
updated 5 days ago by 38k • written 12.3 years ago by ▴ 50
0
votes
0
replies
2.5k
views
Job: Scientific Officer in Bioinformatics, The Chinese University of Hong Kong
next-gen
updated 2 days ago by 38k • written 7.6 years ago by • 0
1
vote
7
replies
2.4k
views
Forum: Bioinformatics & Virology or Immunology.
immunology virology
updated 1 day ago by 38k • written 7.4 years ago by • 0
0
votes
3
replies
2.4k
views
Error With Fastx_Clipper Tool To Remove Adapter.
fastq fastx_clipper
updated 5 days ago by 38k • written 9.0 years ago by ▴ 600
5
votes
5
replies
2.4k
views
how to change the header of input file
fasta awk sed
updated 5 days ago by 38k • written 8.9 years ago by ▴ 100
0
votes
2
replies
2.4k
views
Cytoscape- Reactome Fis- Error In Loading File
cytoscape reactome
updated 5 days ago by 38k • written 9.7 years ago by • 0
0
votes
2
replies
2.4k
views
can I perform gene ontology using microarray gene expression data?
microarray genome gene-ontology
updated 2 days ago by 38k • written 7.6 years ago by ▴ 10
10
votes
6
replies
2.4k
views
Replacing Dots In File
shell
updated 5 days ago by 38k • written 11.4 years ago by ▴ 40
2
votes
2
replies
2.3k
views
Bioperl Standaloneblastplus, Cleaning Up Thousands Of Temp Files
bioperl blast-plus
updated 5 days ago by 38k • written 9.8 years ago by ▴ 10
3
votes
1
reply
2.3k
views
Noncoding Rna Mapping
non-coding-RNA
updated 5 days ago by 38k • written 9.8 years ago by ▴ 200
0
votes
0
replies
2.3k
views
Job: Data scientist position in computational biology and high-performance/cloud computing, New York City
computational-biology machine-learning
updated 2 days ago by 38k • written 7.6 years ago by ▴ 190
3
votes
0
replies
2.3k
views
Job: Two positions in bioinformatics and machine learning at a start-up in Cambridge, UK
gene-expression R machine-learning
updated 2 days ago by 38k • written 7.5 years ago by ▴ 400
5
votes
4
replies
2.3k
views
strand specificity of TFBS
motif transcription-factor TFBS
updated 1 day ago by 38k • written 7.4 years ago by ▴ 80
3
votes
4
replies
2.2k
views
Converting A Microarray Dataset Into Fasta Files
microarray fasta
updated 5 days ago by 38k • written 11.5 years ago by ▴ 100
403 results • Page 2 of 9
Recent Votes
Answer: Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for
Answer: Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for
Answer: how can i filter a sam file from a paf file
Answer: Align miRNA library (small RNA-seq) without trimming
Answer: Snakemake workflow for trimmomatic
C: Adjust for covariates
Comment: syntax errors when running part3 all-against-all
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Recent Replies
Answer: Getting Intron Positions from Amino Acid Sequences by fafad046 • 0
Do you happen to know why sometimes my Entrez direct command gives no output at all? I installed Entrez direct using the commands listed…
Comment: Getting Intron Positions from Amino Acid Sequences by fafad046 • 0
Do you happen to know why sometimes my Entrez direct command gives no output at all? I installed Entrez direct using the commands listed o…
Comment: Diffbind dba.count doesn't give FRiP score by gyspace • 0
I found your email in https://bioinfotraining.bio.cam.ac.uk/staff/rory-stark-phd, is the email right? I sent a google drive link to you. If…
Comment: how can i filter a sam file from a paf file by colindaven 4.7k
Just save yourself a lot of pain and learn to filter the sam/bam file efficiently. It is much more of a widespread standard than PAF.
Comment: Snakemake workflow for trimmomatic by GenoMax 127k
Please accept this answer (green check mark) to provide closure to this thread.
Comment: syntax errors when running part3 all-against-all by Sofia • 0
When I started with the gz all-vs-all files for CHICK and ANOCA and started oma, everything ran fine, I got output. Then, in the same direc…
Comment: Quality control of Chip-seq data (NRF and PCB) by michelafrancesconi9 • 0
Can you explain me better? Because for the NRF I do : a) samtools view -c .bam b)samtools view -c -F 260 .bam then b/a and as a bam fi…
Comment: pyCirclize - Circular visualization in Python by karenkvn ▴ 40
Thank you for responding so quickly - this works perfectly!
Comment: pyCirclize - Circular visualization in Python by moshi ▴ 110
Please install Biopython with v1.80 or higher. If biopython>=1.80, there should be no errors.
Comment: Gene family classification using RNA-seq data by Dion • 0
well, I have been given the task to retrieve gene family/categorization. I found sveral papers on family classification, but no actual pack…
Comment: pyCirclize - Circular visualization in Python by karenkvn ▴ 40
Thank you for this wonderful programme! I am plotting a bacterial chromosome and find that when I plot the NC_000913 chromosome using the e…
Comment: SKAT in R by Eliza ▴ 20
@acvill can you sujjest maybe pther tools , methods for this ? ( also for every SNP i have data how many patients had the hetro/homozygous…
Comment: TCGA-BRCA tissue and RNAseq problem by pinheirofabiano ▴ 10
Go to https://portal.gdc.cancer.gov > Exploration > select TCGA and the cancer type you want > select case ID to download the files and hav…
Comment: Snakemake workflow for trimmomatic by antoine.fauchois92 • 0
Thank you very much for your reply ! It's working now !
Comment: Dependent p values by Eliza ▴ 20
@lchart I'm sorry for asking another of questions but I'm new to this field , can you please explain a little more how to use SKAT , saige…
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