updated 5 days ago by
Jeremy Leipzig
21k
•
written 6 days ago by
JourneyToAbyss
▴
210
3
votes
2
replies
212
views
3
votes
3
replies
905
views
3
votes
4
replies
222
views
3
votes
4
replies
4.7k
views
3
votes
6
replies
2.0k
views
3
votes
10
replies
1.7k
views
6 follow
updated 2 days ago by
biofalconch
▴
580
•
written 10 months ago by
MYousry
▴
20
3
votes
0
replies
676
views
updated 1 day ago by
Ram
39k
•
written 3.5 years ago by
carlopecoraro2
★
2.3k
3
votes
4
replies
298
views
3
votes
1
reply
731
views
updated 1 day ago by
Ram
39k
•
written 3.5 years ago by
be.bogaert.cedric
▴
20
3
votes
0
replies
881
views
3
votes
0
replies
1.4k
views
updated 4 days ago by
Ram
39k
•
written 3.8 years ago by
anarechania
▴
30
2
votes
4
replies
811
views
2
votes
5
replies
1.6k
views
2
votes
2
replies
163
views
updated 2 days ago by
shenwei356
8.1k
•
written 2 days ago by
Sapphire
•
0
2
votes
4
replies
1.3k
views
updated 1 hour ago by
Ram
39k
•
written 3.3 years ago by
mario.red8976
▴
110
2
votes
0
replies
1.2k
views
updated 1 hour ago by
Ram
39k
•
written 3.3 years ago by
dan.brewer
▴
120
2
votes
7
replies
514
views
updated 4 days ago by
Vincent Laufer
★
2.9k
•
written 5 days ago by
Alexander
▴
70
2
votes
1
reply
169
views
updated 1 day ago by
colindaven
4.9k
•
written 1 day ago by
ivazirabad
▴
20
2
votes
3
replies
469
views
updated 5 days ago by
rfran010
▴
170
•
written 26 days ago by
weimichelles
•
0
2
votes
0
replies
757
views
updated 2 days ago by
Ram
39k
•
written 3.7 years ago by
carlopecoraro2
★
2.3k
2
votes
3
replies
1.2k
views
2
votes
0
replies
2.6k
views
updated 4 days ago by
Ram
39k
•
written 3.7 years ago by
Christophe Dessimoz
▴
740
2
votes
0
replies
777
views
updated 1 hour ago by
Ram
39k
•
written 3.3 years ago by
mazumder.mohit
▴
20
2
votes
2
replies
160
views
2 days ago by
Dan
▴
120
2
votes
2
replies
191
views
2
votes
2
replies
275
views
2
votes
2
replies
1.2k
views
2
votes
0
replies
588
views
updated 2 hours ago by
Ram
39k
•
written 3.3 years ago by
carlopecoraro2
★
2.3k
2
votes
0
replies
661
views
updated 1 day ago by
Ram
39k
•
written 3.5 years ago by
carlopecoraro2
★
2.3k
2
votes
0
replies
135
views
2
votes
2
replies
185
views
3 days ago by
rhonddaskl
•
0
2
votes
0
replies
769
views
2
votes
0
replies
777
views
updated 6 days ago by
Ram
39k
•
written 3.9 years ago by
carlopecoraro2
★
2.3k
2
votes
3
replies
221
views
2
votes
0
replies
785
views
updated 5 days ago by
Ram
39k
•
written 3.8 years ago by
carlopecoraro2
★
2.3k
2
votes
0
replies
677
views
updated 3 hours ago by
Ram
39k
•
written 3.4 years ago by
Devon Ryan
103k
2
votes
6
replies
646
views
2
votes
4
replies
823
views
2
votes
0
replies
859
views
updated 1 hour ago by
Ram
39k
•
written 3.3 years ago by
Charles Warden
8.2k
2
votes
0
replies
1.4k
views
updated 1 hour ago by
Ram
39k
•
written 3.3 years ago by
Obi Griffith
20k
2
votes
1
reply
151
views
updated 2 days ago by
rpolicastro
12k
•
written 2 days ago by
Kermit
▴
80
2
votes
3
replies
342
views
2
votes
1
reply
975
views
2
votes
2
replies
277
views
updated 4 days ago by
Hamid Ghaedi
2.9k
•
written 5 days ago by
Andy
▴
50
2
votes
2
replies
574
views
2
votes
0
replies
823
views
updated 6 days ago by
Ram
39k
•
written 4.0 years ago by
carlopecoraro2
★
2.3k
2
votes
4
replies
239
views
2
votes
4
replies
262
views
updated 1 day ago by
Alexander
▴
70
•
written 1 day ago by
DanielEB_fisk
▴
10
2
votes
4
replies
323
views
2
votes
0
replies
876
views
updated 1 day ago by
Ram
39k
•
written 3.6 years ago by
stephens_sarah
▴
150
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
Brazil/Recife, 2 minutes ago
Germany, 2 minutes ago
United States, 2 minutes ago
United States, 3 minutes ago
Bologna, 3 minutes ago
India, 4 minutes ago
Recent Awards •
All
Popular Question to
Payal
▴
140
Scholar to
Rory Stark
★
1.8k
Popular Question to
v.berriosfarias
▴
100
Popular Question to
Denis
▴
270
Popular Question to
chi.delta
▴
40
Recent Replies
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data.
by
Yeeshouw
•
0
I see, I believe I was running an older version or have missed the option, I have updated to v2.10.5 and can see this option now.
Thank you…
Comment: Saving results from yeastgenome.org blastp search
by
GenoMax
130k
Looks like yeastgenome site does not provide a way to export or save the results in any other format. You could do the search over at NCBI …
Answer: Differences in GTF files hg19 and hg38
by
GenoMax
130k
Not sure where you got your GTF for GRCh38 from but [**one from GENCODE**][1] has the level info you are looking for.
chr1 HAVANA…
Comment: Is PanCan data microarray or rna-seq
by
GenoMax
130k
This particular example ("GeneChip") is an array. Early TCGA samples may have been done using arrays and later sequenced. Appears to be thi…
Comment: ChatGPT optimized for bioinformatics questions
by
Sasha
▴
280
Hoping to add functionality around this. Stay tuned. Big problem for our space that needs to be resolved.
Comment: Is PanCan data microarray or rna-seq
by
solarchan7
•
0
Hi, so this [paper](https://www.nature.com/articles/s41598-019-45165-4) uses the TCGA dataset and in the supplementary information, it ment…
Comment: counts matrix should be numeric, currently it has mode: character when using a c
by
Darked89
4.4k
Since the input file is named `normalized.csv` and the values look like floats most likely the counts have been already normalized somehow.
Comment: Embryo transcriptome
by
Basti
★
1.6k
https://www.ebi.ac.uk/ena/browser/view/PRJEB11202
https://www.ebi.ac.uk/ena/browser/view/PRJNA153427
Comment: ChatGPT optimized for bioinformatics questions
by
ATpoint
72k
How is it trained on PubMed/papers? One major drawback of ChatGPT is that it wildly makes up papers that do not even exist but with great c…
Answer: sgRNA design
by
ATpoint
72k
gRNAs are single-stranded and by this they have a strand-specificity (depends where the PAM is) and that gives them an orientation.
Answer: counts matrix should be numeric, currently it has mode: character when using a c
by
ATpoint
72k
You have commas as decimal delimiters which interpreted as text. Just replace by dot and make numeric:
```r
d <- data.frame(A=c("1,2", "3,…
Comment: snps from empty well, Illumina Sequencing
by
GenoMax
130k
> I receive illumina sequencing files with 96 wells, our lab leaves one
> well empty. When I process the files with a SNP calling pipeline …
Answer: counts matrix should be numeric, currently it has mode: character when using a c
by
Darked89
4.4k
You can try:
counts_data <- read.csv2("normalized.csv", header = TRUE)
But as far as I know DESeq2 requires raw counts as inpu…
Traffic: 2530 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6