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Comment: doubts about SNAP, bioinformatic tools for gene prediction
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Hello https://www.biostars.org/u/110969/,
Welcome to the forum!
Please use the formatting bar (especially the `code` option) to present y…
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The size is 24661059 and I waited aroun 10 mins
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It is unclear to me what the question is. Do you want gene-level or transcript-level analysis? From what I know gene level analysis does no…
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Unfortunately, I have no experience whatsoever with yeast or GRN, but I recall [this article by de Boer et al.][1] that might be helpful. I…
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it runs for a very long time, i wanted to know whether there's some shorter-running alternative
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what's wrong with this tool ?
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duplicate of your previous question : https://www.biostars.org/p/9528211/
> I used first samtools stats file.bam | grep "average length" b…
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Your question title doesn't fit properly the question body: please fix it.
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Thanks and yes I had tried that but failed. I used the --const-fid (converts sample IDs to within-family IDs while setting all family IDs t…
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It is the sum of counts for that cell, so basically if a given cell has a given column in the count matrix it is the colSum of that column.
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Have a look at `Clustered_DotPlot` from `scCustomize`.
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It won't work because minimap2 aligns against a large reference sequence. What I want to do is to align each read in .fastq files against s…
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Hi Abhishek,
For miRNA, first I predicted novel miRNA by miRDP2 and then aligning clean reads over it to get count file. 1>made database …
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Very weird question, but ....
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Thank you. Let me try.
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