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Limit : this year
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1,000 results • Page
2 of 20
Sort: Rank
Rank
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Votes
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0
votes
2
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211
views
lncTar
LncRNA
lncTar
maize
updated 2 days ago by
Ram
38k • written 2 days ago by
Amrendra
• 0
1
vote
3
replies
996
views
LncTar error
LncRNA
LncTar
mRNA
updated 2 days ago by
Ram
38k • written 2.1 years ago by
kuntalasb
▴ 10
1
vote
0
replies
147
views
News:
NCBI's IgBLAST version 1.21.0 is now available
IgBLAST
BLAST
T-Cell
NCBI
receptors
updated 2 days ago by
GenoMax
127k • written 2 days ago by
PeterC_NCBI
▴ 210
0
votes
2
replies
243
views
chloroplast genome gaps
genome
gaps
chloroplast
2 days ago by
ugur
• 0
0
votes
0
replies
137
views
Using Lastz aligner
aligner
genome
Lastz
updated 2 days ago by
GenoMax
127k • written 2 days ago by
Diego
▴ 90
1
vote
0
replies
129
views
How to calculate Exon-Intron junction perbase coverage?
RNA-Seq
bedtools
2 days ago by
barrypraveen
▴ 110
7
votes
9
replies
547
views
6 follow
How to find promoter sequence of a gene?
promoter
updated 2 days ago by
Getting there
▴ 100 • written 4 days ago by
sunyeping
▴ 60
0
votes
0
replies
138
views
Extract/include transcript list from GAGE analysis result
RNAseq
GAGE
2 days ago by
farzaneafzali
▴ 70
3
votes
4
replies
255
views
How to demultiplex single end - dual index run - NextSeq 500
sequencing
bcl2fastq
rna-seq
2 days ago by
Apex92
▴ 260
0
votes
0
replies
125
views
Bam-readcount-installation error
bam-readcount
updated 2 days ago by
Pierre Lindenbaum
153k • written 2 days ago by
shreshta2396
• 0
1
vote
1
reply
196
views
LIMMA calculates identical adj.P.Val for different proteins from proteomics
P-value
proteomic
data
LIMMA
q-value
adjusted
proteomics
analysis
updated 2 days ago by
ATpoint
70k • written 2 days ago by
Martin
• 0
0
votes
0
replies
120
views
issue changing k values on SOAPdenovo2
novo
de
assembly
2 days ago by
parrasevilla.bioinfo
• 0
1
vote
5
replies
394
views
query UCSC db for CDS coordinates (Gencode)
CDS
mysql
UCSC
bed
updated 2 days ago by
GenoMax
127k • written 11 days ago by
bitpir
▴ 210
0
votes
1
reply
207
views
normalized score for SpatialFeaturePlot
Spatial
Transcriptome
normalization
integration
Seurat
updated 2 days ago by
jv
★ 1.0k • written 2 days ago by
Omics data mining
▴ 210
0
votes
2
replies
399
views
Calculation method of RMSMappingQuality
NGS
bam
samtools
vcf
1 day ago by
zhangfish
▴ 40
1
vote
3
replies
331
views
SKAT in R
pvalue
skat
snp
15 hours ago by
Eliza
▴ 20
2
votes
1
reply
208
views
Using STAR for RNA seq-alignment.
Sequence
Single
Alignment
cell
updated 2 days ago by
GenoMax
127k • written 3 days ago by
pradeepbk450
• 0
1
vote
2
replies
260
views
in an RNA-seq experiment, what threshold would you use to define a set of expressed or active genes in a cell line?
RNA-seq
updated 2 days ago by
i.sudbery
16k • written 3 days ago by
rls_08
▴ 40
0
votes
0
replies
173
views
how to look at interaction between SNP and gene
interacting
Hi-C
loop
SNP
Gene
3 days ago by
rheab1230
▴ 140
0
votes
2
replies
208
views
No Passing Variants GATK
calling
variantcalling
GATK
variant
3 days ago by
brandnewatthis
• 0
1
vote
1
reply
209
views
Make a S4/S3 object with my clinical data
bioconductor
seurat
R
updated 3 days ago by
ATpoint
70k • written 3 days ago by
Maria17
▴ 10
1
vote
1
reply
245
views
BCFtools for somatic vs. germline variant calling
germline-variant
bcftools
somatic-variant
RNA-seq
updated 3 days ago by
Ram
38k • written 4 days ago by
rebeliscu
▴ 50
0
votes
0
replies
208
views
How to calculate the correlation between the expression levels of two genes (features) with Seurat package in scRNA-seq data?
scRNA-seq
Seurat
2 days ago by
sunyeping
▴ 60
0
votes
1
reply
176
views
Gaia CNV error TCGA data
CNV
GAIA
TCGA
updated 3 days ago by
Ram
38k • written 3 days ago by
s.lueong
• 0
0
votes
0
replies
142
views
News:
ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j
cypher
graph
knowledge
3 days ago by
Stephen
• 0
1
vote
1
reply
162
views
How to get gene from PSIBLAST resuts
blast
homologous
psiblast
updated 3 days ago by
lieven.sterck
14k • written 3 days ago by
Tom
• 0
1
vote
2
replies
208
views
How to analize multiple letters codes in COG IDs?
COG
3 days ago by
Constanza
• 0
0
votes
0
replies
123
views
News:
Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine
declmed
declarative
icfp
precision
3 days ago by
Stephen
• 0
1
vote
1
reply
142
views
How to generate GFF/GTF file from cDNA transcipts FASTA file?
gff3
gtf
transcript
cDNA
updated 3 days ago by
Pierre Lindenbaum
153k • written 3 days ago by
BioinfoBee
• 0
0
votes
0
replies
131
views
BULK mRNA-seq with UMIs. Does it make sense to run bedtools genomecov?
RNAseq
gene-length
normalization
3 days ago by
txema.heredia
▴ 70
1
vote
3
replies
284
views
ClusterProfiler enrichKEGG – remove organism name in plots?
KEGG
ggplot2
enrichKEGG
ClusterProfiler
updated 3 days ago by
jv
★ 1.0k • written 5 days ago by
Sian
• 0
0
votes
0
replies
115
views
Browsing MGnify IDs and clusters
metagenomics
mgnify
ebi
3 days ago by
biomarco
▴ 20
0
votes
0
replies
118
views
Deeptools clustering differs when clustering sample as standalone and together with other samples
deepTools
3 days ago by
jordi.planells
▴ 450
2
votes
5
replies
288
views
ExomeDepth installation error
ExomeDepth
Exome
CNV
updated 3 days ago by
jared.andrews07
★ 14k • written 3 days ago by
Medha
• 0
2
votes
6
replies
312
views
bioinformatics problems solved by graphs data structure
Graph
algorithm
data-structure
updated 3 days ago by
Ram
38k • written 3 days ago by
abdelmalek.benmeziane
• 0
2
votes
3
replies
171
views
Reduce poly-N regions longer than 200bp back to 200bp in a reference genome FASTA
FASTA
poly-N
3 days ago by
William
★ 5.2k
0
votes
1
reply
137
views
Embedded stop codon in translated nucleotide sequences in DAMBE
DAMBE
stop-codon
updated 3 days ago by
Mensur Dlakic
★ 23k • written 3 days ago by
Fathima
• 0
3
votes
5
replies
357
views
PCA in gene expression
PCA
TCGA
3 days ago by
ali
• 0
2
votes
1
reply
285
views
How to derive conditional maximum likelihood of the sum of independent negative binomial variables?
limma
voom
biostatistics
3 days ago by
Dan
▴ 90
3
votes
3
replies
193
views
What means this Error when running a script in python??
python3
yaml
conda
linux
python
updated 3 days ago by
Ram
38k • written 3 days ago by
Ant
• 0
4
votes
3
replies
285
views
Informations for gene summary are missing in eutils api of NCBI?
NCBI
esummary
eutils
Gene
updated 3 days ago by
MirianT_NCBI
▴ 460 • written 4 days ago by
dare_devil
★ 1.7k
0
votes
1
reply
148
views
ImportError: Bio.Alphabet has been removed from Biopython
Biopython
updated 3 days ago by
Wayne
★ 1.7k • written 3 days ago by
Neel
▴ 10
4
votes
4
replies
201
views
Differences between BioMart and Ensembl site
ensembl
biomart
transcripts
refseq
3 days ago by
jpuntomarcos
▴ 50
0
votes
1
reply
273
views
Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for diagnostic purpose
nanopore
updated 3 days ago by
colindaven
4.6k • written 19 days ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
109
views
Can't initialise orthomcl schema at orthomclInstallschema step.
mysql
perl
orthomcl
3 days ago by
shivankparashar
• 0
0
votes
1
reply
158
views
Clinvar Mapping
gene
Clinvar
Mapping
updated 4 days ago by
Pierre Lindenbaum
153k • written 4 days ago by
Shweta
• 0
3
votes
2
replies
210
views
correlations in R
cor
R
4 days ago by
rene.j.erhardt
▴ 20
0
votes
1
reply
745
views
Astalavista landscape AS gtf file output
rna-seq
Astalavista
updated 4 days ago by
xizengde
• 0 • written 4.7 years ago by
dina.hesham139
▴ 160
1
vote
2
replies
215
views
Weird looking dispersion & MA plot?
deseq2
RNA-seq
updated 3 days ago by
Ram
38k • written 4 days ago by
Neha
• 0
3
votes
8
replies
2.9k
views
8 follow
Using AWS for Bioinformatics
unix
Cluster
updated 3 days ago by
4galaxy77
2.6k • written 16 months ago by
dk0319
▴ 40
1,000 results • Page
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A: circos plot gene expression by RNA-Seq
Create Interval List for Picard CollectRNASeqmetrics
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Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
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Answer: Hard clip fastq
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Comment: Installing rlang version 1.1.0
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Password: bQFDPMHbbT I want to install ExomeDepth, these dependencies were not getting installed on its own so I installed it before insta…
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The short answer is you can theoretically do this you just need to a) make your SNPs are two base-pairs in length (i.e. add 1 to the end) a…
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127k
If you simply want the reads to be compatible in length then do not adapter trim.
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@ATpoint, so no adapter trimming first? Just trim the raw fastq?
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If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
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70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
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★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
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