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0
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140
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68
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39k
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0
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written 4.7 years ago by
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113
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66
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36k
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134
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65
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Its not that we don't know which transcripts are poly-adenylated and which arn't - its just that that information is not encoded in the gen…
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DESeq2 automatically removes low expression genes, no?
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Well, all those SNPs are missing in the first individual (TA_AM_01_01_F3_CC0_M1_1) in the input (GT --> "./.") and they are imputed and gen…
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Returning to the original question， would you think it's strange that the depth of bulk DNA-seq data decreases too much after markduplicat…
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I am in the middle of writing a tutorial on this situation, where I observed upon analysis the number of differentially expressed genes cha…
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> will it influences the SNPs called by gatk HaplotypeCaller?
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All of those snps were in the original VCF, so they won't have gps, since only imputed markers would have GPs. can you show some imputed SN…
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If I forget to remove duplicates, will it influences the SNPs called by gatk HaplotypeCaller?
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Sure, the output looks like this, with GT, but no GP values:
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