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1,000 results • Page
3 of 20
Sort: Votes
Rank
Views
Votes
Replies
56
votes
19
replies
4.1k
views
9 follow
Forum:
How to apply for a job
resume
cover-letter
application
CV
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Emily
23k
56
votes
12
replies
12k
views
9 follow
What Are The Public Sql Servers For Bioinformatics ?
online-server
sql
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Pierre Lindenbaum
161k
54
votes
10
replies
22k
views
10 follow
Finding Common Motifs In Sequences
motif
updated 6 months ago by
Ram
43k • written 14.6 years ago by
Fabio
▴ 130
54
votes
15
replies
30k
views
10 follow
Where To Download Pam50 Gene Set?
cancer
annotation
classification
updated 9 months ago by
DareDevil
★ 4.3k • written 10.8 years ago by
user
▴ 940
54
votes
13
replies
10k
views
6 follow
Tool:
Bedtools: Analyzing Genomic Features
bedtools
updated 10 months ago by
Ram
43k • written 12.0 years ago by
Istvan Albert
100k
54
votes
17
replies
5.8k
views
8 follow
Is annotation of enhancers to nearest gene pointless?
enhancer
annotation
updated 11 months ago by
Ram
43k • written 6.9 years ago by
BioinfGuru
★ 1.7k
54
votes
7
replies
4.0k
views
6 follow
Tool:
Looking For People That Would Try A Custom Genome Viewer That I Wrote For Bioinformatics
genome-viewer
updated 10 months ago by
Ram
43k • written 10.9 years ago by
chbelhumeur2000
▴ 40
54
votes
12
replies
28k
views
12 follow
Out Of Disk Space With Picard Tools ?
picard
updated 7 days ago by
kjngo
• 0 • written 12.0 years ago by
Gabriel R.
★ 2.9k
53
votes
13
replies
7.8k
views
9 follow
Has Enhancer And Transcription Factor Binding Site Prediction Already Been Made Redundant?
transcription-factor-binding-site
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Allpowerde
★ 1.3k
52
votes
8
replies
20k
views
6 follow
Fast Interval Intersection Methodologies
genomics
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Biostar User
★ 1.0k
52
votes
14
replies
40k
views
15 follow
Converting Bam To Fastq
next-gen-sequencing
fastq
updated 5 months ago by
Pierre Lindenbaum
161k • written 14.0 years ago by
Zach Stednick
▴ 660
52
votes
21
replies
49k
views
11 follow
Fastq Splitter For Paired End Reads
rna
updated 10 months ago by
Ram
43k • written 12.1 years ago by
Geparada
★ 1.5k
52
votes
8
replies
59k
views
7 follow
Subsampling Bam File With Samtools
bam
samtools
updated 3 months ago by
giulia.trauzzi
▴ 10 • written 10.8 years ago by
madbessoul
▴ 250
51
votes
25
replies
6.9k
views
10 follow
What Is Your Experience With Bioinformatics Webservices?
web-service
subjective
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Michael
54k
51
votes
6
replies
18k
views
Decoy In Reference Assembly
1000genomes
updated 11 months ago by
kmzhou4
• 0 • written 10.9 years ago by
Sangwoo Kim
▴ 420
50
votes
18
replies
36k
views
12 follow
ATAC-seq peak calling with MACS
atac-seq
macs
ChIP-Seq
peaks
updated 10 months ago by
Ram
43k • written 7.7 years ago by
igor
13k
50
votes
13
replies
57k
views
13 follow
Calculating TPM from featureCounts output
RNA-Seq
updated 7 months ago by
camillab.
▴ 160 • written 8.3 years ago by
nash.claire
▴ 490
50
votes
16
replies
14k
views
12 follow
Tool:
Omictools: A didactic directory for omic data analysis (NGS, microarray, PCR, MS, NMR)
pcr
software
ngs
updated 10 months ago by
Ram
43k • written 10.6 years ago by
arnaud.desfeux
▴ 450
49
votes
20
replies
2.0k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 3 months ago by
Michael Love
★ 2.6k • written 3 months ago by
Mensur Dlakic
★ 27k
49
votes
18
replies
15k
views
12 follow
What Phylogeny Viewing Software Do You Use?
software
phylogenetics
visualization
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Roderic Page
▴ 390
49
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 28 days ago by
Istvan Albert
100k • written 8.1 years ago by
Ram
43k
48
votes
18
replies
32k
views
10 follow
How To Get Promoter Sequences For Human Genes?
promoter
sequence
human
genome
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Yuri
★ 1.7k
48
votes
21
replies
5.1k
views
9 follow
What Online Gene-Centric Resources Do You Use?
gene
database
updated 5 months ago by
Ram
43k • written 14.0 years ago by
Andrew Su
4.9k
48
votes
14
replies
26k
views
8 follow
Gene Network Construction... Web Based Tool
gene-network
updated 10 months ago by
Ram
43k • written 12.9 years ago by
Dataminer
★ 2.8k
48
votes
24
replies
8.2k
views
14 follow
Tool:
Hera: A new tool for RNA-Seq analysis
kallisto
RNA-Seq
STAR
gene-fusion
updated 10 months ago by
Ram
43k • written 6.8 years ago by
sonpham
▴ 580
48
votes
9
replies
43k
views
10 follow
ClusterProfiler : What is GeneRatio and BgRatio?
clusterProfiler
updated 12 weeks ago by
Picasa
▴ 640 • written 7.5 years ago by
ZheFrench
▴ 570
48
votes
8
replies
6.7k
views
8 follow
How Far Does Bioinformatics Go?
meta
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Egon Willighagen
5.4k
47
votes
15
replies
16k
views
10 follow
DESeq2 compare all levels
differential-gene-expression
RNA-Seq
DESeq2
updated 5 weeks ago by
Bionaught
• 0 • written 5.8 years ago by
firestar
★ 1.6k
47
votes
30
replies
4.3k
views
10 follow
Forum:
Bioinformatics software distribution
software
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Petr Ponomarenko
★ 2.8k
47
votes
26
replies
4.1k
views
11 follow
Blog:
Evolution of Biostars
meta
Biostars
updated 8 months ago by
aldhairmedico
▴ 70 • written 5.2 years ago by
venu
7.1k
46
votes
18
replies
9.9k
views
8 follow
Tips To Build A Data Storage For Bioinformatics
data
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Jarretinha
3.4k
46
votes
13
replies
15k
views
13 follow
Tutorial:
Methylation Analysis Tutorial in R - Part 1
R
cancer
methylation
updated 6 weeks ago by
Konstantinos
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
46
votes
14
replies
27k
views
12 follow
Which Bioinformatics Tools Are Written In Python
python
updated 10 months ago by
Ram
43k • written 11.7 years ago by
Chen Sun
★ 1.1k
46
votes
16
replies
5.9k
views
12 follow
News:
Google announces DeepVariant
genome
deep-learning
google
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Hussain Ather
▴ 990
45
votes
9
replies
58k
views
FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
next-gen
RNA-Seq
single-cell
R
updated 8 months ago by
camillab.
▴ 160 • written 4.4 years ago by
Payal
▴ 160
45
votes
19
replies
2.8k
views
9 follow
Forum:
Where and how NGS techniques are heading for the next 5 years?
next-gen
NGS
updated 11 months ago by
Ram
43k • written 6.9 years ago by
lakhujanivijay
5.8k
44
votes
4
replies
20k
views
Best way to compare two samples in a VCF file
VCF
Variant
Genotype
Comparison
SNP
updated 8 months ago by
Ram
43k • written 7.4 years ago by
Matteo Schiavinato
★ 3.6k
44
votes
9
replies
5.4k
views
6 follow
How Much Do You Trust Geneontology Annotations?
gene-function
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
43
votes
28
replies
5.6k
views
13 follow
Post Your Prefered Bioinformatics Short Code
code
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Eric Normandeau
11k
43
votes
21
replies
5.4k
views
9 follow
Helping Biostar Grow
biostars
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Eric Normandeau
11k
43
votes
44
replies
5.7k
views
14 follow
Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinformatics stuff?
metagenomics
amplicon
macbook
Intel
MacOs
updated 6 months ago by
steve
★ 3.5k • written 6 months ago by
l.gallucci
▴ 10
43
votes
37
replies
2.5k
views
7 follow
Forum:
Checking the quality and reliability in bioinformatics
reproducibility
updated 11 months ago by
Ram
43k • written 6.5 years ago by
zizigolu
★ 4.3k
43
votes
12
replies
5.8k
views
11 follow
What Is The Best Way To Share Scripts Between Members Of A Lab?
general
subjective
updated 6 months ago by
Ram
43k • written 14.2 years ago by
Giovanni M Dall'Olio
28k
42
votes
16
replies
34k
views
14 follow
Generating consensus sequence from bam file
genome
samtools
bwa
fasta
updated 7 months ago by
jkbonfield
★ 1.2k • written 5.1 years ago by
chparada
▴ 70
42
votes
15
replies
12k
views
12 follow
Preferred Tools For Making Analysis Pipeline Flowchart ?
pipeline
updated 10 months ago by
Ram
43k • written 11.2 years ago by
VS
▴ 730
41
votes
27
replies
5.9k
views
8 follow
Forum:
Why bioinformaticians need to know programming languages?
Python
R
Programming
updated 11 months ago by
Ram
43k • written 6.9 years ago by
nilo
▴ 90
41
votes
13
replies
26k
views
13 follow
Gene Set Enrichment Analysis after DESeq2
RNA-Seq
DESeq2
geneontology
GSEA
updated 6 weeks ago by
CTLong
▴ 110 • written 6.5 years ago by
Sreeraj Thamban
▴ 290
40
votes
6
replies
15k
views
7 follow
Mapping Ensembl Gene IDs with dot suffix
ensembl
gene
biomart
bioconductor
R
updated 9 months ago by
zx8754
11k • written 6.1 years ago by
mk
▴ 290
40
votes
19
replies
9.6k
views
12 follow
Is There A Site Where Call For Papers And Conferences Are Listed In One Place?
papers
conference
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Brandstaetter
▴ 270
40
votes
35
replies
13k
views
10 follow
find positions of a short sequence in a genome
sequence
search
updated 8 months ago by
Mark
★ 1.5k • written 7.7 years ago by
igor
13k
1,000 results • Page
3 of 20
Recent Votes
Comment: Sequence read length shorter than flow cell specification
How to calculate reliable Ka/Ks or dN/dS ratio for genes of interest from VCF file
Detecting somatic variants in non-tumor tissue without normals
Answer: Sequence read length shorter than flow cell specification
Answer: Sequence read length shorter than flow cell specification
Comment: Why gatk VariantAnnotator required bam and coverage files
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
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ATpoint
82k
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zdiazmar
▴ 30
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hkarakurt
▴ 180
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bioinfo
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Recent Replies
Answer: Rare Disease Variant Pathway Analysis
by
LauferVA
4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification
by
swbarnes2
14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
Comment: Annovar using R package
by
DKA
▴ 40
Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
ATpoint
82k
Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
by
ATpoint
82k
I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
Comment: Why gatk VariantAnnotator required bam and coverage files
by
QX
• 0
thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
kilcdincer
▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
Comment: BLAST using both nucleotides and taxonomic local databases
by
GenoMax
141k
> I ask this as some BLAST command fields as scinames or sblastnames do not give any output with a classic nt BLAST If that information is…
Answer: BLAST using both nucleotides and taxonomic local databases
by
5heikki
11k
This has been discussed [many times][1] [1]: https://www.biostars.org/p/76551/
Answer: why renaming Idents in Seurat object doesn't work?
by
Bioinfotec
▴ 10
I think when you give indent to seuObj : ```r Idents(seuObj) <- 'RNA_snn_res.0.1' ``` You may wrongly assign other value to it such as `…
Answer: ScRNAseq-How to correctly choose cell type marker genes
by
Bioinfotec
▴ 10
In fact, there is no gold standard for cell type annotation. To achieve correct cell type classification, you can combine the two methos. F…
Answer: ScRNA data question
by
Bioinfotec
▴ 10
In violin plot, a dot represents a cell. Actually, the straight lines you see in your infected image just means these cells have the same e…
Comment: Sequence read length shorter than flow cell specification
by
GenoMax
141k
> the have sent data with different sequencing read lengths: 55bp pair ended and 80bp single ended If they sent data that is not what you…
Comment: How to know synonymous and non-synonymous SNPs from transcriptome sequencing
by
rohitsatyam102
▴ 850
I have some off-the-chart dN/dS values for few genes (>20) when using your script on VCF obtained from a 20K plasmodium genomes (pf7K). | …
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