Limit : this year
all time today this week this month this year
1,000 results • Page 4 of 20
Sort: Votes
Rank Views Votes Replies
68
votes
48
replies
7.1k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2
updated 23 days ago by 39k • written 5.9 years ago by 98k
67
votes
15
replies
32k
views
14 follow
Rna-Seq Pipeline
pipeline next-gen-sequencing rna rna-seq
updated 18 days ago by 39k • written 13.0 years ago by 24k
67
votes
6
replies
25k
views
7 follow
Tutorial: Rna-Seq Review Papers
RNA-seq papers
updated 3 months ago by 39k • written 10.8 years ago by 98k
67
votes
18
replies
70k
views
17 follow
Project For A Beginner Bioinformatics Student
project java
updated 10 months ago by 39k • written 11.6 years ago by ▴ 230
67
votes
21
replies
5.2k
views
8 follow
Forum: Meta: Markdown in Biostars (now enabled)
meta
11 weeks ago by Ram 39k
66
votes
6
replies
24k
views
8 follow
What Is A "Spot" In Sra Format
sra fastq format
updated 4 months ago by 39k • written 11.7 years ago by 4.1k
66
votes
19
replies
47k
views
17 follow
Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
fastq tools
updated 5 days ago by ▴ 10 • written 10.3 years ago by ★ 3.6k
66
votes
21
replies
5.8k
views
18 follow
Forum: Is there anyone who was a pure biologist?
next-gen
updated 3 months ago by 39k • written 9.1 years ago by ▴ 100
65
votes
27
replies
6.4k
views
14 follow
Forum: What is the reason for most software errors in Bioinformatics according to you?
software-error blast sequencing SNP R
updated 8 weeks ago by 39k • written 7.2 years ago by ▴ 110
65
votes
9
replies
48k
views
7 follow
Tutorial: Reference Assembly - Mapping Reads To A Reference Genome
reference samtools mapping bwa
updated 3 months ago by 39k • written 9.9 years ago by ★ 3.0k
65
votes
3
replies
274k
views
Understanding up and down regulated genes from LOG2 foldchange or foldchange
protein gene-expression RNA-Seq
updated 3 months ago by 39k • written 9.0 years ago by ▴ 960
65
votes
35
replies
19k
views
17 follow
Which Dna Compression Algorithms Are Actually Used?
dna
updated 9 months ago by 154k • written 12.0 years ago by ▴ 270
65
votes
26
replies
11k
views
11 follow
Tutorial: Generating consensus sequence from bam file
fasta consensus bam
updated 11 weeks ago by 39k • written 4.2 years ago by 16k
65
votes
17
replies
32k
views
12 follow
Transform a GTF file into a data frame in R
R RNA-Seq GTF
updated 3 months ago by 39k • written 5.7 years ago by ▴ 360
65
votes
26
replies
18k
views
13 follow
Forum: Macosx For Bioinformatics?
linux
updated 3 months ago by 39k • written 9.5 years ago by 11k
64
votes
24
replies
2.3k
views
12 follow
Forum: How much I must feel useless?
machine-learning Programming statistics
updated 10 days ago by 39k • written 4.7 years ago by ▴ 80
64
votes
8
replies
7.8k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 3 months ago by 39k • written 10.1 years ago by 20k
64
votes
26
replies
12k
views
7 follow
Tutorial: Parallel processing in R
biocparallel mclapply foreach R
updated 11 weeks ago by 39k • written 5.7 years ago by 85k
64
votes
29
replies
14k
views
15 follow
Forum: Fundamentals Of Designing Biological Databases?
database
updated 3 months ago by 39k • written 12.6 years ago by ▴ 130
64
votes
5
replies
6.8k
views
10 follow
Tutorial: Informatics of RNA-Seq.
next-gen RNA-Seq
updated 7 months ago by 39k • written 7.8 years ago by 12k
63
votes
9
replies
97k
views
10 follow
Blog: Gene expression units explained: RPM, RPKM, FPKM and TPM
gene-expression RNA-Seq
updated 3 months ago by 39k • written 5.7 years ago by ★ 2.1k
63
votes
27
replies
26k
views
18 follow
Data Too Big To Be Stored In Memory: Common Options
python
updated 3 months ago by 39k • written 10.5 years ago by ▴ 720
63
votes
28
replies
3.2k
views
11 follow
Forum: Bioinformatics analyses & errors: need for better post-publication tools?
next-gen RNA-Seq
updated 8 weeks ago by 39k • written 7.1 years ago by ★ 1.2k
63
votes
9
replies
3.6k
views
Forum: Should The "Post Closing" Option Exist? Vote Now!
meta
updated 3 months ago by 39k • written 10.0 years ago by 98k
63
votes
19
replies
20k
views
12 follow
What Ngs Read Simulators Are Available For Paired-End Data?
next-gen sequencing fastq simulation paired
updated 7 months ago by 39k • written 12.8 years ago by 12k
62
votes
14
replies
186k
views
9 follow
How To Deal With Duplicate Row Names Error In R
r
updated 5 weeks ago by 11k • written 10.3 years ago by ▴ 900
62
votes
22
replies
57k
views
16 follow
How To Convert Gencode Gtf Into Bed Format ?
gtf bed
updated 5 months ago by • 0 • written 10.6 years ago by ★ 1.5k
62
votes
24
replies
39k
views
12 follow
How to extract unique mapped results from Bowtie2 bam results?
alignment
updated 5 months ago by 39k • written 9.0 years ago by ▴ 170
62
votes
16
replies
32k
views
18 follow
Job: Bioinformatics Jobs You Can Do From Home?
python education
updated 3 months ago by 39k • written 12.7 years ago by ▴ 290
61
votes
14
replies
19k
views
13 follow
Why is Hadoop not used a lot in bio-informatics?
hadoop
updated 12 weeks ago by 39k • written 8.7 years ago by ★ 5.2k
61
votes
70
replies
11k
views
21 follow
Forum: Biostar 2.0 released
meta biostars
updated 3 months ago by 39k • written 9.1 years ago by 98k
61
votes
11
replies
14k
views
9 follow
Forum: Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 3 months ago by 39k • written 9.9 years ago by 19k
61
votes
29
replies
6.5k
views
14 follow
Best bioinfo one-liners?
linux
updated 4 months ago by 39k • written 8.1 years ago by 4.1k
61
votes
16
replies
6.5k
views
14 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 4 months ago by ★ 1.3k • written 2.6 years ago by 8.1k
60
votes
6
replies
9.0k
views
Tutorial: Minimum Standards For Bioinformatics Command Line Tools
command-line
updated 3 months ago by 39k • written 9.8 years ago by 9.6k
60
votes
52
replies
40k
views
23 follow
Tutorial: Creating Interactive Volcano Plots with R and Plot.ly
plotly R volcano-plot
updated 11 weeks ago by 39k • written 6.7 years ago by ★ 3.3k
60
votes
3
replies
32k
views
Paired-end reads - what is what?
RNA-Seq
updated 5 months ago by 39k • written 8.0 years ago by ▴ 220
60
votes
2
replies
7.0k
views
Tutorial: Table Of Contents To All Review Paper Compilations On Biostar
papers
updated 3 months ago by 39k • written 10.8 years ago by 98k
60
votes
17
replies
31k
views
16 follow
Scientific Names In Blast Output And Databases
blast blast+
updated 5 months ago by 39k • written 9.9 years ago by ★ 2.0k
60
votes
18
replies
3.3k
views
10 follow
Are Super User Style Questions Appropriate In Biostar?
meta biostars
updated 3 months ago by 39k • written 12.9 years ago by ▴ 460
60
votes
12
replies
35k
views
10 follow
Get chromosome sizes from fasta file
genome ucsc
updated 7 months ago by • 0 • written 7.4 years ago by ▴ 700
60
votes
17
replies
31k
views
7 follow
how to remove multiallelic from VCF
SNP
updated 3 months ago by 39k • written 8.1 years ago by ▴ 510
60
votes
14
replies
11k
views
14 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 3 months ago by 39k • written 6.2 years ago by 47k
60
votes
28
replies
7.3k
views
27 follow
Forum: Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 12 weeks ago by 39k • written 8.7 years ago by 98k
59
votes
15
replies
12k
views
Tutorial: Which human reference genome should I use?
assembly genome alignment
updated 10 days ago by 39k • written 4.7 years ago by 16k
59
votes
95
replies
15k
views
8 follow
How to extract the list of genes from TCGA CNV data
TCGA CNV genes
updated 4 months ago by ▴ 10 • written 5.1 years ago by ▴ 260
59
votes
36
replies
35k
views
27 follow
Pca From Vcf Files
pca genome vcf
updated 10 months ago by ▴ 40 • written 11.1 years ago by ▴ 820
59
votes
31
replies
3.7k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 7 weeks ago by 39k • written 6.4 years ago by 9.9k
59
votes
43
replies
18k
views
18 follow
Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
pbalign pacbio arrow smrt-limk
updated 11 weeks ago by 39k • written 5.7 years ago by ★ 1.4k
58
votes
19
replies
20k
views
11 follow
Current state-of-the-art for RNA-Seq gene / transcript expression quantification OR just the tools of preference
kallisto salmon bitseq RNA-Seq cufflinks
updated 8 months ago by 39k • written 7.7 years ago by ★ 1.3k
1,000 results • Page 4 of 20
Recent Votes
Answer: How to calculate TPM from featureCounts output
A: Problem regarding Software installation.
Answer: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
A: How To Predict Pseudogenes In A Genome
How To Predict Pseudogenes In A Genome
Recent Locations • All
United States, just now
UCLA, 1 minute ago
Cambridge, MA, 1 minute ago
Stony Brook University, NY, 2 minutes ago
NCBI, 3 minutes ago
Ethiopia, 3 minutes ago
United States, 4 minutes ago
Recent Awards • All
Teacher to antonioggsousa 2.8k
Teacher to Kevin Blighe 85k
Popular Question to bioinfo_ga ▴ 50
Popular Question to english.server ▴ 290
Teacher to Pierre Lindenbaum 154k
Voter to pilargmarch ▴ 100
Popular Question to anna ▴ 10
Recent Replies
Answer: Getting species names and taxa id from assembly accession number by MirianT_NCBI ▴ 580
Hi, As an alternative, you could use [NCBI Datasets][1] for this task. NCBI Datasets allows users to retrieve metadata reports in JSON or…
Comment: Optimum setting for local blastp for ~10K sequences by sodiumnitrate ▴ 20
Thank you for the info! It turned out that running all 10k at once is actually faster than running one or two at a time!
Answer: Installation of PPFinder by GenoMax 129k
Since the software is still [**listed on the Brent lab**][1] website your best bet would be to email the investigator and ask that they fix…
Comment: How to calculate TPM from featureCounts output by rpolicastro 12k
If you want to go that route, yes.
Comment: Difference between USCS exon coordinates and ensembl by ATpoint 72k
What did you download from UCSC? 1-off usually means one file is zero-based and the other 1-based. BED files from UCSC are 0-based, Ensembl…
Comment: Alignment of case vs. control from different origin by sativus • 0
Thank you kindly for the explanation, it is highly appreciated. I suppose i was a bit confused as you quite often see people validating the…
Answer: Gene enrichment analysis by nux ▴ 10
Hello. For this you have to select 'hyper' as your method and then provide a complete list of genes which both include the candidate and no…
Comment: CNNScoreVariants Error by bestone ▴ 10
Thank you for replying I updated it worked but it gives another Error A USER ERROR has occurred: Invalid argument ' -V'.
Comment: Impute haplotypes (ImputePipelinePlugin) execution error - PHG by jrodrigu • 0
Thank you so much. I made the suggested changes. However, I still have the same problem. Please check the new log file. https://github.c…
Comment: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
That's a comment, not an answer, please use `ADD COMMENT`.
Comment: Getting same value for start and end position, "DNA methylation" by bioinfo_ga ▴ 50
Are you working on bisulphite kind of data or chipseq ????
Answer: How to calculate TPM from featureCounts output by bioinfo_ga ▴ 50
hi , You can use a python package rnanorm [https://pypi.org/project/rnanorm/]. The input required are your read count values from feature …
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Hey, if you arelady have the barcodes, you could use samtools `samtools view -h -b -f CB:Z:TAAGAGATCCTATGTT > TAAGAGATCCTATGTT.bam` Hope…
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them: …
Comment: Make a BedGraph file by kirillkirilenko ▴ 10
It works, thank you!
Traffic: 2785 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6