updated 3 months ago by
Raony Guimarães
★
1.2k
•
written 12.5 years ago by
Jeremy Leipzig
21k
1.2k
votes
206
replies
52k
views
108 follow
762
votes
162
replies
123k
views
105 follow
updated 6 weeks ago by
Biostar
2.0k
•
written 6.8 years ago by
Istvan Albert
98k
361
votes
58
replies
64k
views
44 follow
written 13.6 years ago by
Istvan Albert
98k
360
votes
81
replies
140k
views
34 follow
327
votes
92
replies
226k
views
58 follow
updated 7 weeks ago by
kalavattam
▴
180
•
written 12.7 years ago by
Biomed
4.9k
298
votes
122
replies
28k
views
29 follow
290
votes
55
replies
15k
views
41 follow
288
votes
33
replies
99k
views
25 follow
updated 7 months ago by
Ram
40k
•
written 9.9 years ago by
Obi Griffith
20k
282
votes
39
replies
174k
views
29 follow
279
votes
69
replies
19k
views
23 follow
273
votes
29
replies
267k
views
25 follow
updated 10 months ago by
Ram
40k
•
written 10.9 years ago by
sohadb1357
▴
630
262
votes
48
replies
21k
views
37 follow
updated 7 months ago by
Lars
★
1.0k
•
written 8.4 years ago by
Deepak Tanwar
★
4.2k
251
votes
36
replies
32k
views
27 follow
updated 6 months ago by
Ram
40k
•
written 13.4 years ago by
Pierre Lindenbaum
157k
244
votes
36
replies
8.5k
views
32 follow
updated 5 months ago by
Ram
40k
•
written 7.4 years ago by
Shicheng Guo
★
9.3k
238
votes
176
replies
88k
views
73 follow
229
votes
38
replies
140k
views
29 follow
updated 3 months ago by
Ram
40k
•
written 10.6 years ago by
Malachi Griffith
19k
206
votes
58
replies
39k
views
31 follow
203
votes
41
replies
24k
views
20 follow
197
votes
27
replies
32k
views
20 follow
Forum:
Bioinformatics Cartoon
updated 11 weeks ago by
Ram
40k
•
written 11.7 years ago by
Maxime Lamontagne
★
2.3k
197
votes
21
replies
171k
views
12 follow
updated 10 months ago by
Istvan Albert
98k
•
written 12.9 years ago by
Andrea_Bio
★
2.8k
196
votes
44
replies
69k
views
33 follow
updated 8 months ago by
Ram
40k
•
written 11.0 years ago by
Obi Griffith
20k
188
votes
50
replies
70k
views
41 follow
updated 12 months ago by
Ram
40k
•
written 12.9 years ago by
Zhangleisdau
▴
340
188
votes
47
replies
1.7k
views
16 follow
updated 5 months ago by
Ram
40k
•
written 7.4 years ago by
Bioinfexperts
▴
190
171
votes
26
replies
7.3k
views
12 follow
updated 7 months ago by
Ram
40k
•
written 12.6 years ago by
Andra Waagmeester
3.2k
170
votes
41
replies
91k
views
27 follow
170
votes
43
replies
17k
views
25 follow
updated 5 months ago by
zx8754
11k
•
written 10.5 years ago by
Istvan Albert
98k
162
votes
64
replies
80k
views
39 follow
160
votes
22
replies
17k
views
19 follow
156
votes
24
replies
60k
views
19 follow
updated 3 months ago by
Ram
40k
•
written 10.6 years ago by
Nicolas Rosewick
10k
151
votes
39
replies
23k
views
20 follow
Forum:
A Farewell To Bioinformatics
updated 7 months ago by
Ram
40k
•
written 10.7 years ago by
Martin A Hansen
3.0k
149
votes
35
replies
60k
views
33 follow
Tutorial:
Tools For Metagenomic Data Analysis
146
votes
70
replies
46k
views
20 follow
updated 29 days ago by
Raheleh
▴
260
•
written 5.8 years ago by
Kevin Blighe
86k
146
votes
31
replies
131k
views
26 follow
updated 8 weeks ago by
Ram
40k
•
written 11.6 years ago by
Anima Mundi
★
2.9k
146
votes
34
replies
53k
views
17 follow
145
votes
56
replies
7.9k
views
17 follow
updated 7 months ago by
Ram
40k
•
written 10.5 years ago by
Istvan Albert
98k
144
votes
62
replies
10k
views
23 follow
138
votes
42
replies
21k
views
22 follow
136
votes
26
replies
24k
views
14 follow
updated 7 months ago by
Ram
40k
•
written 11.7 years ago by
Brett Thomas
▴
300
135
votes
18
replies
162k
views
16 follow
updated 9 months ago by
katieostrouchov
▴
20
•
written 9.8 years ago by
timjoncooper
▴
320
134
votes
65
replies
4.6k
views
11 follow
updated 3 months ago by
Ram
40k
•
written 3.8 years ago by
sviatoslav.kendall
▴
880
134
votes
33
replies
59k
views
19 follow
132
votes
123
replies
33k
views
23 follow
Tutorial:
Survival analysis with gene expression
updated 6 months ago by
1769mkc
★
1.1k
•
written 4.9 years ago by
Kevin Blighe
86k
131
votes
22
replies
56k
views
15 follow
updated 3 months ago by
Kevin Blighe
86k
•
written 5.9 years ago by
Mike
★
1.9k
129
votes
38
replies
6.7k
views
21 follow
updated 3 months ago by
Ram
40k
•
written 4.5 years ago by
Istvan Albert
98k
128
votes
44
replies
30k
views
16 follow
128
votes
83
replies
11k
views
8 follow
Tool:
Lossless ALAPY Fastq Compressor (now for MacOS X with 10-20% improved speed and compression ratio)
updated 3 months ago by
Ram
40k
•
written 6.5 years ago by
Petr Ponomarenko
★
2.7k
125
votes
46
replies
46k
views
21 follow
124
votes
13
replies
165k
views
13 follow
122
votes
42
replies
9.4k
views
21 follow
updated 7 months ago by
Ram
40k
•
written 10.8 years ago by
Istvan Albert
98k
121
votes
44
replies
20k
views
21 follow
updated 7 months ago by
Ram
40k
•
written 13.3 years ago by
Madelaine Gogol
5.3k
Recent Votes
Recent Locations •
All
Germany, just now
Wano, just now
Poland, 2 minutes ago
China, 4 minutes ago
Bologna, 7 minutes ago
Tel Aviv, 9 minutes ago
EMBL Heidelberg, Germany, 11 minutes ago
Recent Awards •
All
Popular Question to
bharata1803
▴
550
Scholar to
Mensur Dlakic
★
25k
Popular Question to
morovatunc
▴
550
Popular Question to
fi1d18
★
4.2k
Popular Question to
julianneradford
▴
20
Recent Replies
Answer: Running Rockhopper from a command-line
by
langziv
▴
50
I managed to resolve the issue by passing absolute paths instead of relative ones.
Comment: Which function is best for pathway analysis?
by
luffy
▴
50
@chris Please look into @Hamid Ghaedi's well documented [post][1] on ORA and GSEA, Or [this][2] documentation. Hope this helps.
[1]: ht…
Comment: Bacterial Pangenome Analysis
by
kirankumareripogu
▴
10
Hi @liorglic,
Thank you for your prompt response.
I totally agree with you that different blastp cuttoffs provide different results and…
Answer: Fetch Fastq files directly for SRA data
by
Rob
6.2k
What is the accession for the project? Many — though not all — of the projects present in the NCBI SRA are also hosted in the European Nuc…
Comment: Dataset's name in BioMart for S. pombe
by
YUYANG.OON
•
0
Works with `useMart(biomart="fungi_mart", dataset="spombe_eg_gene", host="https://fungi.ensembl.org")`
Comment: Bug of vg surject
by
Jordan M Eizenga
▴
360
This is still hard to interpret without the commands. What would help is if you literally copied the full UNIX commands along with their re…
Comment: Which function is best for pathway analysis?
by
Chris
▴
180
Thank you for your reply! Do you have code that I and others can implement? I am not sure how to customize the gmt file from my differentia…
Comment: Bug of vg surject
by
Qi
•
0
Thanks your reply!
my resulte show below:
5x_pan_sv.bam 1347587601 #converted from gam to bam F1 indel=0.830392 snp=0.932511
5…
Comment: Bug of vg surject
by
Jordan M Eizenga
▴
360
It might help us to diagnose the problem if you included the exact commands that you used and showed the results that you are concerned abo…
Answer: Which function is best for pathway analysis?
by
Yogi
▴
20
Few things to mention.
Pathway Enrichment Analysis can be split into two categories.
1. Functional Class Scoring Methods
2. Overrepr…
Answer: identify DEGs across all conditions and per specific conditions
by
Yogi
▴
20
Couple of things.
(Feel free to correct if I'm misunderstanding).
"DESeq2" is meant for 1v1 comparisons.
If you're trying to compar…
Comment: Hisat2 index and alignment question
by
Istvan Albert
98k
yes correct you have to pass the full prefix and not the directory
Comment: Low Alignment rate
by
dsull
★
4.7k
Wow! Didn't realize the repeat-masked file could have such a large influence on alignment. Very good to know -- I guess I'll need to dive i…
Comment: Troubles launch IGV on Linux(Debian)
by
morovatunc
▴
550
Disclaimer: My comment could be totally unrelated. I would give these a try if you have noone comment/answer your problem.
I have had this…
Comment: How to check RNAseq support for annotated genes?
by
Michael
53k
> I tried it using STAR to map the transcript to the annotation gtf file
That is not what STAR is for. STAR is for aligning short reads in…
Traffic: 1352 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6