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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
139
views
inquiry related to same SNP for a gene across for two tissues
snp
relation
tissue
genetics
gene
4 days ago by
rheab1230
▴ 140
4
votes
7
replies
498
views
Calculate RPKM
RPKM
12 hours ago by
Chris
▴ 70
0
votes
5
replies
317
views
install seurat 4.0.3
Seurat
23 hours ago by
Andy
▴ 30
0
votes
0
replies
113
views
chia-pet tutorial
snp
gene
chia-pet
4 days ago by
rheab1230
▴ 140
2
votes
4
replies
325
views
Big BCV (Biological Coefficient of Variation) - no sense to continue the analysis of differential gene expression?
BCV
differential
RNA-seq
EdgeR
design
3 days ago by
Ann
▴ 10
0
votes
2
replies
186
views
query UCSC db for CDS coordinates (Gencode)
CDS
mysql
UCSC
bed
updated 4 days ago by
Pierre Lindenbaum
153k • written 4 days ago by
bitpir
▴ 210
1
vote
1
reply
180
views
Controlling for FDR in 450k methylation microarray data
minfi
methylation
450k
limma
epigenetics
updated 4 days ago by
LChart
2.1k • written 4 days ago by
Edward E-B
• 0
2
votes
1
reply
182
views
Choosing the correct shrinkage type
DEseq2
apeglm
lfcShrink
updated 4 days ago by
LChart
2.1k • written 4 days ago by
Chiara
▴ 10
0
votes
5
replies
338
views
How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV
VCF
Genotype
updated 4 days ago by
cmdcolin
★ 2.9k • written 4 days ago by
kk.mahsa
▴ 140
1
vote
1
reply
211
views
How do I convert GUI operations to CUI operations in pymol?
pymol
pdb
updated 4 days ago by
Wayne
★ 1.6k • written 5 days ago by
FT
▴ 10
0
votes
0
replies
128
views
DESeq2 for time series and control-treated groups
log2foldchange
DESeq2
4 days ago by
t.ru
• 0
0
votes
6
replies
261
views
collapsePathways function throwing error
GSEA
fgsea
R
updated 4 days ago by
alserg
▴ 830 • written 4 days ago by
Pac314
▴ 10
2
votes
3
replies
243
views
mRNA Seq
NGS
updated 3 days ago by
Ram
38k • written 4 days ago by
Yaseen
▴ 10
0
votes
1
reply
233
views
How do I compare evolutionary estimates between two sequence groups in codeML?
codeML
updated 4 days ago by
shelkmike
▴ 920 • written 7 days ago by
codoncity
• 0
0
votes
0
replies
112
views
Adding MBC/UMI RX tag to read name
umi
4 days ago by
Christian
▴ 20
1
vote
7
replies
234
views
error bbduk
linux
bbduk
java
updated 4 days ago by
lieven.sterck
14k • written 4 days ago by
Kárita
• 0
42
votes
15
replies
15k
views
13 follow
How To Blast A Sequence Against Multiple Databases
blast
updated 4 days ago by
berkayekren
• 0 • written 11.5 years ago by
Manju
▴ 50
0
votes
0
replies
98
views
Seeking explanation of the difference between GO term normal vs non-redundant!
GO
RNA-seq
term
analysis
webgestalt
5 days ago by
Soumajit
▴ 30
4
votes
4
replies
250
views
Please give me a grep command to get Gene IDS and TPM values from a stringtie output gtf file
grep
Stringtie
awk
RNA-seq
gtf
4 days ago by
sreelekha
▴ 10
0
votes
2
replies
482
views
esearch get taxonomy ID from a large list of accession IDs
esearch
ubuntu
updated 5 days ago by
biomarco
▴ 20 • written 7 months ago by
garfield320
▴ 20
0
votes
2
replies
187
views
Xenocell - Error in classify reads
Xenocell
PDX
scRNAseq
singularity-container
4 days ago by
c2e09af0
• 0
0
votes
0
replies
135
views
How to detect tumor-specific splicing aberrations
splicing
5 days ago by
iraun
5.8k
0
votes
0
replies
227
views
Job:
PhD candidate in Computational Biology, Munich, Germany
metagenomics
microbiome
computational-biology
PhD
updated 2 days ago by
colindaven
4.5k • written 5 days ago by
melanie.schirmer
▴ 10
1
vote
1
reply
190
views
From where i can download the bed file of hg19 which contaning the corrdinates as well as gene name.
bed
updated 2 days ago by
Ram
38k • written 5 days ago by
Anisha
• 0
1
vote
5
replies
728
views
phylogeny
diversity
phylogenetic
5 days ago by
1509636876
• 0
8
votes
6
replies
403
views
How do you download from CyVerse using FTP or wget?
wget
download
ftp
database
cyverse
updated 3 days ago by
KimchiBaconRoll
• 0 • written 5 days ago by
O.rka
▴ 650
4
votes
4
replies
259
views
How to combine different "groups" in DESeq2 constrast
rnaseq
DESeq2
updated 5 days ago by
swbarnes2
13k • written 5 days ago by
biotrekker
▴ 80
0
votes
1
reply
208
views
Categorizing recorded information in an unfamiliar format?
python
updated 5 days ago by
Darked89
4.2k • written 5 days ago by
zainabi8077
▴ 10
1
vote
2
replies
210
views
How is module-trait association calculated in WGCNA?
eigengene
method
WGCNA
5 days ago by
kivanvan
• 0
0
votes
1
reply
198
views
exporting AAstringset as fasta file
bioconductor
DECIPHER
updated 5 days ago by
pgp.martin
▴ 20 • written 5 days ago by
Avner
• 0
0
votes
2
replies
222
views
Databases for cell lines
Genomics
Genetics
updated 3 days ago by
Ram
38k • written 5 days ago by
aranyak111
• 0
3
votes
1
reply
173
views
BigWig format (Cut&Run)
BigWig
updated 5 days ago by
GenoMax
126k • written 5 days ago by
Usama
• 0
0
votes
0
replies
127
views
Exomedepth Correlation <97 in X chromosome
exomedepth
5 days ago by
Gerardo
• 0
1
vote
3
replies
207
views
blastdbcmd error with -target_only option
blastdbcmd
5 days ago by
biomarco
▴ 20
11
votes
8
replies
453
views
Sorting a STAR-output bam file with samtools leads to a significant reduction in size of the sorted bam file
samtools
STAR
1 day ago by
e.r.zakiev
▴ 30
0
votes
1
reply
196
views
Chiseq files for deseq2
countMatrix
deseq2
Chipseq
updated 5 days ago by
Darked89
4.2k • written 5 days ago by
Chava-Lea
• 0
1
vote
2
replies
216
views
RNA-seq data analysis (prokaryotes) featurecounts with
featureCounts
RNA-Seq
5 days ago by
Pegasus
▴ 80
1
vote
1
reply
225
views
News:
Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude
hackathon
5 days ago by
jared.andrews07
★ 14k
0
votes
0
replies
167
views
Job:
Delta4 Job Offer: Software Engineer
job
software
delta4
biotech
5 days ago by
D4office
• 0
1
vote
3
replies
246
views
ENA Submitted Files Download
ENA
updated 5 days ago by
Darked89
4.2k • written 5 days ago by
theadrijasaha
• 0
0
votes
1
reply
349
views
Using Arriba for gene fusion? chimOutTyp SeparateSAMMold of star not working
Fusion
RNASeq
updated 5 days ago by
nicolas.ares
• 0 • written 13 months ago by
Claire
• 0
0
votes
0
replies
115
views
Problem with homer in findMotifs.pl when using input and bg fasta
motif
Homer
findMotifs.pl
updated 5 days ago by
GenoMax
126k • written 5 days ago by
Ilario
• 0
1
vote
3
replies
190
views
Find genes which are related to SNPs
NCBI
SNP
updated 5 days ago by
GenoMax
126k • written 5 days ago by
hosin
• 0
2
votes
1
reply
213
views
Transcript variants conversion from Ensembl ENST to NM
Ensembl
transcript
RefSeq
updated 6 days ago by
Ben_Ensembl
★ 2.2k • written 6 days ago by
Carmen
• 0
0
votes
3
replies
543
views
CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRleFromGR(x, weight = weight, ignore.strand = ignore.strand): Seqlength…
gff3
GenomicRanges
ORFik
GenomicFeatures
updated 5 days ago by
Ram
38k • written 6 weeks ago by
Estefania
▴ 10
0
votes
1
reply
267
views
ORFik: error making Txdb from GTF and fasta files
gff3
gtf
ORFik
updated 6 days ago by
hauken_heyken
▴ 100 • written 7 weeks ago by
Estefania
▴ 10
0
votes
3
replies
334
views
Get Exon Sequence from biomaRt given ENST transcript ID and exon number.
ensembl
R
biomart
2 days ago by
acererak
▴ 10
0
votes
3
replies
305
views
Alt allele - after bcftools norm
bcftools
GATK
VCF
updated 5 days ago by
iraun
5.8k • written 6 days ago by
kamanovae
▴ 80
1
vote
2
replies
262
views
How to get rid of all copies of repeated lines in BLAST result text files
BLASTX
Python
BLAST
5 days ago by
Hau
• 0
7
votes
1
reply
272
views
How to use filterbyExpr with DESeq2?
DESeq2
RNA-seq
edgeR
updated 5 days ago by
Ram
38k • written 6 days ago by
biotrekker
▴ 80
1,000 results • Page
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Recent Votes
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Comment: samtools idxstats not removing ChrM
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3.4k
i'm not sure this is doing what you expect? you should try filtering your bam directly and then running idx stats samtools view -h yo…
Comment: samtools idxstats not removing ChrM
by
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21k
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Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
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Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
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Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
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4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
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I tried unzipped file, it shows the same error
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This cannot be answered. Add your command line and operating system.
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7.9k
shuffle the sequences, with a rand seed 1. seqkit shuffle --two-pass --rand-seed 1 hairpin.fa -o hairpin.s1.fa testing data …
Comment: split fasta file to train deep learning model
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I'm trying to split my file in two, using Seqkit, but it is not working.. using the command sample, I can generate a file that contains 80%…
Comment: split fasta file to train deep learning model
by
pinheirofabiano
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thank you very much for your comment, @Mensur My file is just a list of peptides, not a complete genome
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