updated 6 months ago by
Ram
43k
•
written 14.2 years ago by
Giovanni M Dall'Olio
28k
60
votes
25
replies
22k
views
17 follow
51
votes
25
replies
6.9k
views
10 follow
68
votes
25
replies
16k
views
12 follow
updated 6 months ago by
GenoMax
141k
•
written 5.2 years ago by
Phil Ewels
★
1.4k
36
votes
25
replies
32k
views
15 follow
17
votes
25
replies
2.4k
views
18
votes
25
replies
15k
views
13 follow
updated 9 months ago by
Pierre Lindenbaum
161k
•
written 2.3 years ago by
ConvolutedGenome
▴
30
13
votes
25
replies
11k
views
9 follow
updated 10 months ago by
Ram
43k
•
written 10.7 years ago by
mikhail.shugay
3.5k
6
votes
25
replies
38k
views
14 follow
updated 10 months ago by
13554221497
•
0
•
written 6.1 years ago by
ARich
▴
130
13
votes
25
replies
4.3k
views
7 follow
59
votes
25
replies
5.4k
views
8 follow
updated 10 months ago by
Ram
43k
•
written 3.7 years ago by
telroyjatter
▴
220
64
votes
24
replies
3.0k
views
12 follow
updated 11 months ago by
Ram
43k
•
written 5.6 years ago by
Molecular_genetics
▴
80
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 5 days ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
159
votes
24
replies
62k
views
19 follow
updated 10 months ago by
Ram
43k
•
written 11.1 years ago by
Nicolas Rosewick
10k
20
votes
24
replies
6.9k
views
6 follow
Forum:
Python or R
updated 11 months ago by
Ram
43k
•
written 5.9 years ago by
Qingyang Xiao
▴
160
15
votes
24
replies
2.6k
views
7 follow
updated 11 months ago by
Ram
43k
•
written 6.0 years ago by
Bohdan Khomtchouk
▴
350
65
votes
24
replies
17k
views
14 follow
updated 6 months ago by
Ram
43k
•
written 14.1 years ago by
Pierre Lindenbaum
161k
27
votes
24
replies
2.4k
views
7 follow
updated 11 months ago by
Ram
43k
•
written 5.6 years ago by
Chris Miller
22k
80
votes
24
replies
11k
views
18 follow
updated 5 months ago by
Ram
43k
•
written 14.0 years ago by
Giovanni M Dall'Olio
28k
4
votes
24
replies
6.0k
views
48
votes
24
replies
8.2k
views
14 follow
66
votes
23
replies
49k
views
8 follow
updated 5 weeks ago by
Getnet Tesfaw
•
0
•
written 6.4 years ago by
1769mkc
★
1.2k
33
votes
23
replies
21k
views
12 follow
updated 7 months ago by
alejandrogzi
▴
120
•
written 6.1 years ago by
JJ
▴
670
18
votes
23
replies
7.7k
views
7 follow
56
votes
23
replies
5.0k
views
10 follow
11
votes
23
replies
1.7k
views
40
votes
23
replies
4.1k
views
12 follow
33
votes
23
replies
4.1k
views
8 follow
updated 10 months ago by
Jeremy Leipzig
22k
•
written 10 months ago by
LauferVA
4.2k
66
votes
23
replies
10k
views
9 follow
updated 6 months ago by
Ram
43k
•
written 14.2 years ago by
Pierre Lindenbaum
161k
31
votes
23
replies
30k
views
15 follow
39
votes
23
replies
34k
views
11 follow
updated 7 months ago by
s.w.vanderlaan
▴
40
•
written 2.8 years ago by
Michal Nevo
▴
130
23
votes
23
replies
9.8k
views
6 follow
updated 5 days ago by
Ram
43k
•
written 5.3 years ago by
iraia.munoa
▴
130
93
votes
23
replies
91k
views
15 follow
updated 3 months ago by
clara.apicella
•
0
•
written 5.8 years ago by
otwtgin2010
▴
610
61
votes
23
replies
56k
views
15 follow
20
votes
23
replies
7.1k
views
6 follow
updated 10 months ago by
Ram
43k
•
written 8.1 years ago by
Mads Lerdrup
▴
460
12
votes
23
replies
8.3k
views
6 follow
updated 10 months ago by
Ram
43k
•
written 5.5 years ago by
grant.hovhannisyan
★
2.6k
6
votes
23
replies
1.4k
views
3 months ago by
young_bioinformatician
▴
230
6
votes
23
replies
26k
views
6 follow
11
votes
22
replies
4.2k
views
3
votes
22
replies
3.9k
views
1
vote
22
replies
2.0k
views
27
votes
22
replies
5.7k
views
8 follow
31
votes
22
replies
13k
views
6 follow
updated 10 months ago by
Ram
43k
•
written 7.6 years ago by
shenwei356
8.4k
28
votes
22
replies
57k
views
11 follow
26
votes
22
replies
13k
views
10 follow
15
votes
22
replies
8.6k
views
updated 5 months ago by
Ram
43k
•
written 14.1 years ago by
Jarretinha
3.4k
24
votes
22
replies
27k
views
11 follow
11
votes
22
replies
4.6k
views
7 follow
updated 10 months ago by
Ram
43k
•
written 11.8 years ago by
Biomonika (Noolean)
3.2k
12
votes
22
replies
2.5k
views
13
votes
22
replies
11k
views
updated 6 days ago by
Ram
43k
•
written 6.8 years ago by
lessismore
★
1.3k
12
votes
22
replies
1.8k
views
Recent Votes
Recent Locations •
All
Morocco, 2 minutes ago
Kansas City, 2 minutes ago
United States, 2 minutes ago
United States, 3 minutes ago
United States, 3 minutes ago
United States, 5 minutes ago
Portugal, 5 minutes ago
Recent Awards •
All
Popular Question to
Kash
▴
110
Popular Question to
pfee418
▴
10
Popular Question to
sarahmanderni
▴
100
Popular Question to
Michael
54k
Popular Question to
michael.flower.14
▴
180
Recent Replies
Comment: Subset Seurat object from Xenium spatial data
by
bk11
★
2.3k
For subsetting a sample, you can do something like this-
Idents(seuratObj) <- "orig.ident"
subj1 <- c("subject_1")
subj1_seur…
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
Ok! I have a recommendation. I'll submit it as an answer, pending your feedback.
vincent
Comment: DYH17 Structure Prediction
by
anasjamshed
▴
120
In modeller we need to use templates as well.so 63% is acceptable
Comment: DYH17 Structure Prediction
by
Ram
43k
Mensur said
> The latter option assumes you know how to use Modeller
Do you know how to use Modeller? I vaguely recall there being a mini…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
OP is working with long reads so the chances of reads aligning to unlocalized scaffolds are relatively small. Doing some testing may be suf…
Comment: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
by
ATpoint
81k
I personally think that comparing the same peak between conditions is meaningful and comparing peaks within the same sample is not.
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
ATpoint
81k
These regions are present in the genome and removing them might incorrectly redirect alignments to known genes. I don't see why you would r…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
njornet
▴
20
Ok thank you! Do you know if there is an easy way of doing so with ncbi-genome-download or I need to use another tool?
Comment: Using vg gamsort with naive sorting algorithm
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
The scope is all publications related to grants from an NIH award program. There are currently ~120k publications in total (about a few hun…
Answer: Using vg gamsort with naive sorting algorithm
by
anovak
▴
120
The `-d` sorting mode does the entire sort in memory, so it will only work if you have enough memory to load your whole GAM file.
To fin…
Comment: Redirection of Duplicate PMIDs
by
dominickd
•
0
I have a list of PMIDs for publications linked to a list of grants, exported from NIH RePORTER.
Comment: Plot DNA methylation level of DMR on the basis of certain genes
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: Should I remove unlocalized scaffols in reference genome before alignment?
by
GenoMax
141k
Yes you can remove those if you are only interested in annotated genes.
Comment: Help for coding: Trinity for differential gene expression studies
by
mchour
•
0
[This could help][1]
[1]: https://github.com/trinityrnaseq/RNASeq_Trinity_Tuxedo_Workshop/wiki/Trinity-De-novo-Transcriptome-Assembly-W…
Traffic: 3360 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6