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4
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380
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Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 16 hours ago by 39k • written 2 days ago by ★ 2.9k
3
votes
5
replies
404
views
RNASeq gene labeling and mRNA filter from bulkRNA data.
RNA-Seq RSubreads
updated 5 hours ago by ▴ 140 • written 4 days ago by • 0
0
votes
2
replies
226
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
12 hours ago by demoraesdiogo2017 ▴ 90
3
votes
3
replies
349
views
Make a BedGraph file
BedGraph RepeatMasker BED
23 hours ago by kirillkirilenko ▴ 20
4
votes
5
replies
453
views
Help with running ATAC using Encode pipeline
encode ATAC-seq
updated 5 hours ago by ▴ 140 • written 5 days ago by ▴ 100
4
votes
4
replies
313
views
Optimum setting for local blastp for ~10K sequences
blast blastp hpc
19 hours ago by sodiumnitrate ▴ 20
0
votes
6
replies
366
views
Impute haplotypes (ImputePipelinePlugin) execution error - PHG
phg
21 hours ago by jrodrigu • 0
0
votes
2
replies
154
views
Data is not displaying in DATABASE......error is not showing in IDE
SERVER DATABASE PHP
17 hours ago by Souvik • 0
5
votes
5
replies
212
views
Alignment of case vs. control from different origin
Alignment RNAseq
20 hours ago by sativus • 0
3
votes
5
replies
657
views
VEP tab/vcf - Different output
VEP ensembl
updated 14 hours ago by 39k • written 14 months ago by ▴ 90
6
votes
7
replies
3.6k
views
7 follow
Which method is the best for using in "dba.count" in Diffbind R package
ChIP-Seq diffbind
updated 14 hours ago by • 0 • written 3.7 years ago by ▴ 120
0
votes
1
reply
1.5k
views
Job: Machine/Deep Learning Research Scientist at UNC Charlotte, NC, USA
machine-learning statistics R python RNA-Seq
updated 11 hours ago by 39k • written 3.6 years ago by ▴ 430
0
votes
1
reply
1.8k
views
Job: Postdoctoral Fellow or Research Scientist in ShanghaiTech (Shanghai, China)
postdoc china
updated 14 hours ago by 39k • written 3.7 years ago by • 0
0
votes
0
replies
1.3k
views
Job: Machine/Deep Learning Postdoc Fellow at UNC Charlotte, NC, USA
machine-learning statistics R python RNA-Seq
updated 11 hours ago by 39k • written 3.6 years ago by ▴ 430
6
votes
0
replies
807
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 12 hours ago by 39k • written 3.6 years ago by ★ 1.9k
1
vote
1
reply
1.1k
views
Job: 3.5 year cancer data scientist postdoc @ UEA, Norwich, UK
machine-learning prostate-cancer genomics
updated 13 hours ago by 39k • written 3.6 years ago by ▴ 120
0
votes
0
replies
962
views
Job: PostDoc in Computational Genomics (St.Petersburg, Russia)
R machine-learning genomics
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 70
0
votes
0
replies
767
views
Job: PostDoc in Computational Biology (St.Petersburg, Russia)
R population-genetics genomics
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 70
2
votes
2
replies
574
views
Entries Per File FASTA Splitter, not quite working
software-error fasta gene python
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Job: UCSC Genome Browser job opportunity!
browser
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 30
1
vote
2
replies
1.3k
views
Job: Postdocs @ New York City: Long Reads based Epigenomics, Metagenomics and Transcriptomics
microbiome genome RNA-Seq sequencing
updated 13 hours ago by 39k • written 3.6 years ago by ▴ 120
0
votes
2
replies
519
views
News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 12 hours ago by 39k • written 3.6 years ago by 23k
1
vote
3
replies
1.4k
views
Is there any tool available for sequence alignment concatenation and supermatrix file generation other than Fastconcat-G?
Assembly alignment software-error
updated 11 hours ago by 39k • written 3.6 years ago by ▴ 100
0
votes
0
replies
909
views
News: scRNA-seq data analysis course in Berlin
scRNAseq R RNA-Seq RNA
updated 11 hours ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
0
replies
569
views
News: 5th edition of the POPULATION GENOMICS course in Berlin
R genome next-gen
updated 11 hours ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
0
replies
898
views
Job: multiple positions open at Nevada Institute of Personalized Medicine.
postdoc assistant-professor
updated 11 hours ago by 39k • written 3.6 years ago by ▴ 10
1
vote
0
replies
571
views
News: The precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling and Biomarker Discovery Challenge is now live!
brain-tumor machine-learning biomarkers
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 150
0
votes
0
replies
1.5k
views
Job: Bioinformatics Analyst - Stoke Therapeutics, Inc, Bedford MA, USA
aws web-application ngs
updated 12 hours ago by 39k • written 3.6 years ago by ★ 2.1k
0
votes
0
replies
1.2k
views
Job: Developing Next Generation Programmable Antibiotics
antibiotics RNA-Seq pathogen genomics
updated 12 hours ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
668
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
sequence RNA-Seq training
updated 11 hours ago by 39k • written 3.6 years ago by ▴ 130
0
votes
0
replies
680
views
News: Training in Bioinformatics for Beginners @NIH
sequence-analysis omics training
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 130
1
vote
0
replies
1.1k
views
Job: Bioinformatics Post-doctoral position at Gulbenkian Institute Portugal
assembly R SNP genome rna-seq
updated 11 hours ago by 39k • written 3.6 years ago by 2.8k
2
votes
0
replies
869
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
proteomics
updated 12 hours ago by 39k • written 3.6 years ago by ★ 6.1k
0
votes
0
replies
1.2k
views
Job: Postdoctoral Position / Computational Scientist position - UT Southwestern, Dallas, TX, USA
computational genome
updated 12 hours ago by 39k • written 3.6 years ago by • 0
3
votes
0
replies
657
views
News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 12 hours ago by 39k • written 3.6 years ago by 9.9k
0
votes
0
replies
1.1k
views
Job: Postdoc in Computational Biology at Novo Nordisk Foundation Center for Biosustainability (DTU Biosustain)
Computational-Biology Postdoc DTU
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 70
0
votes
0
replies
1.0k
views
Job: Senior Bioinformaticians x 4- Tree of Life
flexible-working Python sequencing-data
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 230
12
votes
0
replies
1.6k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 12 hours ago by 39k • written 3.6 years ago by ★ 1.2k
31
votes
16
replies
1.5k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 11 hours ago by 39k • written 3.6 years ago by ★ 5.1k
1
vote
0
replies
730
views
News: 7th International Conference on Artificial Intelligence and Applications (AIAPP 2020)
robot artificial-intelligence machine-learning
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 10
7
votes
17
replies
7.3k
views
10 follow
Python FASTA scripting
Python FASTA
updated 14 hours ago by 39k • written 3.7 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Job: Computational Biologist / Bioinformatician Required - Cambridge
pipelines ngs next-gen r
updated 13 hours ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
545
views
News: EMBL Course: Computing Skills For Reproducible Research: Software Carpentry
Computation
updated 12 hours ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
681
views
News: EMBL Course: Analysis and Integration of Transcriptome and Proteome Data
Data-analysis Proteomics Transcriptomics
updated 12 hours ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
766
views
News: EMBO Practical Course: Measuring Translational Dynamics by Ribosome Profiling
Ribosome-profiling Gene-expression
updated 12 hours ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
1.0k
views
News: EMBL Course: Quantitative Proteomics: Strategies and Tools to Probe Biology
Data-analysis Proteomics
updated 12 hours ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Computational Genomics postdoc at NCBI, NIH. Bethesda, MD, USA.
deep-learning genomics
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 140
0
votes
0
replies
1.4k
views
Job: American Museum of Natural History Postdoctoral Fellowships in Bioinformatics and Computational Biology
human-health biomedicine
updated 12 hours ago by 39k • written 3.6 years ago by ▴ 20
0
votes
0
replies
975
views
Job: Ensembl Bioinformatics Developer
model-organisms ensembl genomics
updated 12 hours ago by 39k • written 3.6 years ago by 23k
0
votes
1
reply
1.7k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 12 hours ago by 39k • written 3.6 years ago by ★ 2.3k
170 results • Page 2 of 4
Recent Votes
Comment: NCBI API, Perl
Comment: NCBI API, Perl
Comment: NCBI API, Perl
Answer: How to detect specific genes in metagenomics data
Comment: Embryo transcriptome
Contigs to chromosomes annotation
A: Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
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Popular Question to v.berriosfarias ▴ 90
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Recent Replies
Answer: What kind of statistical test does Cellranger count use? by fracarb8 ▴ 950
You should read the [cellranger documentation][1] to understand how the analysis are performed. For example, it uses `graphclust` for clust…
Answer: Gene prediction software by alexandru.bologa.marian ▴ 40
Hi, I don't know if there are tools designed to predict pseudogenes, but If i understand correctly from your post you could predict all th…
Answer: Getting Pairwise Sequence Alignment Score With Biopython by Jonathan Lefebre ▴ 50
Maybe quite late, but in case other people are looking for this. Pairwise sequence identity can be easily calculated using basic python fun…
Comment: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
Yes, that is what methylkit is for. See my answer.
Comment: Italicise annotations with pheatmap by ATpoint 72k
Inkscape you learn in a day, for basic image and figure manipulation it's really simple and a good skill to have. Highly recommended.
Comment: Installation of PPFinder by subashini.fbtpb106 • 0
Can you suggest me any software that does gene prediction by masking pseudogenes?
Comment: variant allelic fraction by Pierre Lindenbaum 154k
IMHO this is like asking for the cow when you only have a steak :-)
Comment: Getting same value for start and end position, "DNA methylation" by Pankaj • 0
yes I am working on Bisulphate sequenced data.
Answer: Get relationships and hierarchies for GO terms by rfran010 ▴ 140
Maybe stringdb? seems to have an option to do what you describe. https://string-db.org/cgi/input?sessionId=bmYwdg48WePq&input_page_activ…
Comment: How to calculate TPM from featureCounts output by rfran010 ▴ 140
This file is your counts file, isn't it?
Comment: Help with running ATAC using Encode pipeline by rfran010 ▴ 140
Curious, can you give specific examples of what you refer to as "input file" and "json file"? In the screenshot you shared, input files re…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by rfran010 ▴ 140
What version are you running? I use v2.0.3 on the command line. It looks like this option may be added in a later version, with `GTF.attrT…
Answer: Get relationships and hierarchies for GO terms by Vincent Laufer ★ 2.9k
Hey Daniel, **First, one potential caveat.** Above, you say "I have obtained several GO terms (indicating function and biological proc…
Comment: Perl. How to retrieve data until a keyword in GenBank? by Fungi-Beware! ▴ 10
THANK YOU!! Your method works!! And by removing: $data = ''; I figured out how to retrieve the annotation info with a prompt: …
Comment: variant allelic fraction by malm • 0
Ok but i have only vep files i don't have vcf files
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