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369 results • Page
2 of 8
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
76
views
Help with finding conferences in immuno-informatics/virology
virology
conferences
immunology
1 day ago by
manaswwm
▴ 490
3
votes
3
replies
705
views
KissDE and batch effect
kissDE
kissplice
1 day ago by
david.b.rombaut
▴ 10
0
votes
0
replies
66
views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
NOIseq
6 hours ago by
alifafiq1
• 0
76
votes
71
replies
19k
views
19 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
david
updated 1 day ago by
GenoMax
141k • written 6.2 years ago by
Kevin Blighe
87k
0
votes
0
replies
75
views
How to get somatic variation based on RNA-seq data?
RNA-seq
variation
somatic
1 day ago by
feather-W
• 0
2
votes
3
replies
175
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
updated 7 hours ago by
Pierre Lindenbaum
161k • written 1 day ago by
samuelkalandarov2002
▴ 10
0
votes
0
replies
70
views
Annotating single cell data automatically
cell
annotation
single
1 day ago by
Gerard
• 0
0
votes
0
replies
74
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
100
views
Job:
Ensembl Plants Senior Bioinformatician
ebi
embl
genomics
ensembl
1 day ago by
Ben_Ensembl
★ 2.4k
1
vote
3
replies
184
views
What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
ChIP-seq
updated 2 hours ago by
ATpoint
81k • written 1 day ago by
HyperEvo
• 0
0
votes
1
reply
130
views
RNA-seq bacteria contamination
RNA-seq
updated 1 day ago by
GenoMax
141k • written 1 day ago by
sh
• 0
0
votes
2
replies
166
views
Result of running of p3_in.pl
primer3
updated 1 day ago by
GenoMax
141k • written 1 day ago by
nasri
• 0
0
votes
1
reply
115
views
FAM FILE
file
Fam
1 day ago by
Eleonora
• 0
0
votes
0
replies
64
views
Imputation advice
imputation
1 day ago by
kl
▴ 10
2
votes
5
replies
220
views
Per base sequence content error in RNAseq analysis
RNA-seq
analysis
updated 1 day ago by
GenoMax
141k • written 1 day ago by
ahmad.sajad4541
• 0
0
votes
0
replies
80
views
Trimming best practices for SNP calling
trimming
SNP
trimmomatic
1 day ago by
Enrique
• 0
3
votes
5
replies
523
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
1 day ago by
n_navy
• 0
0
votes
0
replies
67
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
1 day ago by
sativus
▴ 20
6
votes
3
replies
153
views
Interpretting IGV output
IGV
updated 1 day ago by
Carlo Yague
8.7k • written 1 day ago by
analyst
▴ 20
0
votes
1
reply
160
views
homology modelling using swiss model
homology-modeling
swiss-model
updated 1 day ago by
colindaven
6.4k • written 2 days ago by
Ayush
• 0
0
votes
0
replies
69
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
1 day ago by
Biostars2200
• 0
1
vote
5
replies
250
views
DYH17 Structure Prediction
BLAST
Protein-Structure-Prediction
2 hours ago by
anasjamshed
▴ 120
0
votes
0
replies
104
views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
Ciriquant
updated 1 day ago by
Carlo Yague
8.7k • written 1 day ago by
Atul K.
• 0
3
votes
2
replies
247
views
p-value and Boneferroni adjusted p-value the same in R
Bonferroni
R
Statistics
p-value
Fisher
1 day ago by
kristiewyleung
• 0
1
vote
5
replies
401
views
Marking duplicates using UMIs
Deduplication
UMI
updated 1 day ago by
i.sudbery
19k • written 2 days ago by
Lipika
• 0
0
votes
0
replies
132
views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated 2 days ago by
Ram
43k • written 2 days ago by
sainavyav22
• 0
0
votes
0
replies
133
views
Bacterial genome alignment with mauve
Bacteria
mauve
genome
2 days ago by
rthapa
▴ 90
0
votes
0
replies
124
views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
Simulation
CGenFF
Gromacs
VMD
2 days ago by
Mamatha Y S
• 0
0
votes
0
replies
124
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 2 days ago by
Ram
43k • written 2 days ago by
carlopecoraro2
★ 2.5k
0
votes
4
replies
497
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 2 days ago by
ATpoint
81k • written 3 days ago by
rheab1230
▴ 140
0
votes
2
replies
242
views
bam merging for archaic samples
samtools
bam
updated 2 days ago by
Ram
43k • written 3 days ago by
Matteo Ungaro
▴ 100
7
votes
6
replies
426
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
2 days ago by
analyst
▴ 20
1
vote
1
reply
244
views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray
HumanHT-12v4
Illumina
updated 3 days ago by
Gordon Smyth
★ 7.0k • written 3 days ago by
Bioinformatician
• 0
1
vote
0
replies
524
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
3 days ago by
mathavanbioinfo
▴ 90
1
vote
1
reply
286
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
updated 3 days ago by
Ram
43k • written 3 days ago by
Nina
• 0
2
votes
5
replies
492
views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis
MEGA
updated 2 days ago by
Mensur Dlakic
★ 27k • written 3 days ago by
Giorgio
• 0
2
votes
1
reply
275
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 3 days ago by
GenoMax
141k • written 3 days ago by
rebecca.calvo
• 0
0
votes
0
replies
202
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
3 days ago by
abhishekghadge
• 0
2
votes
5
replies
660
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 2 days ago by
Jesse
▴ 740 • written 3 days ago by
Ann
★ 2.4k
0
votes
0
replies
180
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 3 days ago by
Ram
43k • written 4 days ago by
mja
• 0
0
votes
0
replies
183
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
4 days ago by
Nitin
• 0
1
vote
5
replies
531
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 3 days ago by
GenoMax
141k • written 4 days ago by
Luka
• 0
0
votes
0
replies
183
views
absolute path for symbolic links in Snakefile
Snakemake
updated 4 days ago by
Ram
43k • written 4 days ago by
yifangt86
▴ 60
0
votes
0
replies
176
views
Chemical structure validation
structure
cap
validation
metabolite
4 days ago by
Rodolfo Adrián
• 0
3
votes
8
replies
1.2k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 3 days ago by
swbarnes2
14k • written 9 months ago by
bp22
▴ 80
0
votes
1
reply
252
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 4 days ago by
GenoMax
141k • written 4 days ago by
bioyas
▴ 10
0
votes
0
replies
198
views
Copy number variation plot
Copy-number-variation
genomics
updated 4 days ago by
Ram
43k • written 4 days ago by
Emmi
• 0
1
vote
5
replies
679
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 4 days ago by
BioinfGuru
★ 1.7k • written 5 days ago by
rrehimi
• 0
0
votes
0
replies
170
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
4 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
272
views
Could you please assist in identifying this cluster?
single-cell
updated 4 days ago by
Ram
43k • written 4 days ago by
Kazo
• 0
369 results • Page
2 of 8
Recent Votes
Comment: How to convert plink files to Hapmap Format
Am I crazy, or are most published RNA-seq studies vastly underpowered?
Trimming sequences based on NCBI contamination screen report
warning[vg::giraffe]: Cannot cluster reads with a fragment distance smaller than read distance
Answer: Redirection of Duplicate PMIDs
Answer: How to convert plink files to Hapmap Format
Answer: How to convert plink files to Hapmap Format
Recent Locations •
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United States,
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France/Nantes/Institut du Thorax - INSERM UMR1087,
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Recent Awards •
All
Great Question
to
Ann
★ 2.4k
Scholar
to
marco.barr
▴ 80
Popular Question
to
Kash
▴ 110
Scholar
to
GenoMax
141k
Scholar
to
anovak
▴ 120
Popular Question
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pfee418
▴ 10
Popular Question
to
sarahmanderni
▴ 100
Recent Replies
Answer: Difference between samtools "-f 9" and "-f 11"
by
Pierre Lindenbaum
161k
9: read must be paired AND mate must be unmapped 11: read must be paired AND mapped in proper pair AND mate must be unmapped (which is w…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
the data is binary and associated with a disease but we're studying only the cases and there are other phenotypes of severity
Comment: Cell barcode whitelists for DNBelab C Series High-throughput Single-cell RNA Ser
by
atowns21
• 0
@benjamin.pyenson could you share an example command of using STARSolo for the alignment? Did you use the json file directly? Or do you hav…
Comment: How to trim transcripts using information from NCBI contamination screen report
by
GenoMax
141k
> I didn't do a good job with Trimmomatic for some reason so I have to do some trimming of my transcripts. If you had extraneous sequence…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.3k
Please answer my above question. What type of data is it, binary (cases and controls) or quantitative? You need to update Phenotype info in…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
This is how my .fam file looks like ![enter image description here][1] [1]: /media/images/caccd97c-3606-48d2-aa32-423a9882 And I run …
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.3k
What type of phenotype is in your data? It looks like it does not have affection status (default values for affection status will be: 1 = u…
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
Agree. This is also a great solution that flips the problem on its head, as it were, Dominick. I dont want to be preachy, but this is why i…
Answer: Redirection of Duplicate PMIDs
by
GenoMax
141k
> linked to a list of grants Using [**EntrezDirect**][1] this may be much simpler if you have the grant number available. I tested this w…
Answer: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
Hi Dominick, One thing I am not sure of is, how is it that you got the other PMID in the first place? The reason I ask is that you mentio…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
Thanks Marco, btw do you have any idea why I get this "Warning: Skipping --assoc/--model since less than two phenotypes are present." aft…
Comment: Subset Seurat object from Xenium spatial data
by
bk11
★ 2.3k
For subsetting a sample, you can do something like this- Idents(seuratObj) <- "orig.ident" subj1 <- c("subject_1") subj1_seur…
Comment: Redirection of Duplicate PMIDs
by
LauferVA
4.2k
Ok! I have a recommendation. I'll submit it as an answer, pending your feedback. vincent
Comment: DYH17 Structure Prediction
by
anasjamshed
▴ 120
In modeller we need to use templates as well.so 63% is acceptable
Comment: DYH17 Structure Prediction
by
Ram
43k
Mensur said > The latter option assumes you know how to use Modeller Do you know how to use Modeller? I vaguely recall there being a mini…
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