Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this year
all time
today
this week
this month
this year
1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
75
views
Pore-C-Snakemake output files
contacts
1 day ago by
oksana03fel
• 0
1
vote
0
replies
100
views
Linear models with limma: coefficients not estimatable, are the others OK?
limma
1 day ago by
fr
▴ 200
3
votes
3
replies
257
views
Can any one suggest tools that generate "mind-maps" on concepts in biology/biotech?
Mind-maps
updated 1 day ago by
Vincent Laufer
★ 2.9k • written 1 day ago by
John Erik
• 0
3
votes
2
replies
127
views
Panther db Reference List
pantherdb
enrichment-tests
updated 1 day ago by
Ram
39k • written 1 day ago by
e.r.zakiev
▴ 50
0
votes
2
replies
156
views
Ambient RNA expression correction
scRNAseq
SoupX
Seurat
updated 1 day ago by
rpolicastro
12k • written 1 day ago by
Pac314
▴ 10
0
votes
1
reply
106
views
ABO alleles
ABO
variants
SNPs
alleles
updated 1 day ago by
Raony Guimarães
★ 1.2k • written 1 day ago by
Fernando
• 0
1
vote
1
reply
132
views
How to determine the exact version of hg38 if I have only the FASTA file
reference-genome
FASTA
updated 1 day ago by
Ram
39k • written 1 day ago by
mps
• 0
0
votes
2
replies
140
views
readGenericHeader() error message Limma
rna
limma
microarray
genomics
normalization
1 day ago by
survive
• 0
1
vote
1
reply
114
views
mitochondrial genome, SRA PacBio sequencing.
Mitochondrial
PacBio
SRA
Mitogenome
updated 1 day ago by
GenoMax
129k • written 1 day ago by
hashim.rana11
▴ 20
2
votes
1
reply
151
views
sctransform on scRNA seq
seurat
updated 1 day ago by
ATpoint
72k • written 1 day ago by
friguiahlem8
▴ 10
1
vote
4
replies
161
views
Dot Plot using KEGG
KEGG
DotPlot
GO
15 hours ago by
smanzano250800
• 0
13
votes
25
replies
3.0k
views
7 follow
VEP output has no gene names
alignment
sequencing
vep
updated 1 day ago by
barslmn
★ 1.6k • written 4.8 years ago by
Gene_MMP8
▴ 230
0
votes
23
replies
346
views
gatk Hardfilter Error
hardfilter
updated 1 day ago by
Michael
52k • written 2 days ago by
bestone
▴ 10
3
votes
3
replies
160
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA
updated 1 day ago by
andres.firrincieli
3.3k • written 1 day ago by
Sebastian Hesse
▴ 320
1
vote
7
replies
226
views
Docker Error while running nf-core/rnaseq pipeline
RNA-seq
nf-core
docker
updated 1 day ago by
ATpoint
72k • written 1 day ago by
eesha28112001
• 0
2
votes
3
replies
147
views
What type of normalization did they use in this article?
normalization
TPM
r
updated 1 day ago by
Ram
39k • written 1 day ago by
JACKY
▴ 100
2
votes
4
replies
167
views
MACS2 peak calling
MACS2
peak-calling
updated 1 day ago by
seidel
11k • written 1 day ago by
Maurice
• 0
1
vote
1
reply
143
views
Which type of variant caller should I use in a WES normal cell line sample?
variant-caller
WES
updated 1 day ago by
ATpoint
72k • written 1 day ago by
bompipi95
▴ 120
5
votes
4
replies
166
views
Alignment of case vs. control from different origin
Alignment
RNAseq
updated 1 day ago by
i.sudbery
17k • written 1 day ago by
sativus
• 0
0
votes
2
replies
228
views
Peaks annotation on bacterial genome
ChIPpeakAnno
annotation
bacteria
1 day ago by
Maurice
• 0
1
vote
1
reply
99
views
Create customized gene annotation file
reference-genome
cellranger
updated 1 day ago by
Ram
39k • written 1 day ago by
rhonddaskl
• 0
0
votes
0
replies
70
views
metagenomics data - AMR genes
amr
resistome
resistance
ARG
metagenomics
1 day ago by
aziznasr1920
▴ 10
1
vote
3
replies
154
views
How to get a comperative result of 2 bed files?
bam
cnv
bed
updated 18 hours ago by
Pierre Lindenbaum
154k • written 1 day ago by
herh
• 0
0
votes
0
replies
64
views
1000G reference panel for LD clumping
LD
1 day ago by
en_keser
• 0
6
votes
25
replies
29k
views
14 follow
CluserProfiler message "No gene can be mapped"
R
updated 1 day ago by
13554221497
• 0 • written 5.2 years ago by
ARich
▴ 130
160
votes
63
replies
76k
views
38 follow
Selecting Random Pairs From Fastq?
random
fastq
illumina
sequence
updated 1 day ago by
Ram
39k • written 12.2 years ago by
Ketil
4.1k
4
votes
5
replies
13k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end
fastq
rna-seq
illumina
updated 1 day ago by
Ram
39k • written 10.2 years ago by
dfernan
▴ 730
2
votes
2
replies
160
views
Forum:
Colleges
Colleges
india
universities
updated 1 day ago by
Ram
39k • written 1 day ago by
mahimanepalli36
• 0
3
votes
5
replies
226
views
Concatenating text files based on common indices
Bash
Python
updated 1 day ago by
Ram
39k • written 1 day ago by
Hau Tak Leighton
• 0
1
vote
8
replies
372
views
how to create correlation matrix R
pearson-correlation
R
17 hours ago by
satva72
• 0
0
votes
0
replies
78
views
Nucleotide alignments from mmseqs "tblastn"
mmseqs2
tblastn
mmseqs
2 days ago by
saladi
▴ 30
8
votes
5
replies
325
views
I don't want to believe the Interproscan DB estimated download time.
Interproscan
1 day ago by
gh
• 0
1
vote
7
replies
268
views
RNAseq Data and Pipeline
RNA-Seq
DESeq2
Differential-Gene-Expression
updated 2 days ago by
Ram
39k • written 2 days ago by
turcoa1
• 0
0
votes
2
replies
598
views
ERROR running Cuffmerge in reference based RNA-SEQ analysis?
cuffmerge
RNA-Seq
Cufflinks
updated 2 days ago by
Ram
39k • written 12 months ago by
Meeran
• 0
0
votes
7
replies
534
views
How to deal with duplicated gene IDs in TCGA RNA expression data?
TCGA
Expression
mRNA
updated 1 day ago by
Vincent Laufer
★ 2.9k • written 5 days ago by
Camilo Andres
▴ 30
0
votes
3
replies
177
views
How to make a dotplot for bulk RNA average expression ?
Dotplot
RNA-seq
updated 2 days ago by
bhumm
▴ 40 • written 2 days ago by
LionisOne
• 0
0
votes
3
replies
177
views
Dada2 in Qiime2: losing reads during merging
Qiime2
Chimer
Dada2
updated 1 day ago by
andres.firrincieli
3.3k • written 2 days ago by
kamanovae
▴ 80
0
votes
1
reply
142
views
NCBI Common Taxonomy Tree
phylogenetic-tree
comparative-taxonomy
ncbi
updated 2 days ago by
GenoMax
129k • written 2 days ago by
fafad046
• 0
3
votes
6
replies
262
views
Salmon Index
transcriptomics
Bulk
RNA-sequencing
updated 2 days ago by
GenoMax
129k • written 2 days ago by
ashleymb1116
• 0
1
vote
4
replies
550
views
Expected number of haplotype IDs per path in PHG
PHG
updated 2 days ago by
Ram
39k • written 6 weeks ago by
twrl8
• 0
0
votes
3
replies
169
views
minimap's SAM file MAPQ value for the unique alignments
minimap
MAPQ
RNAseq
15 hours ago by
Mohd
▴ 10
1
vote
2
replies
151
views
sorting BAM file
BAM
updated 1 day ago by
ATpoint
72k • written 2 days ago by
Mohammad Amin
• 0
0
votes
1
reply
95
views
Search SRA metadata for Histological_Type and Body_Site
sra
updated 2 days ago by
GenoMax
129k • written 2 days ago by
oakhamwolf
▴ 20
2
votes
3
replies
213
views
NCBI refseq ids to uniprot ids
refseq
Uniprot
updated 2 days ago by
Ram
39k • written 2 days ago by
t.ali
• 0
3
votes
3
replies
151
views
Covert multiple short sequence into list of IUPAC motif
sequence
updated 2 days ago by
GenoMax
129k • written 2 days ago by
praasu
▴ 40
1
vote
0
replies
86
views
Resequencing data of pangenome
NGS
PanGenome
Resequence
updated 2 days ago by
Ram
39k • written 2 days ago by
bioinfo223
▴ 10
4
votes
2
replies
188
views
Graphing Average Expression of Group of Genes
Boxplot
R
updated 2 days ago by
Shred
★ 1.2k • written 2 days ago by
cthangav
▴ 40
0
votes
0
replies
80
views
Converting rds file to h5ad and saving raw counts as X
R
seurat
updated 2 days ago by
zx8754
11k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
1
reply
139
views
Seurat: How to get all genes name of a cell ?
seurat
updated 2 days ago by
jv
★ 1.2k • written 2 days ago by
Picasa
▴ 640
1
vote
0
replies
217
views
miRDeep2 installation showing "ln: failed to create symbolic link './randfold': File exists" error.
miRDeep2
updated 2 days ago by
Ram
39k • written 2 days ago by
Supernova
• 0
1,000 results • Page
2 of 20
Recent Votes
Answer: Help with running ATAC using Encode pipeline
Comment: sorting BAM file
Comment: Create customized gene annotation file
Answer: MACS2 peak calling
Answer: How to determine the exact version of hg38 if I have only the FASTA file
PacBio Pipeline and Tools for Variant Call
Answer: how to sort a fasta file
Recent Locations •
All
United States,
just now
United States,
7 minutes ago
United States,
8 minutes ago
South Korea,
13 minutes ago
USA,
14 minutes ago
Hong Kong,
14 minutes ago
South Korea,
14 minutes ago
Recent Awards •
All
Popular Question
to
Daniel
▴ 30
Popular Question
to
eb13
▴ 20
Scholar
to
seidel
11k
Teacher
to
rpolicastro
12k
Popular Question
to
tarek.mohamed
▴ 350
Popular Question
to
synat.keam
▴ 70
Popular Question
to
Maria17
▴ 20
Recent Replies
Answer: Make a BedGraph file
by
rfran010
▴ 80
I would suggest bedtools makewindows to generate your 3,000bp bins then bedtools coverage to generate fraction of repeats over your windows…
Answer: What is the best way to clean bulk RNA-seq data?
by
rfran010
▴ 80
Honestly, I am a fan of visualizing to select a threshold since these can depend on the specific experiment. I would even just run standard…
Answer: Help with running ATAC using Encode pipeline
by
rfran010
▴ 80
Read all instructions carefully Specifically, this info is under the "Input JSON file specification" section with details in the followin…
Answer: BioInformatics, Software
by
rfran010
▴ 80
There have been some good suggestions, but it seems like you may be asking one of two questions, either (1) how to do bioinformatics? or (2…
Answer: Genome assembly statistical tools
by
Bryan
• 0
I'll follow up what a few others have mentioned, but I like stats.sh within the BBTools package for raw assembly stats. I'll then polish my…
Comment: how to design a guide RNA
by
rfran010
▴ 80
I agree this is very basic CRISPR mechanism and you'd be better off reading sites that could explain better than me. However, there is a lo…
Comment: ATAC peak-calling: same peak ID across multiple experimental conditions?
by
rfran010
▴ 80
You want to use the MACS2 score columns? You can retain these with bedtools option `-c` . This will retain the score columns from any merge…
Comment: best annotation approach for peaks
by
rfran010
▴ 80
The number of regions annotated as "Promoters" is the same regardless of TSS length? You can add this argument to annotatePeak (for mouse M…
Answer: Optimum setting for local blastp for ~10K sequences
by
GenoMax
129k
It is possible that NCBI keeps the entire `nr` indexes in memory and searches against that so there is no I/O involved. NCBI now also uses …
Comment: Counting intronic reads in bulk RNA-seq
by
swbarnes2
13k
10x does give you a big flashing warning telling you what the new default is, and tells you how to redo it without that if it's not what yo…
Comment: Identification of genes involved in my pathway
by
smanzano250800
• 0
Thank you, but it doesn´t work. I´ll try GeneSCF again.
Comment: How GATK pipeline called a homozygeous alternate allele (1/1) although one copy
by
mohsamir2016
▴ 30
Organism: gallus gallus Genome version used: GRCg6a Chr and Position: NC_006113.5, 24618 Ref allele: A Alt allele: G Genotype: 1/1 (G/G) …
Comment: Counting intronic reads in bulk RNA-seq
by
dsull
★ 4.2k
Yeah, that's their assumption and also they assume that we're NOT *ONLY* interested in quantifying mature transcripts. However, for most an…
Comment: how to look for interactions between different chromosomes
by
rheab1230
▴ 140
apart from tool, is there any biological mechanism for explanation of interactions between different chromosomes?
Comment: Does adding reads cause batch effects?
by
ATpoint
72k
Yes, you would process sequencing and resequencing separately and then do a PCA. I would expect no relevant batch effect here.
Traffic: 2265 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6