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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
123
views
Which AF column do I use from TCGA data in maftools
vcf2maf
sequencing
genome
WES
maf
2 days ago by
CH1374
▴ 10
0
votes
3
replies
243
views
Faking hh-suite workflow / alignment output
alignment
hhsuite
updated 2 days ago by
Mensur Dlakic
★ 22k • written 2 days ago by
Nick
▴ 40
0
votes
4
replies
317
views
RNASeq differential expression masked by pathways disregulation
normalization
Rnaseq
batch
updated 1 day ago by
i.sudbery
16k • written 2 days ago by
Gama313
▴ 110
0
votes
0
replies
125
views
Chloroplast genome phylogenetic analysis
Inverted
region
Chloroplast
genome
Phylogenetic
analysis
SSC
2 days ago by
a.bibek52
• 0
0
votes
0
replies
121
views
mVISTA annotation
alignment
Annotation
S-LAGAN
mVISTA
2 days ago by
a.bibek52
• 0
0
votes
1
reply
177
views
Create a new seurat object using one cluster identified in a previous seurat object
object
seurat
Create
clusterization
updated 2 days ago by
Ribo
▴ 20 • written 2 days ago by
Fernanda
• 0
4
votes
2
replies
213
views
Analyzing bulk RNA-seq
RNAseq
updated 2 days ago by
swbarnes2
13k • written 2 days ago by
Zaid
• 0
0
votes
5
replies
245
views
Why am I getting only one common value when comparing two excel files?
python
pandas
excel
updated 2 days ago by
seidel
10k • written 2 days ago by
namck
• 0
2
votes
4
replies
301
views
Alien-hunter outputs
alien-hunter
1 day ago by
schlogl
▴ 130
1
vote
13
replies
396
views
RNAseq for DE purpose
RNAseq
updated 2 days ago by
swbarnes2
13k • written 2 days ago by
m.habib
• 0
0
votes
0
replies
108
views
Identifying off-target mutation frequency in Bacterial genomes
dCas9-deaminase
off-target
SNPS
WGS
dCas9
2 days ago by
pd378
• 0
1
vote
3
replies
265
views
Simulating metatranscriptomic shotgun reads
metatranscriptomic
RNA
simulated-reads
shotgun-sequencing
updated 2 days ago by
Mensur Dlakic
★ 22k • written 3 days ago by
sovrappensiero
▴ 50
0
votes
0
replies
99
views
News:
Eukaryotic Metabarcoding course
eDNA
Metabarcoding
updated 2 days ago by
Ram
37k • written 2 days ago by
carlopecoraro2
★ 2.2k
1
vote
2
replies
226
views
want the codes for Deseq2 to perform DEGs.
DEGs
1 day ago by
rupali
• 0
0
votes
0
replies
87
views
SVA correction reduces ability to detect genes as differential expressed?
effects
RNAseq
expression
batch
SVA
gene
2 days ago by
MB
▴ 50
0
votes
7
replies
349
views
CoveragePlot in Signac from MACS2 Object
Signac
scATAC-seq
updated 1 day ago by
seidel
10k • written 2 days ago by
bioinformatics.girl
• 0
0
votes
1
reply
120
views
Looking for RNA-seq aligner that can identify not properly mapped paired
aligner
paire-end
rna-seq
updated 2 days ago by
Matthias Zepper
2.9k • written 2 days ago by
romain.lannes
▴ 90
0
votes
2
replies
137
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
2 days ago by
PeterC_NCBI
▴ 180
0
votes
1
reply
149
views
Remove duplicates in multifasta, where entries are paired
bash
python
updated 1 day ago by
dthorbur
▴ 260 • written 2 days ago by
SaltedPork
▴ 170
1
vote
3
replies
170
views
'SyntaxError': 'return' outside function?
biopython
pattern
python
regex
updated 2 days ago by
GenoMax
125k • written 2 days ago by
namck
• 0
1
vote
1
reply
129
views
snakemake Unexpected keyword bam in rule definition
snakemake
updated 2 days ago by
Ram
37k • written 2 days ago by
Aidand
• 0
0
votes
1
reply
136
views
How to remove from BAM file header all chromosomes, except chrM
samtools
header
updated 2 days ago by
Pierre Lindenbaum
152k • written 2 days ago by
User000
▴ 620
0
votes
0
replies
80
views
Normalize Together Total RNA-SEQ vs Ampliseq protocols reads
RNA-seq
deseq2
ampliseq
ion-torrent
R
2 days ago by
Fernando
• 0
0
votes
0
replies
85
views
Combining mRNA and total RNA studies
RNA-Seq
bulk
updated 2 days ago by
Ram
37k • written 2 days ago by
aksh
• 0
0
votes
0
replies
75
views
Twist Exome Sequencing Data: Palindromic Tandem Insertion-Deletion
NGS
Artefact
Twist
Sequencing
Exome
2 days ago by
TraPS-VarI
• 0
3
votes
5
replies
363
views
DNA methylation (RRBS/WGBS) prediction from DNA sequence (WGS)
methylation
Prediction
DNA
WGS
WGBS
Imputation
1 day ago by
Lalaland
▴ 10
0
votes
0
replies
183
views
Job:
Computer scientist / Bioinformatician
data-science
software-development
structural-bioinformatics
machine-learning
updated 2 days ago by
Ram
37k • written 2 days ago by
David
▴ 10
2
votes
1
reply
187
views
Define and set up Standards curve
quantstudio
qPCR
qpcr
updated 2 days ago by
Matthias Zepper
2.9k • written 2 days ago by
Maria17
▴ 10
0
votes
0
replies
135
views
Bootstrap in PhyML
phyml
bootstrap
2 days ago by
Jimpix
▴ 10
0
votes
0
replies
115
views
Cibersort phenotpe file to create signature matrix
deconvolution
cibersort
file
phenotype
2 days ago by
ce810b57
• 0
0
votes
0
replies
126
views
Enrichment map in python/ Pathway network by using python
interaction.
enrichment
network
pathway
analysis
2 days ago by
sonsunjirachote
• 0
0
votes
1
reply
223
views
TCGAbiolinks HT-Seq count
HT-Seq
count
updated 2 days ago by
pilargmarch
▴ 10 • written 4 days ago by
Elizabeth
• 0
0
votes
1
reply
177
views
How to analysis genomes with orthologs?
ortholog
genome
annotation
updated 2 days ago by
GenoMax
125k • written 3 days ago by
沛煒
• 0
1
vote
4
replies
424
views
translate CDS to prot formatted with nt nubers
tool
translate
updated 2 days ago by
GenoMax
125k • written 7 days ago by
vvasta
• 0
1
vote
2
replies
207
views
VCF to Plink files
vcf
pink
pgen
psam
2 days ago by
hi.there
• 0
0
votes
0
replies
116
views
Does the falcon input CLR reads need corrected by Canu?
Genome
assemble
3 days ago by
leeunfeng
• 0
21
votes
10
replies
6.1k
views
6 follow
Randomize Read Order In Multigbp Fastq File?
fastq
updated 3 days ago by
sovrappensiero
▴ 50 • written 11.6 years ago by
2184687-1231-83-
★ 5.0k
1
vote
2
replies
256
views
Heatmap by group in R
ggplot2
R
heatmap
updated 3 days ago by
bkleiboeker
▴ 170 • written 3 days ago by
poet1988
▴ 10
0
votes
0
replies
103
views
CUT&RUN H3K27me3 normalization with spike-in
deepTools
3 days ago by
mohansri1
• 0
0
votes
0
replies
114
views
How to identify nodes in a network with a higher degree and higher edge variance?
network
variance
WGCNA
igraph
updated 3 days ago by
ATpoint
68k • written 3 days ago by
adR
▴ 100
14
votes
9
replies
411
views
Scientific Notation to Decimal
notation
decimal
scientific
3 days ago by
am29
▴ 30
2
votes
4
replies
460
views
A way to get a list of determined and undetermined indexes using illumina interop library?
interop
python
illumina
updated 3 days ago by
GenoMax
125k • written 8 days ago by
fluffycowbird
▴ 20
2
votes
2
replies
3.2k
views
IGV resizing tracks
IGV
updated 3 days ago by
Ivan
▴ 10 • written 6.8 years ago by
14134125465346445
★ 3.6k
0
votes
2
replies
197
views
Can you apply Base Score Recalibration in parallel?
wgs
updated 3 days ago by
LChart
1.8k • written 3 days ago by
optimistsso4co3
▴ 100
0
votes
3
replies
267
views
Change accession number to chromosome number in reference genome
fasta
chromosome
updated 2 days ago by
Ram
37k • written 3 days ago by
Tsigabu
• 0
1
vote
1
reply
136
views
Aspera: Command 'ascp' not found
aspera
linux
idr
ssh
updated 3 days ago by
ATpoint
68k • written 3 days ago by
Keenan
• 0
0
votes
0
replies
89
views
Median depth across samples from multi-sample VCF
DP
bcftools
3 days ago by
alex.blakes
• 0
0
votes
3
replies
259
views
NMDS: how many axes to plot?
NMDS
updated 2 days ago by
Mensur Dlakic
★ 22k • written 3 days ago by
LaFra
▴ 10
0
votes
5
replies
257
views
Add Information to Protein Fasta Headers
protein
fasta
functional-annotation
header
3 days ago by
ahmadjoyyia
▴ 10
3
votes
2
replies
172
views
WGCNA gene selection: gene significance or LASSO?
LASSO
WGCNA
updated 2 days ago by
rpolicastro
11k • written 3 days ago by
janinubinu
• 0
1,000 results • Page
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Deseq2 with one factor and multiple levels
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1000 genomes project reference panel - GRCh38
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Comment: ceres score in crispr screen
by
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▴ 20
:) technical support. my run is giving Error: Encountered internal Bowtie 2 exception (#1) Command: /Users/sudeeris/Downloads/bowtie2-2.5…
Comment: Network analysis for two Factors
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10k
Have you looked at any tutorials? Three are many out there. ([1][1], [2][2], [3][3], [etc.][4]) Do you have a preferred language? [1]: …
Comment: ceres score in crispr screen
by
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10k
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9.9k
If you aren't willing to provide more precise information than this, sufficient for a reader to reproduce what you're seeing, I will delete…
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First issue is that GEO series matrix files can't be read using `read.delim`. Second issue is the data are from Agilent microarrays and …
Comment: PLINK2 selecting variants based on INFO score
by
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• 0
I have tried that (the .pvar file contains the "1:10586" form as ID which I mentioned above) which leads to the same output as above, 0 var…
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You can run any system command from inside R using `system()`. This works well if there is a single command without many dependencies. For …
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152k
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My honest opinion: Do processing of sequencing data on the standard command line with samtools. There is no need for the added complexity t…
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Another great and up-to-date resource is this: https://www.sc-best-practices.org/preamble.html
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9.9k
The --exclude file must use the same variant IDs as your .pvar file. You should elaborate on what seemed to go wrong when you tried to arr…
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Hello, my problem is the same as yours, did you finally solve this problem?
Comment: phylogeny
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您好,我的问题和您的一模一样,请问您这个问题最终解决了吗
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by
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If that's the case then I'll just proceed then. Thank you!
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