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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
249
views
Finding repeats in dna sequences
OP
4 days ago by
ojaswinipandey
• 0
1
vote
3
replies
286
views
Genetic Carrier Screening Test
ANNOVAR
Mappin
VEP
Maverick
updated 4 days ago by
LChart
2.1k • written 4 days ago by
Edmond
• 0
0
votes
5
replies
328
views
How to get human cDNA sequences together with UTR regions?
transcripts
cDNA
genome
rna-seq
updated 4 days ago by
Istvan Albert
96k • written 4 days ago by
Apex92
▴ 260
0
votes
0
replies
182
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single
integration
cell
DEG
design
analysis
4 days ago by
paria
▴ 70
4
votes
12
replies
658
views
6 follow
gtf2bed not converting to bed
bed
gtf
updated 2 days ago by
Juke34
7.7k • written 5 days ago by
Agamemnon
▴ 60
1
vote
1
reply
185
views
Are there any papers that have both anatomical imaging data and variants?
vcf
imaging
updated 4 days ago by
LChart
2.1k • written 4 days ago by
Jeremy Leipzig
21k
4
votes
2
replies
250
views
Book for RNASeq analysis recommendation
RNAseq_analysis
book
ebook
recommendations
updated 3 days ago by
Istvan Albert
96k • written 4 days ago by
kng
▴ 30
1
vote
0
replies
148
views
I want to calculate if the sample has whole genome duplication event or not?
sequencing
wgs
4 days ago by
Hyper_Odin
▴ 280
0
votes
0
replies
120
views
Metatranscriptomics: de novo assembly of mRNA per OTU?
MAGs
no
total
novo
metatranscriptomics
assembly
de
MEGAN
rna
4 days ago by
Maria
• 0
10
votes
4
replies
568
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 4 days ago by
kng
▴ 30 • written 6 weeks ago by
David Langenberger
9.9k
1
vote
0
replies
130
views
News:
Summer School in Bioinformatics
Genomics
Docker
RNA-seq
updated 4 days ago by
Ram
38k • written 4 days ago by
carlopecoraro2
★ 2.3k
0
votes
8
replies
212
views
Post about extracting information from GFF
GFF
updated 4 days ago by
GenoMax
126k • written 4 days ago by
yoser4
▴ 10
0
votes
3
replies
151
views
A problem about saving Rstudio data matrix
data
Rstudio
matrix
updated 4 days ago by
bkleiboeker
▴ 320 • written 4 days ago by
yoser4
▴ 10
0
votes
0
replies
82
views
How can I obtain the significantly different taxa data from this Aldex plot ? (Using R)
taxa
test
Aldex2
of
abundance
Relative
R
4 days ago by
ohtang7
▴ 30
0
votes
0
replies
105
views
GO analysis in R vs website
GO
4 days ago by
Thomas
• 0
1
vote
0
replies
105
views
Tutorial:
List of Machine Learning-Based Scoring Function Papers
machine_learning
papers
scoring_function
docking
4 days ago by
Milad
▴ 10
0
votes
2
replies
239
views
Obtain number of base pairs in a genome
basepairs
3 days ago by
Nika
• 0
0
votes
0
replies
92
views
Observed vs. expected occurences in genomic windows
ngs
statistics
snp
4 days ago by
schmau
▴ 10
0
votes
0
replies
101
views
How generate sample sheet data for Illumina Infinium Global Screening Array *.idat file?
Global
microarray
Illumina
Infinium
Screening
.idat
Array
5 days ago by
Jichen Wen
▴ 30
2
votes
9
replies
365
views
STARsolo
STARsolo
scRNAseq
updated 4 days ago by
GenoMax
126k • written 5 days ago by
No.Lar037477
▴ 10
0
votes
1
reply
172
views
Combining RNAseq datasets
RNAseq
DEseq
NGS
updated 4 days ago by
rpolicastro
11k • written 5 days ago by
torio
• 0
1
vote
3
replies
224
views
RangedSummarizedExperiment to Sparse Matrix
dgCMatrix
sparse
RangedSummarizedExperiment
matrix
updated 4 days ago by
ATpoint
70k • written 5 days ago by
rbronste
▴ 410
0
votes
1
reply
176
views
Is there a need to remove alternative loci from human reference assembly GRCh38.p14 for bulk RNAseq read alignment?
reference
human
RNAseq
alternative
genome
locus
updated 5 days ago by
ATpoint
70k • written 5 days ago by
akshay
• 0
0
votes
2
replies
204
views
Do we need replicates for PSI calculation in SUPPA2?
SUPPA2
splicing
RNA-seq
Alternative
4 days ago by
sreelekha
▴ 10
0
votes
0
replies
168
views
How to export the result contents (analyzed part only) of clr function to the CSV file ? (The microbiota data) in R Aldex2 package
Aldex2
ASV
R
updated 3 days ago by
Ram
38k • written 5 days ago by
ohtang7
▴ 30
0
votes
0
replies
120
views
check if a protein abundance is expected to be low
mass-spectrometry
5 days ago by
Abhishek
• 0
0
votes
0
replies
108
views
Error when trying to send data to DB chado
install
chado
error
5 days ago by
Marcos
▴ 10
0
votes
0
replies
136
views
Why did I get more unique genes than unique transcripts w/ STAR -> featureCounts?
rnaseq
genomics
star
fastq
alignment
4 days ago by
O.rka
▴ 650
0
votes
0
replies
141
views
inquiry related to same SNP for a gene across for two tissues
snp
relation
tissue
genetics
gene
5 days ago by
rheab1230
▴ 140
6
votes
11
replies
647
views
Calculate RPKM
RPKM
5 hours ago by
Chris
▴ 70
0
votes
5
replies
324
views
install seurat 4.0.3
Seurat
1 day ago by
Andy
▴ 30
0
votes
0
replies
115
views
chia-pet tutorial
snp
gene
chia-pet
5 days ago by
rheab1230
▴ 140
2
votes
4
replies
331
views
Big BCV (Biological Coefficient of Variation) - no sense to continue the analysis of differential gene expression?
BCV
differential
RNA-seq
EdgeR
design
4 days ago by
Ann
▴ 10
0
votes
2
replies
192
views
query UCSC db for CDS coordinates (Gencode)
CDS
mysql
UCSC
bed
updated 5 days ago by
Pierre Lindenbaum
153k • written 5 days ago by
bitpir
▴ 210
1
vote
1
reply
186
views
Controlling for FDR in 450k methylation microarray data
minfi
methylation
450k
limma
epigenetics
updated 5 days ago by
LChart
2.1k • written 5 days ago by
Edward E-B
• 0
2
votes
1
reply
186
views
Choosing the correct shrinkage type
DEseq2
apeglm
lfcShrink
updated 5 days ago by
LChart
2.1k • written 5 days ago by
Chiara
▴ 10
0
votes
5
replies
341
views
How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV
VCF
Genotype
updated 5 days ago by
cmdcolin
★ 2.9k • written 5 days ago by
kk.mahsa
▴ 140
1
vote
1
reply
214
views
How do I convert GUI operations to CUI operations in pymol?
pymol
pdb
updated 5 days ago by
Wayne
★ 1.6k • written 6 days ago by
FT
▴ 10
0
votes
0
replies
131
views
DESeq2 for time series and control-treated groups
log2foldchange
DESeq2
5 days ago by
t.ru
• 0
0
votes
6
replies
264
views
collapsePathways function throwing error
GSEA
fgsea
R
updated 5 days ago by
alserg
▴ 830 • written 5 days ago by
Pac314
▴ 10
2
votes
3
replies
249
views
mRNA Seq
NGS
updated 4 days ago by
Ram
38k • written 5 days ago by
Yaseen
▴ 10
0
votes
1
reply
237
views
How do I compare evolutionary estimates between two sequence groups in codeML?
codeML
updated 5 days ago by
shelkmike
▴ 920 • written 8 days ago by
codoncity
• 0
0
votes
0
replies
114
views
Adding MBC/UMI RX tag to read name
umi
5 days ago by
Christian
▴ 20
1
vote
7
replies
240
views
error bbduk
linux
bbduk
java
updated 5 days ago by
lieven.sterck
14k • written 5 days ago by
Kárita
• 0
42
votes
15
replies
15k
views
13 follow
How To Blast A Sequence Against Multiple Databases
blast
updated 5 days ago by
berkayekren
• 0 • written 11.5 years ago by
Manju
▴ 50
0
votes
0
replies
100
views
Seeking explanation of the difference between GO term normal vs non-redundant!
GO
RNA-seq
term
analysis
webgestalt
5 days ago by
Soumajit
▴ 30
4
votes
4
replies
253
views
Please give me a grep command to get Gene IDS and TPM values from a stringtie output gtf file
grep
Stringtie
awk
RNA-seq
gtf
5 days ago by
sreelekha
▴ 10
0
votes
2
replies
482
views
esearch get taxonomy ID from a large list of accession IDs
esearch
ubuntu
updated 5 days ago by
biomarco
▴ 20 • written 7 months ago by
garfield320
▴ 20
0
votes
2
replies
192
views
Xenocell - Error in classify reads
Xenocell
PDX
scRNAseq
singularity-container
5 days ago by
c2e09af0
• 0
0
votes
0
replies
138
views
How to detect tumor-specific splicing aberrations
splicing
6 days ago by
iraun
5.8k
1,000 results • Page
3 of 20
Recent Votes
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Comment: samtools idxstats not removing ChrM
The Biostar Handbook. A bioinformatics e-book for beginners.
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
Comment: GATK GenotypeGVCFs explain
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Recent Replies
Comment: GATK GenotypeGVCFs explain
by
Pierre Lindenbaum
153k
https://gatk.broadinstitute.org/hc/en-us/articles/360035531852-Intervals-and-interval-lists
Comment: GATK GenotypeGVCFs explain
by
Sarah
▴ 30
thank you
Comment: GATK GenotypeGVCFs explain
by
raphael.B
▴ 270
It limits the operation to some genomic regions given as parameter
Comment: GATK GenotypeGVCFs explain
by
Sarah
▴ 30
what does the option L
Comment: GATK GenotypeGVCFs explain
by
Pierre Lindenbaum
153k
GenotypeGVCFs takes a set of GVCF files called with HaplotyperCaler and output a VCF file.
Answer: TCGA Methylation Data and Gene Mapping
by
Basti
★ 1.4k
CpGs may be annotated to more than >1 gene simply because gene regions overlap on the genome. If you want to associate each gene to a me…
Comment: Circos plot
by
Fabio Marroni
★ 3.0k
Please give a look to [this post][1] for increasing the probability to get an answer. If I may add some needed info: 1. What exactly do y…
Comment: Trying to install Roary with Conda results in error message
by
tobiwan
▴ 10
Wow, thank you so much for your explanation! My conda channel is indeed set to strict priority. Should packages with different dependencie…
Comment: FeatureCounts >edgeR > GO
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You can use BioMart to convert your "gene-IDs" to gene symbols, but you need to specify from which database your gene identifiers come from
Comment: How to create GO Bar Plot using data obtained from DAVID Functional Enrichment A
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Basti
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If you search "DAVID dotplot" on this forum, you have many answers to your question. Note that you can also perform DAVID Functional Enrich…
Answer: How to implement this two-stage one-to-many workflow using WDL?
by
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nottested, something like: ``` version 1.0 workflow BIOSTAR { call FIRST { } scatter (F in FIRST.each_F)…
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AtenaLia
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You can try https://genebe.net , it is similar to Varsome though...
Answer: ACMG assignment tools
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AtenaLia
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Hi, free ACMG implementation without restrictions can be found at https://genebe.net . AFAIK there is also a free API coming.
Comment: Bad quality fastq files for analysis
by
Gene_MMP8
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I don't have the data available. I want to identify such datasets. The overall aim is to determine what factors influence fastq data qualit…
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Mensur Dlakic
★ 23k
I don't know what exactly the error message means. What I can tell you is that a burn-in of 2500 generations is absolutely inadequate. That…
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